FvH4_1g16740

Microtubule-associated protein RP EB family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0015182
Physical Location & Seq
Reverse (-)
9687850 .. 9690860
3011 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g16740.t2

Sequence Viewer

Length: 1017 bp
ATGGCGACCAATATCGGCATGATGGACGGCGCTTACTTCGTCGGCAGATCTGAGATCTTGGCCTGGATCAACTCCACTCTCCAACTCCATCTCAACAAAGTCGAGGAGGCTTGTTCCGGAGCGGTGCACTGCCAGCTGATGGACGCGGCTCATCCGGGGATTGTTCCGATGCACAAGGTCAATTTCGACGCCAAGAACGAGTATGAGATGATCCAGAATTACAAGGTTCTTCAAGATGTGTTCAACAAACTCAAAATCACCAAGCATATTGAGGTGAGCAAGCTTGTGAAAGGAAGACCGCTGGATAATTTGGAGTTCATGCAGTGGATGAAGCGGTACTGTGATTCTATCAATGGCTGCACCAACTACAATGCTCTGGAGAGGAGAGAAGCTTGCAAGGGTGGTAAAGAAGCAAGCAAGAGAGCTGCCCAATCACAATCATCTGCCAAGGGTACAACAGCTTCCCAAAGAGCTCATTCCTCGCACAATGCTAATGCTAGAAGAAATGATGTACCACCTTCTGGGAACTCCACAAATCATGCAGTAAAGGCCTCGAGACCTTCTTCTAGTGGAGGTCCTTCTCCTCCTGCATATGCTGAAGAGATCACGGAGTTGAAGCTATCTGTGGATAGCCTTGAGAAGGAGAGGGATTTCTACTTTGGAAAGCTCAGAGATATCGAGATACTATGCCAGACTCCTGAAATTCAACACCTATCTGTTGTTGGTGCTATACAGAAGATTCTGTATGCTACAGATGATGATGCAACAGTGGTGGCACAAGCTCAAGCCATGTTGTCTGCCCCCTCAAAGGAAGCAGATCCCTCCAGTCCCATTGCTGAGCCATTGAGTCCTATTGCAGAGGTTTCAGATGAGAAAGCAAGTTCGGAGAATCAGAAGAGGAAAACCATAAACAACTTTGATGTGGATGCTGCTGCCATGGCAACATTATCTCCGAGGCAAAGGGTCTCTGATGCTTCTGATGTCCATTGTAGTGGGTCACCTCTGATGACCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000079 GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0006355 GO:0006996 GO:0007010 GO:0008017 GO:0008022 GO:0008092 GO:0008104 GO:0008150 GO:0009524 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0015630 GO:0015631 GO:0016043 GO:0019219 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0030312 GO:0030496 GO:0030865 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0033036 GO:0033674 GO:0042325 GO:0042327 GO:0042802 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043549 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0048471 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0071840 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CH EB1

Protein Analysis

339

Amino Acids

36.9

Weight (kDa)

6.38

Isoelectric Point (pI)

