Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003025

Physical Location & Seq

Genomic Coordinates Reverse (-)

51285500 .. 51285964

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0365200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGCGAGCTGGGCCATACATGCCTCCCGTGTTCAAACAACTCAAGAATCTCTGTGGTCTTAAAGAACCAGTCCAGCCAATTGTGGTAGCGACGCATAATGACTTGGTCTTGTGCAGCACAAGCAAGTATTTTCAACGCTATTACTACATGTGCAATCCGTATACCGGGAAATGTGTTGTTCTTCCTCCCACCCTAGCTCAATATGAGACGATACCGGTGGGATTCATGATCAATGTTCCGACTGGTAGGTTTGTGGTTGTGAGAATTCCACATCCTGAATATGAACATGATCATCGTCCTCCTTTCAAGCATGAATTATATTTAACGTGGAGATCTTCTCTTCTCAGACCGGTGAGTGGAGAGAGTCGGTTGTGTTATCCCCAAGGGGCTTTAGGGTTGACGATATCGATTGGAATGTTAGTTATGTTCACGATGGCATGGAGGGCTGTATTGGTAGAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

154

Amino Acids

17.65

Weight (kDa)

9.16

Isoelectric Point (pI)

41.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02630
fragaria_vesca	FvH4_1g16210 FvH4_1g16210 FvH4_1g16210 FvH4_2g34110
malus_domestica	MD02G1174000.v1.1 MD08G1097900.v1.1 MD15G1080000.v1.1
prunus_persica	Prupe.1G433000_v2.0.a1 Prupe.1G433000_v2.0.a1 Prupe.1G433000_v2.0.a1 Prupe.7G131700_v2.0.a1 Prupe.7G131700_v2.0.a1 Prupe.7G131700_v2.0.a1
pyrus_communis	pycom02g14030 pycom08g07980 pycom15g07450 pycom15g24820
rosa_chinensis	RchiOBHm_Chr2g0105911 RchiOBHm_Chr6g0308231
rosa_laevigata	RLG00000010656 RLG00000017469
rosa_multiflora	Rmu_sc0004367.1_g000010
rosa_roxburghii	Rroxscaffold_2G00137580 Rroxscaffold_7G00160330
rosa_rugosa	Rorug02G0131900 Rorug06G0365000 Rorug06G0365000 Rorug06G0365100 Rorug06G0365200
rosa_samantha	Rh2AG182400 Rh2CG187000 Rh6AG474100 Rh6BG484800 Rh6CG489900 Rh6DG476200
rosa_wichuraiana	Rw2G014310 Rw6G041360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	161
AcsI	RAATTY	1 cut(s)	264
AfiI	CCNNNNNNNGG	2 cut(s)	164, 356
AflIII	ACRYGT	1 cut(s)	147
AgeI	ACCGGT	2 cut(s)	214, 349
AgsI	TTSAA	3 cut(s)	34, 134, 307
AluBI	AGCT	2 cut(s)	8, 197
AluI	AGCT	2 cut(s)	8, 197
Alw26I	GTCTC	1 cut(s)	200
AoxI	GGCC	1 cut(s)	11
ApeKI	GCWGC	1 cut(s)	114
ApoI	RAATTY	1 cut(s)	264
AsiGI	ACCGGT	2 cut(s)	214, 349
AspS9I	GGNCC	1 cut(s)	11
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	364
BbvI	GCAGC	1 cut(s)	126
BccI	CCATC	1 cut(s)	427
BclI	TGATCA	2 cut(s)	228, 289
BcnI	CCSGG	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	1 cut(s)	194
BglII	AGATCT	1 cut(s)	332
BisI	GCNGC	1 cut(s)	115
BlsI	GCNGC	1 cut(s)	116
Bme1390I	CCNGG	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	11
BmrFI	CCNGG	1 cut(s)	166
BplI	GAGNNNNNCTC	2 cut(s)	322, 354
BpuEI	CTTGAG	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	166
