Rh2DG192400

Carbon catabolite repressor protein 4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0017578
Physical Location & Seq
Reverse (-)
17512495 .. 17516046
3552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG192400.1

Sequence Viewer

Length: 1005 bp
ATGATCAGATATGGCTCATCAGCTGCAGTGGCTGATCTGCAAGAAATGGATACATTCACAGTGCTGACATATAATCTGATGACACATGTTCCTGGTTCTGCTTCGGAAGATCTTGGGTGGGCCGCATCGTGGCATTATCGGCAGAAGAGATTAGTAGGTGAGATAACAGGATATCGTGCTGATATCCTTTGTTTTCAAGAAATCTATCAGAATGACTTCCGTACATGGTTTGAGCCGGAGCTACTGAAATTTGGATATGCAGGAATATTCAAGAAGAGATCTAATCCTAATTTGAAGGATGGATGTGCGACCTTTTATTTGAATAACCGATTTCGAAACCTAAATACATATGAGATTGAATTTGACACACTGGCAGATGAGGTTGCAATGAAATTTGGGACTCCACAGGAGACGGAGGAAGTTAAAATCCATCTTTCAACGGGGAATATAGCTGTGTGTGTCCTTCTAGAAAAAATTGATGGCTCTAATGGAAAACTTTGCGTGGCAAATACTCATATCTGCCCAATGTCTCATCAAAGAGGAGTATCCCTCTTTCAGATTGTCAGTTATGTACATGAGGTAGAAAAGTTTGCTGCCGATCCTAAGGTTCCTTTTATACTATGTGGAGATTTCAATGCTGATCCTGAAAGAAATAAGATTGTAGCGTCACATTCAGAATGCCGTGAGAAGGCGGTATTCAAGCATTTGAAGCCGAAGCGTGGAACCTCCCTTGTAAGTGCTTATGCACATTTCTTCGGGTCTCTGCCTCCTGGTCATCCTTATCGTCAGAAAAAGCATGAAACATTGAATGAGCCTTGCTTCACATTTCTGAAATACCCCGTGGATAATGTGCTTGATTACATATTTTATACAGATGGGTCTCTACATCATGATGGAGTTCTTGAGCTTCCTAATCTCCGGAAGACTGATATTCTTCCTTCGATTTATTGGTCATCAGACCATATTGTTAATGTGAGTCATAGTTCCCTATTAGGAATAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Exo_endo_phos zf-C6H2

Protein Analysis

334

Amino Acids

37.97

Weight (kDa)

6.2

Isoelectric Point (pI)

