Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0017578

Physical Location & Seq

Genomic Coordinates Reverse (-)

17523786 .. 17528133

Gene Structure 4348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017495

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGAAACGGGGAGGGGAAGGGTGAGGGTGAGCGTGAGGCTGAGGGTGAATGGGGGCGGGAACGGGGCTAGGAATCGGTATCGAAAGCGGGAGAATGGAGAAAGGGAGCTGTTGGAGGTCACAGAGTTTTATACTCCCATGCCACAAGATGTTGGACTTAGCCTTGAGGTTGAAGTAATTGGGGCAGGTGTTTCAAACAATTTTTCTACGACCCCTGTGCTTGATTACCCTTTGATTCATCCTCGTCAGATGATCAGATGTGGCTCATCAGCTGCAGTGGCTGATCTGCAAGAAATGGATACATTCACAGTGCTGACATATAATCTGATGACACATGTTCCTGAAATCTATCAGAATGACTTCCGTACATGGTTTGAGCCGGAGATACTGAAATTTGGATATGCAGGAATATTCAAGAAGAGATCTAATCCTAATTTGAAGGATGGATGTGGGACCTTTTATTTGAATAACCGATTTCGAAACCTAAATACATATGAGATTGAATTTGACACACTGGCAGATGAGGTTGCAAAGAAATTTGGGACTCCACAAGAGACGGAGGAAGTTAAAATCCATCTTTCAACGTCAGATTTTCAACTGATATACTTTGTTTTGCAGGGGAATATAGCCGTGTGTGTCCTTCTAGAAAAAATTGATGGCTCTAATGGAAAACTTTGTGTGGCAAATACTCATATCTGCCCAATGTCTCATCAAAGAGGAGCATCCCTCTTTCAGATTGTCATTTATGTACATGAGGTAGAAAAGTATGCTGCCGATCCTAAGGTTCCTTTTATACTATGTGGAGATTTCAATGCTGATCCTGAAAGTTTAGTCTCATGCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000932 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005984 GO:0005985 GO:0005986 GO:0006073 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009311 GO:0009312 GO:0009987 GO:0010467 GO:0016051 GO:0016070 GO:0016071 GO:0019252 GO:0032991 GO:0033692 GO:0034637 GO:0034641 GO:0034645 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046351 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Exo_endo_phos zf-C6H2

Protein Analysis

282

Amino Acids

31.7

Weight (kDa)

5.6

Isoelectric Point (pI)