59.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EB1 PF03271 166 - 190 1.1e-12 EB1-like C-terminal motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015182)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67270
fragaria_vesca FvH4_1g16740
malus_domestica MD02G1178500.v1.1 MD15G1288400.v1.1
prunus_persica Prupe.6G229300_v2.0.a1
pyrus_communis pycom02g14460
rosa_chinensis RchiOBHm_Chr2g0106641
rosa_laevigata RLG00000017525
rosa_multiflora Rmu_sc0006221.1_g000003
rosa_roxburghii Rroxscaffold_2G00136930
rosa_rugosa Rorug02G0137000
rosa_samantha Rh2AG188400 Rh2BG199400 Rh2CG193400 Rh2DG194600
rosa_wichuraiana Rw2G014790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 139, 521
AccBSI CCGCTC 1 cut(s) 122
AccII CGCG 1 cut(s) 146
AccIII TCCGGA 1 cut(s) 116
AciI CCGC 4 cut(s) 122, 146, 299, 334
AclWI GGATC 3 cut(s) 74, 205, 812
AcsI RAATTY 1 cut(s) 702
AcuI CTGAAG 1 cut(s) 618
AcyI GRCGYC 1 cut(s) 189
AfaI GTAC 3 cut(s) 338, 454, 513
AfiI CCNNNNNNNGG 4 cut(s) 139, 521, 640, 808
AgsI TTSAA 4 cut(s) 233, 244, 616, 707
AjnI CCWGG 1 cut(s) 62
AluBI AGCT 9 cut(s) 136, 283, 392, 425, 461, 473, 619, 667, 782
AluI AGCT 9 cut(s) 136, 283, 392, 425, 461, 473, 619, 667, 782
Alw21I GWGCWC 2 cut(s) 129, 475
Alw26I GTCTC 2 cut(s) 550, 970
Alw44I GTGCAC 1 cut(s) 125
AlwI GGATC 3 cut(s) 74, 205, 812
Ama87I CYCGRG 1 cut(s) 553
Aor13HI TCCGGA 1 cut(s) 116
AoxI GGCC 2 cut(s) 60, 549
ApaLI GTGCAC 1 cut(s) 125
ApeKI GCWGC 4 cut(s) 357, 425, 929, 932
ApoI RAATTY 1 cut(s) 702
AspLEI GCGC 1 cut(s) 32
AspS9I GGNCC 1 cut(s) 575
AsuC2I CCSGG 1 cut(s) 156
AsuHPI GGTGA 3 cut(s) 250, 286, 990
AvaI CYCGRG 1 cut(s) 553
AvaII GGWCC 1 cut(s) 575
BaeGI GKGCMC 1 cut(s) 129
BanII GRGCYC 1 cut(s) 475
BarI GAAGNNNNNNTAC 2 cut(s) 445, 477
BbsI GAAGAC 1 cut(s) 301
Bbv12I GWGCWC 2 cut(s) 129, 475
BbvI GCAGC 4 cut(s) 344, 412, 916, 919
BccI CCATC 3 cut(s) 16, 96, 133
BceAI ACGGC 1 cut(s) 43
BciT130I CCWGG 1 cut(s) 64
BcnI CCSGG 1 cut(s) 156
BcoDI GTCTC 2 cut(s) 550, 970
BfaI CTAG 2 cut(s) 498, 567
BfmI CTRYAG 1 cut(s) 750
BfoI RGCGCY 1 cut(s) 33
BglII AGATCT 2 cut(s) 47, 54
BisI GCNGC 5 cut(s) 147, 358, 426, 930, 933
BlpI GCTNAGC 1 cut(s) 837
BlsI GCNGC 5 cut(s) 148, 359, 427, 931, 934
Bme1390I CCNGG 2 cut(s) 64, 156
Bme18I GGWCC 1 cut(s) 575
BmeT110I CYCGRG 1 cut(s) 553
BmgT120I GGNCC 1 cut(s) 575
BmrFI CCNGG 2 cut(s) 64, 156
BmsI GCATC 4 cut(s) 159, 751, 916, 961
BpiI GAAGAC 1 cut(s) 301
BpmI CTGGAG 2 cut(s) 398, 808
Bpu1102I GCTNAGC 1 cut(s) 837
BpuEI CTTGAG 2 cut(s) 656, 768
BpuMI CCSGG 1 cut(s) 156
BsaHI GRCGYC 1 cut(s) 189
BsaI GGTCTC 2 cut(s) 550, 970
BsaJI CCNNGG 4 cut(s) 155, 447, 936, 953
BsaWI WCCGGW 1 cut(s) 116
BsaXI ACNNNNNCTCC 2 cut(s) 934, 964
Bsc4I CCNNNNNNNGG 4 cut(s) 139, 521, 640, 808
Bse1I ACTGG 1 cut(s) 825
Bse3DI GCAATG 1 cut(s) 831
BseAI TCCGGA 1 cut(s) 116
BseBI CCWGG 1 cut(s) 64
BseDI CCNNGG 4 cut(s) 155, 447, 936, 953
BseGI GGATG 3 cut(s) 151, 333, 931