35.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 25 - 321 1.6e-15 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017578)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16490
rosa_chinensis RchiOBHm_Chr2g0106371 RchiOBHm_Chr2g0106391
rosa_laevigata RLG00000017493 RLG00000017495
rosa_roxburghii Rroxscaffold_2G00137230
rosa_rugosa Rorug02G0135100
rosa_samantha Rh2AG186200 Rh2AG186300 Rh2CG191200 Rh2DG192300 Rh2DG192400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 918
AciI CCGC 2 cut(s) 123, 692
AclWI GGATC 2 cut(s) 593, 635
AcsI RAATTY 3 cut(s) 248, 359, 392
AfaI GTAC 2 cut(s) 223, 573
AfiI CCNNNNNNNGG 3 cut(s) 129, 688, 719
AflIII ACRYGT 1 cut(s) 85
AjnI CCWGG 2 cut(s) 91, 769
AluBI AGCT 4 cut(s) 23, 241, 452, 907
AluI AGCT 4 cut(s) 23, 241, 452, 907
Alw26I GTCTC 4 cut(s) 404, 534, 765, 885
AlwI GGATC 2 cut(s) 593, 635
AlwNI CAGNNNCTG 1 cut(s) 32
Aor13HI TCCGGA 1 cut(s) 918
AoxI GGCC 1 cut(s) 120
ApeKI GCWGC 2 cut(s) 23, 593
ApoI RAATTY 3 cut(s) 248, 359, 392
ArsI GACNNNNNNTTYG 2 cut(s) 301, 333
Asp700I GAANNNNTTC 1 cut(s) 215
AspS9I GGNCC 1 cut(s) 120
AsuHPI GGTGA 1 cut(s) 170
AsuII TTCGAA 1 cut(s) 334
AxyI CCTNAGG 1 cut(s) 603
BbsI GAAGAC 1 cut(s) 929
BbvI GCAGC 2 cut(s) 10, 580
BccI CCATC 5 cut(s) 293, 438, 473, 869, 887
BceAI ACGGC 1 cut(s) 666
BciT130I CCWGG 2 cut(s) 93, 771
BciVI GTATCC 2 cut(s) 43, 556
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 4 cut(s) 404, 534, 765, 885
BfaI CTAG 1 cut(s) 467
BfmI CTRYAG 1 cut(s) 24
BfuI GTATCC 2 cut(s) 43, 556
BglII AGATCT 2 cut(s) 109, 278
BisI GCNGC 3 cut(s) 24, 123, 594
BlsI GCNGC 3 cut(s) 25, 124, 595
Bme1390I CCNGG 2 cut(s) 93, 771
BmgT120I GGNCC 1 cut(s) 120
BmiI GGNNCC 2 cut(s) 609, 724
BmrFI CCNGG 2 cut(s) 93, 771
BmsI GCATC 1 cut(s) 134
BpiI GAAGAC 1 cut(s) 929
BplI GAGNNNNNCTC 2 cut(s) 534, 566
Bpu14I TTCGAA 1 cut(s) 334
BpuEI CTTGAG 1 cut(s) 923
BsaI GGTCTC 2 cut(s) 765, 885
BsaJI CCNNGG 1 cut(s) 840
BsaWI WCCGGW 1 cut(s) 918
Bsc4I CCNNNNNNNGG 3 cut(s) 129, 688, 719
Bse1I ACTGG 1 cut(s) 375
Bse21I CCTNAGG 1 cut(s) 603
Bse3DI GCAATG 1 cut(s) 393
BseAI TCCGGA 1 cut(s) 918
BseBI CCWGG 2 cut(s) 93, 771
BseDI CCNNGG 1 cut(s) 840
BseGI GGATG 3 cut(s) 304, 308, 775
BseLI CCNNNNNNNGG 3 cut(s) 129, 688, 719
BseMI GCAATG 1 cut(s) 393
BseNI ACTGG 1 cut(s) 375
BseRI GAGGAG 1 cut(s) 555
BseXI GCAGC 2 cut(s) 10, 580
BshFI GGCC 1 cut(s) 122
BsiSI CCGG 2 cut(s) 236, 919
BslFI GGGAC 1 cut(s) 412
BslI CCNNNNNNNGG 3 cut(s) 129, 688, 719
BsmAI GTCTC 4 cut(s) 404, 534, 765, 885
BsmBI CGTCTC 1 cut(s) 404
BsmFI GGGAC 1 cut(s) 412
BsmI GAATGC 1 cut(s) 683
BsnI GGCC 1 cut(s) 122
Bso31I GGTCTC 2 cut(s) 765, 885
Bsp119I TTCGAA 1 cut(s) 334
Bsp13I TCCGGA 1 cut(s) 918
Bsp1407I TGTACA 1 cut(s) 571
