RLG00000017493

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017578
Physical Location & Seq
Reverse (-)
17494712 .. 17496344
1633 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017493

Sequence Viewer

Length: 1203 bp
ATGATGAAAACCCGTTTGCTGTCAAAAAGATGGCAAGGGCTCTGGGCGTTGAGGAGAGATCTTACTTTTGATTTTTTCAACGTGTGCGATGACGTTGTTAAAATTCTTGAGAATGTAAGGTTCAGGAATGACCTTGAATACTATGCCAGGATTAATGAGGACTATGTGAAACGAGTTTATGAATTCATGCAGACTTTTCCAGGAGAGAAGATAGATTTCTTAAGCCTGTTTTACTTTGGTGATACTACCTCTACAGATGAGTCCATTGTTGATAAATGTGTTGGACATGCCATTGCAAAGGGAGTTGAACAGATTGATATGATCTCTGCGTCAATGTTGCCGCATTTCAGGCTTACTGAAGATTTGTTTAAATATCTGCTCTCCGATCCTGTCACACCGCTAAGAGTGTTGCGCCTGATAGCCTGCCGGTTTGAATTTGATTTAGAGATTGTTAGTCCATCCCTTCACCATTTTGAGATGATCGAGTGTTTCCACCTAGGGACTCTTACAATTTCTGCCATTAAACTCACTGTTTTTGAATATCACTGGTTCTACAAGTACGAGAGGAACCTTTTCCTGAATGCTCCACAGTTGACGAACATGTACTTTCACAAATTGGCTGAGAATCAGATACCTGCTGCAATTTCACAATTCAGTGCTACACAGGTTGAAAATCTTAACCTGCGTATAGTTACTGAAAAGGTAATGCCAAGAAGCATAACCCCATTTTGGAATCTCAAGCAATTGGAGCTGACTGTTGAGAGTGTTGATATTGAAGAAGGTTTAGATGTGTTGTTAGTTTTCTCCTTCCTCAAGGCTTCCCCGCTTCTGCAAAAGCTCAAATTTAGGCGTTGGTCATCTGCTCCTGACGTCTCTCAGAAGCCAAATGAAAGTGAAAGATGGACGTTACACCAGGAATTCAGCCATAATGAACTTCAAGAAGTTGAAATTCTTGGATGTGTAGGCAATTGGTGCGAAATTGAACTCGCTATTTACTTGATGCAAAGGTCACGGTGTCTTGATAAACTTGTCTTTAACCCCTCCCGAAGTCCCTATCCTGGAGGTGGGAAATGGGATAAAGCTATTGTTAGTGGCCGTGAACGGCCAAAGTCATGCCAGCATTGGCTAGAGTCGGGCCGGGAAACAGTCCGGGAAAAGCTTCAAGATAAAGTTCCTGCAAGTGTAAAACTTCTCTTGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

401

Amino Acids

46.87

Weight (kDa)

6.24

Isoelectric Point (pI)