Bsa29I	ATCGAT	1 cut(s)	407
BsaJI	CCNNGG	1 cut(s)	382
BsaWI	WCCGGW	2 cut(s)	214, 349
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 356
Bse118I	RCCGGY	2 cut(s)	214, 349
Bse1I	ACTGG	2 cut(s)	68, 247
BseCI	ATCGAT	1 cut(s)	407
BseDI	CCNNGG	1 cut(s)	382
BseGI	GGATG	1 cut(s)	271
BseLI	CCNNNNNNNGG	2 cut(s)	164, 356
BseMII	CTCAG	1 cut(s)	358
BseNI	ACTGG	2 cut(s)	68, 247
BseXI	GCAGC	1 cut(s)	126
BseYI	CCCAGC	1 cut(s)	8
BsgI	GTGCAG	1 cut(s)	133
BshFI	GGCC	1 cut(s)	13
BshTI	ACCGGT	2 cut(s)	214, 349
BshVI	ATCGAT	1 cut(s)	407
BsiSI	CCGG	3 cut(s)	165, 215, 350
BslI	CCNNNNNNNGG	2 cut(s)	164, 356
BsmAI	GTCTC	1 cut(s)	200
BsmBI	CGTCTC	1 cut(s)	200
BsnI	GGCC	1 cut(s)	13
Bsp143I	GATC	3 cut(s)	228, 289, 332
BspANI	GGCC	1 cut(s)	13
BspCNI	CTCAG	1 cut(s)	357
BspDI	ATCGAT	1 cut(s)	407
BspHI	TCATGA	1 cut(s)	225
BsrFI	RCCGGY	2 cut(s)	214, 349
BsrI	ACTGG	2 cut(s)	68, 247
BssAI	RCCGGY	2 cut(s)	214, 349
BssECI	CCNNGG	1 cut(s)	382
BssMI	GATC	3 cut(s)	228, 289, 332
BssNAI	GTATAC	1 cut(s)	162
BssT1I	CCWWGG	1 cut(s)	382
Bst1107I	GTATAC	1 cut(s)	162
Bst6I	CTCTTC	1 cut(s)	345
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	344
BstF5I	GGATG	1 cut(s)	271
BstKTI	GATC	3 cut(s)	231, 292, 335
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	3 cut(s)	228, 289, 332
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 19, 120, 443
BstNSI	RCATGY	2 cut(s)	22, 151
BstSCI	CCNGG	1 cut(s)	164
BstV1I	GCAGC	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	332
BstZ17I	GTATAC	1 cut(s)	162
Bsu15I	ATCGAT	1 cut(s)	407
BsuRI	GGCC	1 cut(s)	13
BsuTUI	ATCGAT	1 cut(s)	407
BtsCI	GGATG	1 cut(s)	271
Cac8I	GCNNGC	1 cut(s)	6
CciI	TCATGA	1 cut(s)	225
Cfr10I	RCCGGY	2 cut(s)	214, 349
Cfr13I	GGNCC	1 cut(s)	11
ClaI	ATCGAT	1 cut(s)	407
CseI	GACGC	1 cut(s)	100
CspAI	ACCGGT	2 cut(s)	214, 349
CviAII	CATG	6 cut(s)	19, 148, 226, 287, 311, 438
CviJI	RGCY	6 cut(s)	8, 13, 76, 197, 389, 446
CviKI_1	RGCY	6 cut(s)	8, 13, 76, 197, 389, 446
DdeI	CTNAG	1 cut(s)	344
DpnI	GATC	3 cut(s)	230, 291, 334
DpnII	GATC	3 cut(s)	228, 289, 332
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Eco130I	CCWWGG	1 cut(s)	382
Eco32I	GATATC	1 cut(s)	405
EcoRI	GAATTC	1 cut(s)	264
EcoRV	GATATC	1 cut(s)	405
EcoT14I	CCWWGG	1 cut(s)	382
ErhI	CCWWGG	1 cut(s)	382
Esp3I	CGTCTC	1 cut(s)	200
FaeI	CATG	6 cut(s)	22, 151, 229, 290, 314, 441
FatI	CATG	6 cut(s)	18, 147, 225, 286, 310, 437
FbaI	TGATCA	2 cut(s)	228, 289
FblI	GTMKAC	1 cut(s)	161
Fnu4HI	GCNGC	1 cut(s)	115
FokI	GGATG	1 cut(s)	258
Fsp4HI	GCNGC	1 cut(s)	115
FspBI	CTAG	1 cut(s)	194
GluI	GCNGC	1 cut(s)	115
GsaI	CCCAGC	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	13
