FvH4_1g16490

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017578
Physical Location & Seq
Reverse (-)
9506432 .. 9507408
977 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g16490.t1

Sequence Viewer

Length: 636 bp
ATGAAACTCACTGTTTTCGAATATCACTCCTTCTGCAAGTTAGAGAGGAACGTTTTCCTGAATGCACCACGTATGTCGGACTTGTACTTTCACAGATTGGCTGAGAATAAAATACCTGCTCTATTGTCACAATCCAATGCTGCACAGGTTGAGATCTTAACCTGCGGATTATTTTCTGAAAAGATTCTGGTAATGCCAAGAAGTACAATCCAATTTTGGAATCTCAAGCAATTGGAGCTGACTGTCGAGATTATTGATGATCTTGAAGAAGGTTTAGATGTGTTGTTAGTTTTCTCCTTCCTCAAGGCTTCCCCGCTTCTGCAAAGTTCAAATTTAGGCGTTTGTCATCTGCTTTTGTCGTCTCTCCAAAGGCAAGTGAAAGTGAAAGAACTTAAAGAAGTTGAAATCCTTGGATGTGAAGGCAACTGGTGCAAAATTGAACTCGCTATCTATGTGATGCAAAGGGCGCAGTGTCTTGATAAACTTGTCTTCAACCCTTCCGCAAGTCACTATCCAGCAGATGGGGAATGGCTAAAGTCATTCCAGTATTGGTCATGGCTAGAGTGGCGCCGAGAAACAGTACGGAGAAAGCATCAAGCTAAAGTTCCTGCAAGTGTAGAATTAGTATTGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

212

Amino Acids

24.47

Weight (kDa)

6.95

Isoelectric Point (pI)