51.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 104 - 398 9.3e-21 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017578)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16490
rosa_chinensis RchiOBHm_Chr2g0106371 RchiOBHm_Chr2g0106391
rosa_laevigata RLG00000017493 RLG00000017495
rosa_roxburghii Rroxscaffold_2G00137230
rosa_rugosa Rorug02G0135100
rosa_samantha Rh2AG186200 Rh2AG186300 Rh2CG191200 Rh2DG192300 Rh2DG192400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 873
Acc36I ACCTGC 2 cut(s) 643, 690
AciI CCGC 3 cut(s) 341, 398, 824
AclWI GGATC 1 cut(s) 380
AcoI YGGCCR 2 cut(s) 1093, 1103
AcsI RAATTY 6 cut(s) 102, 182, 434, 842, 917, 948
AcuI CTGAAG 1 cut(s) 378
AcyI GRCGYC 1 cut(s) 870
AfaI GTAC 2 cut(s) 560, 605
AfiI CCNNNNNNNGG 3 cut(s) 729, 1058, 1064
AflII CTTAAG 1 cut(s) 220
AflIII ACRYGT 2 cut(s) 81, 600
AjnI CCWGG 4 cut(s) 146, 199, 912, 1057
AluBI AGCT 4 cut(s) 751, 838, 1082, 1159
AluI AGCT 4 cut(s) 751, 838, 1082, 1159
Alw26I GTCTC 1 cut(s) 877
AlwI GGATC 1 cut(s) 380
AoxI GGCC 3 cut(s) 1093, 1103, 1135
ApeKI GCWGC 1 cut(s) 638
ApoI RAATTY 6 cut(s) 102, 182, 434, 842, 917, 948
AseI ATTAAT 1 cut(s) 153
Asp700I GAANNNNTTC 2 cut(s) 572, 1158
AspA2I CCTAGG 1 cut(s) 496
AspLEI GCGC 1 cut(s) 414
AspS9I GGNCC 1 cut(s) 1135
AsuC2I CCSGG 2 cut(s) 1139, 1151
AsuHPI GGTGA 2 cut(s) 251, 458
AvrII CCTAGG 1 cut(s) 496
BanII GRGCYC 1 cut(s) 42
BbvI GCAGC 1 cut(s) 625
BccI CCATC 3 cut(s) 24, 466, 894
BceAI ACGGC 2 cut(s) 1080, 1118
BciT130I CCWGG 4 cut(s) 148, 201, 914, 1059
BcnI CCSGG 2 cut(s) 1139, 1151
BcoDI GTCTC 1 cut(s) 877
BfaI CTAG 2 cut(s) 497, 1127
BfmI CTRYAG 1 cut(s) 252
BfrI CTTAAG 1 cut(s) 220
BfuAI ACCTGC 2 cut(s) 643, 690
BglII AGATCT 1 cut(s) 58
BisI GCNGC 2 cut(s) 341, 639
BlnI CCTAGG 1 cut(s) 496
BlsI GCNGC 2 cut(s) 342, 640
Bme1390I CCNGG 6 cut(s) 148, 201, 914, 1059, 1139, 1151
BmgT120I GGNCC 1 cut(s) 1135
BmiI GGNNCC 1 cut(s) 569
BmrFI CCNGG 6 cut(s) 148, 201, 914, 1059, 1139, 1151
BmsI GCATC 1 cut(s) 990
BpmI CTGGAG 1 cut(s) 1080
BpuEI CTTGAG 3 cut(s) 128, 722, 797
BpuMI CCSGG 2 cut(s) 1139, 1151
BsaHI GRCGYC 1 cut(s) 870
BsaJI CCNNGG 1 cut(s) 496
Bsc4I CCNNNNNNNGG 3 cut(s) 729, 1058, 1064
Bse118I RCCGGY 1 cut(s) 426
Bse1I ACTGG 1 cut(s) 551
Bse3DI GCAATG 1 cut(s) 291
BseBI CCWGG 4 cut(s) 148, 201, 914, 1059