34.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017578)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16490
rosa_chinensis	RchiOBHm_Chr2g0106371 RchiOBHm_Chr2g0106391
rosa_laevigata	RLG00000017493 RLG00000017495
rosa_roxburghii	Rroxscaffold_2G00137230
rosa_rugosa	Rorug02G0135100
rosa_samantha	Rh2AG186200 Rh2AG186300 Rh2CG191200 Rh2DG192300 Rh2DG192400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	176
Acc36I	ACCTGC	1 cut(s)	176
AciI	CCGC	2 cut(s)	57, 88
AclWI	GGATC	2 cut(s)	770, 812
AcsI	RAATTY	3 cut(s)	392, 503, 536
AfaI	GTAC	2 cut(s)	367, 750
AflIII	ACRYGT	1 cut(s)	334
AgsI	TTSAA	9 cut(s)	173, 195, 415, 439, 466, 503, 582, 596, 811
AluBI	AGCT	2 cut(s)	109, 272
AluI	AGCT	2 cut(s)	109, 272
Alw26I	GTCTC	3 cut(s)	548, 711, 838
AlwI	GGATC	2 cut(s)	770, 812
AlwNI	CAGNNNCTG	1 cut(s)	281
ApeKI	GCWGC	2 cut(s)	272, 770
ApoI	RAATTY	3 cut(s)	392, 503, 536
ArsI	GACNNNNNNTTYG	2 cut(s)	445, 477
Asp700I	GAANNNNTTC	1 cut(s)	359
AspS9I	GGNCC	1 cut(s)	453
AsuHPI	GGTGA	3 cut(s)	34, 40, 58
AsuII	TTCGAA	1 cut(s)	478
AvaII	GGWCC	1 cut(s)	453
AxyI	CCTNAGG	1 cut(s)	780
BbvCI	CCTCAGC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	259, 757
BccI	CCATC	3 cut(s)	437, 582, 650
BceAI	ACGGC	1 cut(s)	614
BcgI	CGANNNNNNTGC	2 cut(s)	199, 233
BciVI	GTATCC	1 cut(s)	292
BclI	TGATCA	1 cut(s)	252
BcoDI	GTCTC	3 cut(s)	548, 711, 838
BfaI	CTAG	2 cut(s)	69, 644
BfmI	CTRYAG	1 cut(s)	273
BfuAI	ACCTGC	1 cut(s)	176
BfuI	GTATCC	1 cut(s)	292
BglII	AGATCT	1 cut(s)	422
BisI	GCNGC	2 cut(s)	273, 771
BlsI	GCNGC	2 cut(s)	274, 772
Bme18I	GGWCC	1 cut(s)	453
BmgT120I	GGNCC	1 cut(s)	453
BmiI	GGNNCC	2 cut(s)	454, 786
BmsI	GCATC	1 cut(s)	731
BplI	GAGNNNNNCTC	2 cut(s)	711, 743
Bpu10I	CCTNAGC	1 cut(s)	41
Bpu14I	TTCGAA	1 cut(s)	478
BpuEI	CTTGAG	1 cut(s)	185
Bse1I	ACTGG	1 cut(s)	519
Bse21I	CCTNAGG	1 cut(s)	780
BseGI	GGATG	4 cut(s)	238, 448, 452, 722
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	519
BseRI	GAGGAG	1 cut(s)	732
BseXI	GCAGC	2 cut(s)	259, 757
BsiSI	CCGG	1 cut(s)	380
BslFI	GGGAC	2 cut(s)	466, 556
BsmAI	GTCTC	3 cut(s)	548, 711, 838
BsmBI	CGTCTC	1 cut(s)	548
BsmFI	GGGAC	2 cut(s)	466, 556
Bsp119I	TTCGAA	1 cut(s)	478
Bsp1407I	TGTACA	1 cut(s)	748
Bsp143I	GATC	5 cut(s)	252, 283, 422, 775, 817
BspACI	CCGC	2 cut(s)	57, 88
BspCNI	CTCAG	1 cut(s)	33
BspLI	GGNNCC	2 cut(s)	454, 786
BspMAI	CTGCAG	1 cut(s)	277
BspMI	ACCTGC	1 cut(s)	176
BspPI	GGATC	2 cut(s)	770, 812
BspT104I	TTCGAA	1 cut(s)	478
BsrGI	TGTACA	1 cut(s)	748
BsrI	ACTGG	1 cut(s)	519
BssMI	GATC	5 cut(s)	252, 283, 422, 775, 817
Bst4CI	ACNGT	1 cut(s)	310
Bst6I	CTCTTC	1 cut(s)	413
BstAUI	TGTACA	1 cut(s)	748
BstBI	TTCGAA	1 cut(s)	478
BstDEI	CTNAG	3 cut(s)	41, 158, 780
BstF5I	GGATG	4 cut(s)	238, 448, 452, 722
BstKTI	GATC	5 cut(s)	255, 286, 425, 778, 820
BstMAI	GTCTC	3 cut(s)	548, 711, 838
BstMBI	GATC	5 cut(s)	252, 283, 422, 775, 817
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNSI	RCATGY	1 cut(s)	338
BstSFI	CTRYAG	1 cut(s)	273
BstV1I	GCAGC	2 cut(s)	259, 757
BstX2I	RGATCY	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	422
Bsu36I	CCTNAGG	1 cut(s)	780
BsuI	GTATCC	1 cut(s)	292
BtsCI	GGATG	4 cut(s)	238, 448, 452, 722
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	3 cut(s)	282, 315, 512
BveI	ACCTGC	1 cut(s)	176
CaiI	CAGNNNCTG	1 cut(s)	281
Cfr13I	GGNCC	1 cut(s)	453
Csp6I	GTAC	2 cut(s)	366, 749
CviAII	CATG	5 cut(s)	139, 335, 369, 752, 837
CviQI	GTAC	2 cut(s)	366, 749
DdeI	CTNAG	3 cut(s)	41, 158, 780
DpnI	GATC	5 cut(s)	254, 285, 424, 777, 819
DpnII	GATC	5 cut(s)	252, 283, 422, 775, 817
Eam1104I	CTCTTC	1 cut(s)	413
EarI	CTCTTC	1 cut(s)	413
Eco47I	GGWCC	1 cut(s)	453
Eco81I	CCTNAGG	1 cut(s)	780