Bsp143I GATC 6 cut(s) 3, 34, 109, 278, 598, 640
BspACI CCGC 2 cut(s) 123, 692
BspANI GGCC 1 cut(s) 122
BspEI TCCGGA 1 cut(s) 918
BspHI TCATGA 1 cut(s) 889
BspLI GGNNCC 2 cut(s) 609, 724
BspMAI CTGCAG 1 cut(s) 28
BspPI GGATC 2 cut(s) 593, 635
BspT104I TTCGAA 1 cut(s) 334
BspTNI GGTCTC 2 cut(s) 765, 885
BsrDI GCAATG 1 cut(s) 393
BsrGI TGTACA 1 cut(s) 571
BsrI ACTGG 1 cut(s) 375
BssECI CCNNGG 1 cut(s) 840
BssMI GATC 6 cut(s) 3, 34, 109, 278, 598, 640
Bst2UI CCWGG 2 cut(s) 93, 771
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 2 cut(s) 140, 269
BstAUI TGTACA 1 cut(s) 571
BstBI TTCGAA 1 cut(s) 334
BstDEI CTNAG 1 cut(s) 603
BstDSI CCRYGG 1 cut(s) 840
BstF5I GGATG 3 cut(s) 304, 308, 775
BstKTI GATC 6 cut(s) 6, 37, 112, 281, 601, 643
BstMAI GTCTC 4 cut(s) 404, 534, 765, 885
BstMBI GATC 6 cut(s) 3, 34, 109, 278, 598, 640
BstMWI GCNNNNNNNGC 3 cut(s) 29, 139, 709
BstNI CCWGG 2 cut(s) 93, 771
BstNSI RCATGY 1 cut(s) 89
BstSCI CCNGG 2 cut(s) 91, 769
BstSFI CTRYAG 1 cut(s) 24
BstV1I GCAGC 2 cut(s) 10, 580
BstV2I GAAGAC 1 cut(s) 929
BstX2I RGATCY 2 cut(s) 109, 278
BstYI RGATCY 2 cut(s) 109, 278
Bsu36I CCTNAGG 1 cut(s) 603
BsuI GTATCC 2 cut(s) 43, 556
BsuRI GGCC 1 cut(s) 122
BtgI CCRYGG 1 cut(s) 840
BtsCI GGATG 3 cut(s) 304, 308, 775
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 3 cut(s) 33, 66, 368
CaiI CAGNNNCTG 1 cut(s) 32
CciI TCATGA 1 cut(s) 889
Cfr13I GGNCC 1 cut(s) 120
CseI GACGC 1 cut(s) 654
Csp6I GTAC 2 cut(s) 222, 572
CviAII CATG 5 cut(s) 86, 225, 575, 797, 890
CviQI GTAC 2 cut(s) 222, 572
DdeI CTNAG 1 cut(s) 603
DpnI GATC 6 cut(s) 5, 36, 111, 280, 600, 642
DpnII GATC 6 cut(s) 3, 34, 109, 278, 598, 640
Eam1104I CTCTTC 2 cut(s) 140, 269
EarI CTCTTC 2 cut(s) 140, 269
Eco31I GGTCTC 2 cut(s) 765, 885
Eco32I GATATC 2 cut(s) 173, 184
Eco81I CCTNAGG 1 cut(s) 603
EcoRII CCWGG 2 cut(s) 91, 769
EcoRV GATATC 2 cut(s) 173, 184
Esp3I CGTCTC 1 cut(s) 404
FaeI CATG 5 cut(s) 89, 228, 578, 800, 893
FaqI GGGAC 1 cut(s) 412
FatI CATG 5 cut(s) 85, 224, 574, 796, 889
FauNDI CATATG 1 cut(s) 349
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 3 cut(s) 24, 123, 594
FokI GGATG 3 cut(s) 311, 315, 762
Fsp4HI GCNGC 3 cut(s) 24, 123, 594
FspBI CTAG 1 cut(s) 467
GluI GCNGC 3 cut(s) 24, 123, 594
HaeIII GGCC 1 cut(s) 122
HapII CCGG 2 cut(s) 236, 919
HgaI GACGC 1 cut(s) 654
Hin1II CATG 5 cut(s) 89, 228, 578, 800, 893
HinfI GANTC 2 cut(s) 400, 976
HpaII CCGG 2 cut(s) 236, 919
HphI GGTGA 1 cut(s) 170
Hpy188I TCNGA 9 cut(s) 8, 78, 106, 210, 558, 676, 789, 831, 958
Hpy188III TCNNGA 7 cut(s) 197, 271, 467, 644, 890, 902, 919
HpyAV CCTTC 4 cut(s) 289, 473, 682, 948
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 5 cut(s) 26, 40, 260, 386, 746
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 139, 709