BseDI CCNNGG 1 cut(s) 496
BseGI GGATG 2 cut(s) 458, 962
BseLI CCNNNNNNNGG 3 cut(s) 729, 1058, 1064
BseMI GCAATG 1 cut(s) 291
BseMII CTCAG 2 cut(s) 612, 890
BseNI ACTGG 1 cut(s) 551
BseRI GAGGAG 1 cut(s) 67
BseXI GCAGC 1 cut(s) 625
BshFI GGCC 3 cut(s) 1095, 1105, 1137
BsiSI CCGG 3 cut(s) 427, 1138, 1150
BslFI GGGAC 2 cut(s) 514, 1035
BslI CCNNNNNNNGG 3 cut(s) 729, 1058, 1064
BsmAI GTCTC 1 cut(s) 877
BsmBI CGTCTC 1 cut(s) 877
BsmFI GGGAC 2 cut(s) 514, 1035
BsmI GAATGC 1 cut(s) 586
BsnI GGCC 3 cut(s) 1095, 1105, 1137
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 4 cut(s) 58, 321, 385, 480
BspACI CCGC 3 cut(s) 341, 398, 824
BspANI GGCC 3 cut(s) 1095, 1105, 1137
BspCNI CTCAG 2 cut(s) 613, 889
BspLI GGNNCC 1 cut(s) 569
BspMI ACCTGC 2 cut(s) 643, 690
BspPI GGATC 1 cut(s) 380
BspTI CTTAAG 1 cut(s) 220
BsrDI GCAATG 1 cut(s) 291
BsrFI RCCGGY 1 cut(s) 426
BsrI ACTGG 1 cut(s) 551
BssAI RCCGGY 1 cut(s) 426
BssECI CCNNGG 1 cut(s) 496
BssMI GATC 4 cut(s) 58, 321, 385, 480
BssNI GRCGYC 1 cut(s) 870
BssT1I CCWWGG 1 cut(s) 496
Bst2UI CCWGG 4 cut(s) 148, 201, 914, 1059
Bst4CI ACNGT 5 cut(s) 532, 591, 757, 1014, 1147
BstACI GRCGYC 1 cut(s) 870
BstAFI CTTAAG 1 cut(s) 220
BstAPI GCANNNNNTGC 1 cut(s) 972
BstC8I GCNNGC 2 cut(s) 424, 1118
BstDEI CTNAG 3 cut(s) 401, 621, 876
BstF5I GGATG 2 cut(s) 458, 962
BstHHI GCGC 1 cut(s) 414
BstKTI GATC 4 cut(s) 61, 324, 388, 483
BstMAI GTCTC 1 cut(s) 877
BstMBI GATC 4 cut(s) 58, 321, 385, 480
BstMWI GCNNNNNNNGC 3 cut(s) 349, 748, 972
BstNI CCWGG 4 cut(s) 148, 201, 914, 1059
BstNSI RCATGY 2 cut(s) 290, 604
BstSCI CCNGG 6 cut(s) 146, 199, 912, 1057, 1137, 1149
BstSFI CTRYAG 1 cut(s) 252
BstV1I GCAGC 1 cut(s) 625
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BsuRI GGCC 3 cut(s) 1095, 1105, 1137
BtgZI GCGATG 1 cut(s) 102
BtsCI GGATG 2 cut(s) 458, 962
BtsIMutI CAGTG 3 cut(s) 528, 544, 661
BveI ACCTGC 2 cut(s) 643, 690
Cac8I GCNNGC 2 cut(s) 424, 1118
CfoI GCGC 1 cut(s) 414
Cfr10I RCCGGY 1 cut(s) 426
Cfr13I GGNCC 1 cut(s) 1135
CseI GACGC 1 cut(s) 318
Csp6I GTAC 2 cut(s) 559, 604
CviAII CATG 4 cut(s) 187, 287, 601, 1113
CviQI GTAC 2 cut(s) 559, 604
DdeI CTNAG 3 cut(s) 401, 621, 876
DpnI GATC 4 cut(s) 60, 323, 387, 482
DpnII GATC 4 cut(s) 58, 321, 385, 480
DraI TTTAAA 1 cut(s) 370
EaeI YGGCCR 2 cut(s) 1093, 1103