EcoO109I	RGGNCCY	1 cut(s)	453
Esp3I	CGTCTC	1 cut(s)	548
FaeI	CATG	5 cut(s)	142, 338, 372, 755, 840
FaqI	GGGAC	2 cut(s)	466, 556
FatI	CATG	5 cut(s)	138, 334, 368, 751, 836
FauI	CCCGC	2 cut(s)	50, 81
FauNDI	CATATG	1 cut(s)	493
FbaI	TGATCA	1 cut(s)	252
Fnu4HI	GCNGC	2 cut(s)	273, 771
FokI	GGATG	4 cut(s)	225, 455, 459, 709
Fsp4HI	GCNGC	2 cut(s)	273, 771
FspBI	CTAG	2 cut(s)	69, 644
GluI	GCNGC	2 cut(s)	273, 771
HapII	CCGG	1 cut(s)	380
Hin1II	CATG	5 cut(s)	142, 338, 372, 755, 840
HinfI	GANTC	3 cut(s)	73, 235, 544
HpaII	CCGG	1 cut(s)	380
HphI	GGTGA	3 cut(s)	34, 40, 58
Hpy188I	TCNGA	6 cut(s)	249, 257, 327, 354, 589, 735
Hpy188III	TCNNGA	4 cut(s)	341, 415, 644, 821
HpyAV	CCTTC	3 cut(s)	12, 433, 650
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4IV	ACGT	1 cut(s)	584
HpyCH4V	TGCA	6 cut(s)	275, 289, 404, 530, 616, 840
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	3 cut(s)	41, 158, 780
HpySE526I	ACGT	1 cut(s)	584
Hsp92II	CATG	5 cut(s)	142, 338, 372, 755, 840
Ksp22I	TGATCA	1 cut(s)	252
Kzo9I	GATC	5 cut(s)	252, 283, 422, 775, 817
LmnI	GCTCC	2 cut(s)	106, 719
LpnPI	CCDG	8 cut(s)	171, 228, 354, 390, 393, 500, 602, 834
Lsp1109I	GCAGC	2 cut(s)	259, 757
LweI	GCATC	1 cut(s)	731
MaeI	CTAG	2 cut(s)	69, 644
MaeII	ACGT	1 cut(s)	584
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	5 cut(s)	254, 285, 424, 777, 819
MboI	GATC	5 cut(s)	252, 283, 422, 775, 817
MboII	GAAGA	1 cut(s)	430
MflI	RGATCY	1 cut(s)	422
MluCI	AATT	7 cut(s)	177, 199, 392, 433, 503, 536, 651
MlyI	GAGTC	1 cut(s)	538
MmeI	TCCRAC	2 cut(s)	93, 133
MroXI	GAANNNNTTC	1 cut(s)	359
MseI	TTAA	2 cut(s)	567, 844
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	1 cut(s)	380
MwoI	GCNNNNNNNGC	1 cut(s)	278
NdeI	CATATG	1 cut(s)	493
NdeII	GATC	5 cut(s)	252, 283, 422, 775, 817
NlaIII	CATG	5 cut(s)	142, 338, 372, 755, 840
NlaIV	GGNNCC	2 cut(s)	454, 786
NmuCI	GTSAC	1 cut(s)	118
NspI	RCATGY	1 cut(s)	338
NspV	TTCGAA	1 cut(s)	478
PaqCI	CACCTGC	1 cut(s)	176
PciI	ACATGT	1 cut(s)	334
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	2 cut(s)	73, 235
PkrI	GCNGC	2 cut(s)	274, 772
PleI	GAGTC	1 cut(s)	538
PpsI	GAGTC	1 cut(s)	538
PpuMI	RGGWCCY	1 cut(s)	453
PscI	ACATGT	1 cut(s)	334
Psp5II	RGGWCCY	1 cut(s)	453
PspN4I	GGNNCC	2 cut(s)	454, 786
PspPI	GGNCC	1 cut(s)	453
PspPPI	RGGWCCY	1 cut(s)	453
PstI	CTGCAG	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	422
PvuII	CAGCTG	1 cut(s)	272
RsaI	GTAC	2 cut(s)	367, 750
RsaNI	GTAC	2 cut(s)	366, 749
SaqAI	TTAA	2 cut(s)	567, 844
SatI	GCNGC	2 cut(s)	273, 771
Sau3AI	GATC	5 cut(s)	252, 283, 422, 775, 817
Sau96I	GGNCC	1 cut(s)	453
SchI	GAGTC	1 cut(s)	538
SfaNI	GCATC	1 cut(s)	731
SfcI	CTRYAG	1 cut(s)	273
SfuI	TTCGAA	1 cut(s)	478
SinI	GGWCC	1 cut(s)	453
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	7 cut(s)	177, 199, 392, 433, 503, 536, 651
SsiI	CCGC	2 cut(s)	57, 88
SspI	AATATT	1 cut(s)	411
SspMI	CTAG	2 cut(s)	69, 644
TaaI	ACNGT	1 cut(s)	310
TaiI	ACGT	1 cut(s)	587
TaqI	TCGA	2 cut(s)	82, 478
TasI	AATT	7 cut(s)	177, 199, 392, 433, 503, 536, 651
TatI	WGTACW	1 cut(s)	748
TfiI	GAWTC	2 cut(s)	73, 235
Tru1I	TTAA	2 cut(s)	567, 844
Tru9I	TTAA	2 cut(s)	567, 844
TscAI	CASTG	3 cut(s)	282, 315, 519
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	2 cut(s)	272, 770
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	1 cut(s)	227
TspGWI	ACGGA	2 cut(s)	353, 572
TspRI	CASTG	3 cut(s)	282, 315, 519
VpaK11BI	GGWCC	1 cut(s)	453
XapI	RAATTY	3 cut(s)	392, 503, 536
XbaI	TCTAGA	1 cut(s)	643
XceI	RCATGY	1 cut(s)	338
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	2 cut(s)	69, 644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.