48.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 45 - 170 4.9e-07 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017578)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16490
rosa_chinensis RchiOBHm_Chr2g0106371 RchiOBHm_Chr2g0106391
rosa_laevigata RLG00000017493 RLG00000017495
rosa_roxburghii Rroxscaffold_2G00137230
rosa_rugosa Rorug02G0135100
rosa_samantha Rh2AG186200 Rh2AG186300 Rh2CG191200 Rh2DG192300 Rh2DG192400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 124, 170
AccB1I GGYRCC 1 cut(s) 567
AccB7I CCANNNNNTGG 1 cut(s) 521
AciI CCGC 3 cut(s) 165, 314, 501
AclI AACGTT 1 cut(s) 51
AcsI RAATTY 1 cut(s) 331
AcyI GRCGYC 1 cut(s) 568
AfaI GTAC 3 cut(s) 86, 205, 582
AfiI CCNNNNNNNGG 1 cut(s) 521
AgsI TTSAA 5 cut(s) 266, 330, 404, 440, 493
AluBI AGCT 2 cut(s) 238, 599
AluI AGCT 2 cut(s) 238, 599
Alw26I GTCTC 1 cut(s) 366
ApeKI GCWGC 1 cut(s) 140
ApoI RAATTY 1 cut(s) 331
Asp700I GAANNNNTTC 2 cut(s) 53, 183
AspLEI GCGC 2 cut(s) 469, 570
AsuII TTCGAA 1 cut(s) 18
BanI GGYRCC 1 cut(s) 567
BbsI GAAGAC 1 cut(s) 481
BbvI GCAGC 1 cut(s) 127
BccI CCATC 1 cut(s) 515
BcoDI GTCTC 1 cut(s) 366
BfaI CTAG 1 cut(s) 560
BfoI RGCGCY 1 cut(s) 571
BfuAI ACCTGC 2 cut(s) 124, 170
BglII AGATCT 1 cut(s) 153
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 569
BmsI GCATC 2 cut(s) 447, 601
BpiI GAAGAC 1 cut(s) 481
Bpu14I TTCGAA 1 cut(s) 18
BpuEI CTTGAG 2 cut(s) 209, 287
BsaAI YACGTR 1 cut(s) 71
BsaHI GRCGYC 1 cut(s) 568
BsaJI CCNNGG 1 cut(s) 409
Bsc4I CCNNNNNNNGG 1 cut(s) 521
Bse1I ACTGG 2 cut(s) 431, 544
BseDI CCNNGG 1 cut(s) 409
BseGI GGATG 1 cut(s) 419
BseLI CCNNNNNNNGG 1 cut(s) 521
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 2 cut(s) 431, 544
BseXI GCAGC 1 cut(s) 127
BsgI GTGCAG 1 cut(s) 126
BshNI GGYRCC 1 cut(s) 567
BslI CCNNNNNNNGG 1 cut(s) 521
BsmAI GTCTC 1 cut(s) 366
BsmBI CGTCTC 1 cut(s) 366
BsmI GAATGC 1 cut(s) 67
Bsp119I TTCGAA 1 cut(s) 18
Bsp143I GATC 2 cut(s) 153, 259
BspACI CCGC 3 cut(s) 165, 314, 501
BspCNI CTCAG 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 569
BspMI ACCTGC 2 cut(s) 124, 170
BspT104I TTCGAA 1 cut(s) 18
BspT107I GGYRCC 1 cut(s) 567
BsrI ACTGG 2 cut(s) 431, 544
BssECI CCNNGG 1 cut(s) 409
BssMI GATC 2 cut(s) 153, 259
BssNI GRCGYC 1 cut(s) 568
BssT1I CCWWGG 1 cut(s) 409
Bst4CI ACNGT 3 cut(s) 13, 244, 580
BstACI GRCGYC 1 cut(s) 568
BstAPI GCANNNNNTGC 1 cut(s) 429
BstBAI YACGTR 1 cut(s) 71
BstBI TTCGAA 1 cut(s) 18
BstDEI CTNAG 1 cut(s) 102
BstF5I GGATG 1 cut(s) 419
BstH2I RGCGCY 1 cut(s) 571
BstHHI GCGC 2 cut(s) 469, 570
BstKTI GATC 2 cut(s) 156, 262
BstMAI GTCTC 1 cut(s) 366
BstMBI GATC 2 cut(s) 153, 259
BstMWI GCNNNNNNNGC 4 cut(s) 235, 429, 466, 565
BstV1I GCAGC 1 cut(s) 127
BstV2I GAAGAC 1 cut(s) 481
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
BtsCI GGATG 1 cut(s) 419
BtsI GCAGTG 1 cut(s) 476
BtsIMutI CAGTG 2 cut(s) 9, 476
BveI ACCTGC 2 cut(s) 124, 170
CfoI GCGC 2 cut(s) 469, 570
Csp6I GTAC 3 cut(s) 85, 204, 581
CviAII CATG 1 cut(s) 555
CviJI RGCY 6 cut(s) 101, 238, 308, 532, 559, 599
CviKI_1 RGCY 6 cut(s) 101, 238, 308, 532, 559, 599
CviQI GTAC 3 cut(s) 85, 204, 581
DdeI CTNAG 1 cut(s) 102
DinI GGCGCC 1 cut(s) 569
DpnI GATC 2 cut(s) 155, 261
DpnII GATC 2 cut(s) 153, 259
Eco130I CCWWGG 1 cut(s) 409
EcoT14I CCWWGG 1 cut(s) 409
EgeI GGCGCC 1 cut(s) 569
EheI GGCGCC 1 cut(s) 569