HapII	CCGG	3 cut(s)	165, 215, 350
HgaI	GACGC	1 cut(s)	100
Hin1II	CATG	6 cut(s)	22, 151, 229, 290, 314, 441
HincII	GTYRAC	1 cut(s)	399
HindII	GTYRAC	1 cut(s)	399
HinfI	GANTC	3 cut(s)	46, 222, 364
HpaII	CCGG	3 cut(s)	165, 215, 350
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	3 cut(s)	162, 399, 429
Hpy188I	TCNGA	2 cut(s)	240, 347
Hpy188III	TCNNGA	4 cut(s)	43, 226, 275, 430
Hpy8I	GTNNAC	3 cut(s)	162, 399, 429
Hpy99I	CGWCG	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	326
HpyCH4V	TGCA	2 cut(s)	114, 153
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 19, 120, 443
HpyF3I	CTNAG	1 cut(s)	344
HpySE526I	ACGT	1 cut(s)	326
Hsp92II	CATG	6 cut(s)	22, 151, 229, 290, 314, 441
Ksp22I	TGATCA	2 cut(s)	228, 289
Kzo9I	GATC	3 cut(s)	228, 289, 332
LpnPI	CCDG	7 cut(s)	81, 86, 178, 228, 228, 288, 363
Lsp1109I	GCAGC	1 cut(s)	126
MaeI	CTAG	1 cut(s)	194
MaeII	ACGT	1 cut(s)	326
MalI	GATC	3 cut(s)	230, 291, 334
MboI	GATC	3 cut(s)	228, 289, 332
MboII	GAAGA	3 cut(s)	173, 327, 332
MfeI	CAATTG	1 cut(s)	78
MflI	RGATCY	1 cut(s)	332
MluCI	AATT	3 cut(s)	78, 264, 314
MlyI	GAGTC	1 cut(s)	373
MmeI	TCCRAC	1 cut(s)	263
MnlI	CCTC	4 cut(s)	33, 195, 309, 435
MseI	TTAA	2 cut(s)	60, 323
MspI	CCGG	3 cut(s)	165, 215, 350
MspR9I	CCNGG	1 cut(s)	166
MunI	CAATTG	1 cut(s)	78
MwoI	GCNNNNNNNGC	4 cut(s)	10, 19, 120, 443
NciI	CCSGG	1 cut(s)	166
NdeII	GATC	3 cut(s)	228, 289, 332
NlaIII	CATG	6 cut(s)	22, 151, 229, 290, 314, 441
NspI	RCATGY	2 cut(s)	22, 151
PagI	TCATGA	1 cut(s)	225
PciI	ACATGT	1 cut(s)	147
PfeI	GAWTC	2 cut(s)	46, 222
PflFI	GACNNNGTC	1 cut(s)	104
PinAI	ACCGGT	2 cut(s)	214, 349
PkrI	GCNGC	1 cut(s)	116
PleI	GAGTC	1 cut(s)	372
PpsI	GAGTC	1 cut(s)	372
PscI	ACATGT	1 cut(s)	147
PspFI	CCCAGC	1 cut(s)	8
PspPI	GGNCC	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	332
PsyI	GACNNNGTC	1 cut(s)	104
SaqAI	TTAA	2 cut(s)	60, 323
SatI	GCNGC	1 cut(s)	115
Sau3AI	GATC	3 cut(s)	228, 289, 332
Sau96I	GGNCC	1 cut(s)	11
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	1 cut(s)	166
SetI	ASST	4 cut(s)	10, 199, 251, 329
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	3 cut(s)	78, 264, 314
SspMI	CTAG	1 cut(s)	194
StyD4I	CCNGG	1 cut(s)	164
StyI	CCWWGG	1 cut(s)	382
TaiI	ACGT	1 cut(s)	329
TaqI	TCGA	1 cut(s)	407
TasI	AATT	3 cut(s)	78, 264, 314
TfiI	GAWTC	2 cut(s)	46, 222
Tru1I	TTAA	2 cut(s)	60, 323
Tru9I	TTAA	2 cut(s)	60, 323
TseI	GCWGC	1 cut(s)	114
TspDTI	ATGAA	3 cut(s)	214, 297, 327
TspGWI	ACGGA	1 cut(s)	147
Tth111I	GACNNNGTC	1 cut(s)	104
XapI	RAATTY	1 cut(s)	264
XceI	RCATGY	2 cut(s)	22, 151
XmiI	GTMKAC	1 cut(s)	161
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.