Eco130I CCWWGG 1 cut(s) 496
Eco24I GRGCYC 1 cut(s) 42
Eco57I CTGAAG 1 cut(s) 378
EcoRI GAATTC 2 cut(s) 182, 917
EcoRII CCWGG 4 cut(s) 146, 199, 912, 1057
EcoT14I CCWWGG 1 cut(s) 496
EcoT38I GRGCYC 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 496
Esp3I CGTCTC 1 cut(s) 877
FaeI CATG 4 cut(s) 190, 290, 604, 1116
FaqI GGGAC 2 cut(s) 514, 1035
FatI CATG 4 cut(s) 186, 286, 600, 1112
FauI CCCGC 1 cut(s) 831
Fnu4HI GCNGC 2 cut(s) 341, 639
FokI GGATG 2 cut(s) 445, 969
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 2 cut(s) 341, 639
FspBI CTAG 2 cut(s) 497, 1127
GlaI GCGC 1 cut(s) 413
GluI GCNGC 2 cut(s) 341, 639
GsuI CTGGAG 1 cut(s) 1080
HaeIII GGCC 3 cut(s) 1095, 1105, 1137
HapII CCGG 3 cut(s) 427, 1138, 1150
HgaI GACGC 1 cut(s) 318
HhaI GCGC 1 cut(s) 414
Hin1I GRCGYC 1 cut(s) 870
Hin1II CATG 4 cut(s) 190, 290, 604, 1116
Hin6I GCGC 1 cut(s) 412
HinP1I GCGC 1 cut(s) 412
HincII GTYRAC 1 cut(s) 594
HindII GTYRAC 1 cut(s) 594
HindIII AAGCTT 1 cut(s) 1157
HinfI GANTC 5 cut(s) 260, 502, 625, 733, 1130
HpaII CCGG 3 cut(s) 427, 1138, 1150
HphI GGTGA 2 cut(s) 251, 458
Hpy166II GTNNAC 2 cut(s) 594, 1100
Hpy188I TCNGA 3 cut(s) 385, 630, 879
Hpy188III TCNNGA 8 cut(s) 107, 124, 577, 866, 938, 1019, 1044, 1163
Hpy8I GTNNAC 2 cut(s) 594, 1100
HpyAV CCTTC 3 cut(s) 473, 773, 817
HpyCH4III ACNGT 5 cut(s) 532, 591, 757, 1014, 1147
HpyCH4IV ACGT 4 cut(s) 81, 93, 870, 905
HpyCH4V TGCA 6 cut(s) 190, 296, 641, 832, 1003, 1178
HpyF10VI GCNNNNNNNGC 3 cut(s) 349, 748, 972
HpyF3I CTNAG 3 cut(s) 401, 621, 876
HpySE526I ACGT 4 cut(s) 81, 93, 870, 905
Hsp92I GRCGYC 1 cut(s) 870
Hsp92II CATG 4 cut(s) 190, 290, 604, 1116
HspAI GCGC 1 cut(s) 412
Kzo9I GATC 4 cut(s) 58, 321, 385, 480
LmnI GCTCC 3 cut(s) 589, 748, 868
Lsp1109I GCAGC 1 cut(s) 625
LweI GCATC 1 cut(s) 990
MaeI CTAG 2 cut(s) 497, 1127
MaeII ACGT 4 cut(s) 81, 93, 870, 905
MaeIII GTNAC 4 cut(s) 391, 691, 906, 1008
MalI GATC 4 cut(s) 60, 323, 387, 482
MboI GATC 4 cut(s) 58, 321, 385, 480
MboII GAAGA 3 cut(s) 220, 371, 788
MfeI CAATTG 2 cut(s) 743, 967
MflI RGATCY 1 cut(s) 58
MhlI GDGCHC 1 cut(s) 42
MlyI GAGTC 3 cut(s) 269, 496, 1139
MmeI TCCRAC 1 cut(s) 262
MnlI CCTC 7 cut(s) 45, 151, 259, 558, 821, 1051, 1055
MroXI GAANNNNTTC 2 cut(s) 572, 1158
MseI TTAA 7 cut(s) 99, 153, 221, 369, 522, 678, 1035
MspCI CTTAAG 1 cut(s) 220