ErhI CCWWGG 1 cut(s) 409
Esp3I CGTCTC 1 cut(s) 366
FaeI CATG 1 cut(s) 558
FaiI YATR 4 cut(s) 74, 453, 556, 634
FatI CATG 1 cut(s) 554
FauI CCCGC 1 cut(s) 321
Fnu4HI GCNGC 1 cut(s) 141
FokI GGATG 1 cut(s) 426
Fsp4HI GCNGC 1 cut(s) 141
FspBI CTAG 1 cut(s) 560
GlaI GCGC 2 cut(s) 468, 569
GluI GCNGC 1 cut(s) 141
HaeII RGCGCY 1 cut(s) 571
HhaI GCGC 2 cut(s) 469, 570
Hin1I GRCGYC 1 cut(s) 568
Hin1II CATG 1 cut(s) 558
Hin6I GCGC 2 cut(s) 467, 568
HinP1I GCGC 2 cut(s) 467, 568
HinfI GANTC 2 cut(s) 184, 220
Hpy188I TCNGA 2 cut(s) 79, 178
Hpy188III TCNNGA 4 cut(s) 58, 247, 263, 476
HpyAV CCTTC 5 cut(s) 40, 263, 307, 413, 507
HpyCH4III ACNGT 3 cut(s) 13, 244, 580
HpyCH4IV ACGT 2 cut(s) 51, 70
HpyCH4V TGCA 7 cut(s) 36, 65, 143, 322, 432, 460, 611
HpyF10VI GCNNNNNNNGC 4 cut(s) 235, 429, 466, 565
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 2 cut(s) 51, 70
Hsp92I GRCGYC 1 cut(s) 568
Hsp92II CATG 1 cut(s) 558
HspAI GCGC 2 cut(s) 467, 568
KasI GGCGCC 1 cut(s) 567
Kzo9I GATC 2 cut(s) 153, 259
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 9 cut(s) 71, 129, 131, 173, 175, 412, 528, 557, 621
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 2 cut(s) 447, 601
MaeI CTAG 1 cut(s) 560
MaeII ACGT 2 cut(s) 51, 70
MaeIII GTNAC 2 cut(s) 126, 506
MalI GATC 2 cut(s) 155, 261
MboI GATC 2 cut(s) 153, 259
MboII GAAGA 2 cut(s) 278, 481
MfeI CAATTG 1 cut(s) 230
MflI RGATCY 1 cut(s) 153
MluCI AATT 5 cut(s) 212, 230, 331, 435, 620
Mly113I GGCGCC 1 cut(s) 568
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 2 cut(s) 39, 311
MroXI GAANNNNTTC 2 cut(s) 53, 183
MseI TTAA 2 cut(s) 158, 393
MunI CAATTG 1 cut(s) 230
Mva1269I GAATGC 1 cut(s) 67
MwoI GCNNNNNNNGC 4 cut(s) 235, 429, 466, 565
NarI GGCGCC 1 cut(s) 568
NdeII GATC 2 cut(s) 153, 259
NlaIII CATG 1 cut(s) 558
NlaIV GGNNCC 1 cut(s) 569
NmeAIII GCCGAG 1 cut(s) 596
NmuCI GTSAC 2 cut(s) 126, 506
NspV TTCGAA 1 cut(s) 18
PctI GAATGC 1 cut(s) 67
PdmI GAANNNNTTC 2 cut(s) 53, 183
PfeI GAWTC 2 cut(s) 184, 220
PflMI CCANNNNNTGG 1 cut(s) 521
PkrI GCNGC 1 cut(s) 142
PluTI GGCGCC 1 cut(s) 571
Ppu21I YACGTR 1 cut(s) 71
Psp1406I AACGTT 1 cut(s) 51
PspN4I GGNNCC 1 cut(s) 569
PsuI RGATCY 1 cut(s) 153
RsaI GTAC 3 cut(s) 86, 205, 582
RsaNI GTAC 3 cut(s) 85, 204, 581
SaqAI TTAA 2 cut(s) 158, 393
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 2 cut(s) 153, 259
SetI ASST 8 cut(s) 54, 73, 118, 150, 164, 240, 274, 601
SfaNI GCATC 2 cut(s) 447, 601
SfoI GGCGCC 1 cut(s) 569
SfuI TTCGAA 1 cut(s) 18
SmlI CTYRAG 2 cut(s) 224, 302
SmoI CTYRAG 2 cut(s) 224, 302
Sse9I AATT 5 cut(s) 212, 230, 331, 435, 620
SsiI CCGC 3 cut(s) 165, 314, 501
SspDI GGCGCC 1 cut(s) 567
SspMI CTAG 1 cut(s) 560
StyI CCWWGG 1 cut(s) 409
TaaI ACNGT 3 cut(s) 13, 244, 580
TaiI ACGT 2 cut(s) 54, 73
TaqI TCGA 2 cut(s) 18, 246
TasI AATT 5 cut(s) 212, 230, 331, 435, 620
TatI WGTACW 2 cut(s) 84, 203
TfiI GAWTC 2 cut(s) 184, 220
Tru1I TTAA 2 cut(s) 158, 393
Tru9I TTAA 2 cut(s) 158, 393
TscAI CASTG 2 cut(s) 16, 476
TseFI GTSAC 2 cut(s) 126, 506
TseI GCWGC 1 cut(s) 140
Tsp45I GTSAC 2 cut(s) 126, 506
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 598
TspRI CASTG 2 cut(s) 16, 476
Van91I CCANNNNNTGG 1 cut(s) 521
XapI RAATTY 1 cut(s) 331
XmnI GAANNNNTTC 2 cut(s) 53, 183
XspI CTAG 1 cut(s) 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.