HpyF3I CTNAG 1 cut(s) 603
Hsp92II CATG 5 cut(s) 89, 228, 578, 800, 893
Kpn2I TCCGGA 1 cut(s) 918
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 6 cut(s) 3, 34, 109, 278, 598, 640
LmnI GCTCC 1 cut(s) 238
Lsp1109I GCAGC 2 cut(s) 10, 580
LweI GCATC 1 cut(s) 134
MaeI CTAG 1 cut(s) 467
MaeIII GTNAC 1 cut(s) 666
MalI GATC 6 cut(s) 5, 36, 111, 280, 600, 642
MboI GATC 6 cut(s) 3, 34, 109, 278, 598, 640
MboII GAAGA 6 cut(s) 119, 157, 286, 745, 926, 934
MflI RGATCY 2 cut(s) 109, 278
MluCI AATT 5 cut(s) 248, 289, 359, 392, 474
MlyI GAGTC 2 cut(s) 394, 985
MnlI CCTC 7 cut(s) 373, 409, 533, 560, 571, 736, 777
MroI TCCGGA 1 cut(s) 918
MroXI GAANNNNTTC 1 cut(s) 215
MseI TTAA 2 cut(s) 423, 969
MslI CAYNNNNRTG 1 cut(s) 891
MspA1I CMGCKG 1 cut(s) 23
MspI CCGG 2 cut(s) 236, 919
MspR9I CCNGG 2 cut(s) 93, 771
Mva1269I GAATGC 1 cut(s) 683
MvaI CCWGG 2 cut(s) 93, 771
MwoI GCNNNNNNNGC 3 cut(s) 29, 139, 709
NdeI CATATG 1 cut(s) 349
NdeII GATC 6 cut(s) 3, 34, 109, 278, 598, 640
NlaIII CATG 5 cut(s) 89, 228, 578, 800, 893
NlaIV GGNNCC 2 cut(s) 609, 724
NmuCI GTSAC 1 cut(s) 666
NspI RCATGY 1 cut(s) 89
NspV TTCGAA 1 cut(s) 334
PagI TCATGA 1 cut(s) 889
PciI ACATGT 1 cut(s) 85
PctI GAATGC 1 cut(s) 683
PdmI GAANNNNTTC 1 cut(s) 215
PkrI GCNGC 3 cut(s) 25, 124, 595
PleI GAGTC 2 cut(s) 394, 984
PpsI GAGTC 2 cut(s) 394, 984
PscI ACATGT 1 cut(s) 85
Psp6I CCWGG 2 cut(s) 91, 769
PspGI CCWGG 2 cut(s) 91, 769
PspN4I GGNNCC 2 cut(s) 609, 724
PspPI GGNCC 1 cut(s) 120
PstI CTGCAG 1 cut(s) 28
PstNI CAGNNNCTG 1 cut(s) 32
PsuI RGATCY 2 cut(s) 109, 278
PvuII CAGCTG 1 cut(s) 23
RsaI GTAC 2 cut(s) 223, 573
RsaNI GTAC 2 cut(s) 222, 572
RseI CAYNNNNRTG 1 cut(s) 891
SaqAI TTAA 2 cut(s) 423, 969
SatI GCNGC 3 cut(s) 24, 123, 594
Sau3AI GATC 6 cut(s) 3, 34, 109, 278, 598, 640
Sau96I GGNCC 1 cut(s) 120
SchI GAGTC 2 cut(s) 394, 985
ScrFI CCNGG 2 cut(s) 93, 771
SfaNI GCATC 1 cut(s) 134
SfcI CTRYAG 1 cut(s) 24
SfuI TTCGAA 1 cut(s) 334
SmiMI CAYNNNNRTG 1 cut(s) 891
SmlI CTYRAG 1 cut(s) 902
SmoI CTYRAG 1 cut(s) 902
Sse9I AATT 5 cut(s) 248, 289, 359, 392, 474
SsiI CCGC 2 cut(s) 123, 692
SspI AATATT 1 cut(s) 267
SspMI CTAG 1 cut(s) 467
StyD4I CCNGG 2 cut(s) 91, 769
TaaI ACNGT 1 cut(s) 61
TaqI TCGA 2 cut(s) 334, 941
TasI AATT 5 cut(s) 248, 289, 359, 392, 474
TatI WGTACW 1 cut(s) 571
TauI GCSGC 1 cut(s) 125
Tru1I TTAA 2 cut(s) 423, 969
Tru9I TTAA 2 cut(s) 423, 969
TscAI CASTG 3 cut(s) 33, 66, 375
TseFI GTSAC 1 cut(s) 666
TseI GCWGC 2 cut(s) 23, 593
Tsp45I GTSAC 1 cut(s) 666
TspDTI ATGAA 2 cut(s) 404, 813
TspGWI ACGGA 2 cut(s) 209, 428
TspRI CASTG 3 cut(s) 33, 66, 375
XapI RAATTY 3 cut(s) 248, 359, 392
XbaI TCTAGA 1 cut(s) 466
XceI RCATGY 1 cut(s) 89
XmnI GAANNNNTTC 1 cut(s) 215
XspI CTAG 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.