MspI CCGG 3 cut(s) 427, 1138, 1150
MspR9I CCNGG 6 cut(s) 148, 201, 914, 1059, 1139, 1151
MunI CAATTG 2 cut(s) 743, 967
Mva1269I GAATGC 1 cut(s) 586
MvaI CCWGG 4 cut(s) 148, 201, 914, 1059
MwoI GCNNNNNNNGC 3 cut(s) 349, 748, 972
NciI CCSGG 2 cut(s) 1139, 1151
NdeII GATC 4 cut(s) 58, 321, 385, 480
NlaIII CATG 4 cut(s) 190, 290, 604, 1116
NlaIV GGNNCC 1 cut(s) 569
NmuCI GTSAC 2 cut(s) 391, 1008
NspI RCATGY 2 cut(s) 290, 604
PciI ACATGT 1 cut(s) 600
PctI GAATGC 1 cut(s) 586
PdmI GAANNNNTTC 2 cut(s) 572, 1158
PfeI GAWTC 2 cut(s) 625, 733
PfoI TCCNGGA 3 cut(s) 199, 1057, 1149
PkrI GCNGC 2 cut(s) 342, 640
PleI GAGTC 3 cut(s) 268, 496, 1138
PpsI GAGTC 3 cut(s) 268, 496, 1138
PscI ACATGT 1 cut(s) 600
PshBI ATTAAT 1 cut(s) 153
Psp6I CCWGG 4 cut(s) 146, 199, 912, 1057
PspGI CCWGG 4 cut(s) 146, 199, 912, 1057
PspN4I GGNNCC 1 cut(s) 569
PspPI GGNCC 1 cut(s) 1135
PsuI RGATCY 1 cut(s) 58
RsaI GTAC 2 cut(s) 560, 605
RsaNI GTAC 2 cut(s) 559, 604
SaqAI TTAA 7 cut(s) 99, 153, 221, 369, 522, 678, 1035
SatI GCNGC 2 cut(s) 341, 639
Sau3AI GATC 4 cut(s) 58, 321, 385, 480
Sau96I GGNCC 1 cut(s) 1135
SchI GAGTC 3 cut(s) 269, 496, 1139
ScrFI CCNGG 6 cut(s) 148, 201, 914, 1059, 1139, 1151
SduI GDGCHC 1 cut(s) 42
SfaNI GCATC 1 cut(s) 990
SfcI CTRYAG 1 cut(s) 252
SmlI CTYRAG 4 cut(s) 107, 220, 737, 812
SmoI CTYRAG 4 cut(s) 107, 220, 737, 812
SsiI CCGC 3 cut(s) 341, 398, 824
SspMI CTAG 2 cut(s) 497, 1127
StyD4I CCNGG 6 cut(s) 146, 199, 912, 1057, 1137, 1149
StyI CCWWGG 1 cut(s) 496
TaaI ACNGT 5 cut(s) 532, 591, 757, 1014, 1147
TaiI ACGT 4 cut(s) 84, 96, 873, 908
TaqI TCGA 1 cut(s) 483
TatI WGTACW 1 cut(s) 603
TauI GCSGC 1 cut(s) 343
TfiI GAWTC 2 cut(s) 625, 733
Tru1I TTAA 7 cut(s) 99, 153, 221, 369, 522, 678, 1035
Tru9I TTAA 7 cut(s) 99, 153, 221, 369, 522, 678, 1035
TscAI CASTG 3 cut(s) 535, 551, 661
TseFI GTSAC 2 cut(s) 391, 1008
TseI GCWGC 1 cut(s) 638
Tsp45I GTSAC 2 cut(s) 391, 1008
TspDTI ATGAA 5 cut(s) 20, 175, 195, 903, 945
TspRI CASTG 3 cut(s) 535, 551, 661
Vha464I CTTAAG 1 cut(s) 220
VspI ATTAAT 1 cut(s) 153
XapI RAATTY 6 cut(s) 102, 182, 434, 842, 917, 948
XceI RCATGY 2 cut(s) 290, 604
XmaJI CCTAGG 1 cut(s) 496
XmnI GAANNNNTTC 2 cut(s) 572, 1158
XspI CTAG 2 cut(s) 497, 1127
ZraI GACGTC 1 cut(s) 871
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.