BseLI CCNNNNNNNGG 4 cut(s) 139, 521, 640, 808
BseMI GCAATG 1 cut(s) 831
BseMII CTCAG 3 cut(s) 42, 682, 828
BseNI ACTGG 1 cut(s) 825
BseRI GAGGAG 3 cut(s) 119, 397, 573
BseSI GKGCMC 1 cut(s) 129
BseXI GCAGC 4 cut(s) 344, 412, 916, 919
BsgI GTGCAG 1 cut(s) 343
Bsh1236I CGCG 1 cut(s) 146
BshFI GGCC 2 cut(s) 62, 551
BsiHKAI GWGCWC 2 cut(s) 129, 475
BsiHKCI CYCGRG 1 cut(s) 553
BsiSI CCGG 2 cut(s) 117, 155
BslFI GGGAC 1 cut(s) 813
BslI CCNNNNNNNGG 4 cut(s) 139, 521, 640, 808
BsmAI GTCTC 2 cut(s) 550, 970
BsmFI GGGAC 1 cut(s) 813
BsnI GGCC 2 cut(s) 62, 551
Bso31I GGTCTC 2 cut(s) 550, 970
BsoBI CYCGRG 1 cut(s) 553
Bsp1286I GDGCHC 2 cut(s) 129, 475
Bsp13I TCCGGA 1 cut(s) 116
Bsp143I GATC 6 cut(s) 47, 54, 66, 210, 603, 817
Bsp1720I GCTNAGC 1 cut(s) 837
Bsp19I CCATGG 1 cut(s) 936
BspACI CCGC 4 cut(s) 122, 146, 299, 334
BspANI GGCC 2 cut(s) 62, 551
BspCNI CTCAG 3 cut(s) 43, 681, 829
BspEI TCCGGA 1 cut(s) 116
BspFNI CGCG 1 cut(s) 146
BspPI GGATC 3 cut(s) 74, 205, 812
BspTNI GGTCTC 2 cut(s) 550, 970
BsrBI CCGCTC 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 831
BsrI ACTGG 1 cut(s) 825
BssECI CCNNGG 4 cut(s) 155, 447, 936, 953
BssMI GATC 6 cut(s) 47, 54, 66, 210, 603, 817
BssNI GRCGYC 1 cut(s) 189
BssT1I CCWWGG 2 cut(s) 447, 936
Bst2UI CCWGG 1 cut(s) 64
Bst4CI ACNGT 2 cut(s) 341, 769
Bst6I CTCTTC 2 cut(s) 594, 890
BstACI GRCGYC 1 cut(s) 189
BstC8I GCNNGC 4 cut(s) 134, 281, 394, 415
BstDEI CTNAG 3 cut(s) 51, 668, 837
BstDSI CCRYGG 1 cut(s) 936
BstEII GGTNACC 1 cut(s) 996
BstENI CCTNNNNNAGG 1 cut(s) 638
BstF5I GGATG 3 cut(s) 151, 333, 931
BstFNI CGCG 1 cut(s) 146
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 6 cut(s) 50, 57, 69, 213, 606, 820
BstMAI GTCTC 2 cut(s) 550, 970
BstMBI GATC 6 cut(s) 47, 54, 66, 210, 603, 817
BstMWI GCNNNNNNNGC 3 cut(s) 133, 548, 938
BstNI CCWGG 1 cut(s) 64
BstPI GGTNACC 1 cut(s) 996
BstSCI CCNGG 2 cut(s) 62, 154
BstSFI CTRYAG 1 cut(s) 750
BstSLI GKGCMC 1 cut(s) 129
BstUI CGCG 1 cut(s) 146
BstV1I GCAGC 4 cut(s) 344, 412, 916, 919
BstV2I GAAGAC 1 cut(s) 301
BstX2I RGATCY 3 cut(s) 47, 54, 817
BstXI CCANNNNNNTGG 1 cut(s) 992
BstYI RGATCY 3 cut(s) 47, 54, 817
BsuRI GGCC 2 cut(s) 62, 551
BtgI CCRYGG 1 cut(s) 936
BtsCI GGATG 3 cut(s) 151, 333, 931
BtsI GCAGTG 2 cut(s) 127, 329
BtsIMutI CAGTG 3 cut(s) 127, 329, 774
Cac8I GCNNGC 4 cut(s) 134, 281, 394, 415
CfoI GCGC 1 cut(s) 32
Cfr13I GGNCC 1 cut(s) 575
CseI GACGC 2 cut(s) 152, 197
Csp6I GTAC 3 cut(s) 337, 453, 512
CspCI CAANNNNNGTGG 2 cut(s) 753, 788
CviAII CATG 5 cut(s) 19, 319, 539, 790, 937
CviQI GTAC 3 cut(s) 337, 453, 512
DdeI CTNAG 3 cut(s) 51, 668, 837
DpnI GATC 6 cut(s) 49, 56, 68, 212, 605, 819
DpnII GATC 6 cut(s) 47, 54, 66, 210, 603, 817
Eam1104I CTCTTC 2 cut(s) 594, 890
EarI CTCTTC 2 cut(s) 594, 890
Ecl136II GAGCTC 1 cut(s) 473
Eco130I CCWWGG 2 cut(s) 447, 936
Eco147I AGGCCT 1 cut(s) 551
Eco24I GRGCYC 1 cut(s) 475
Eco31I GGTCTC 2 cut(s) 550, 970
Eco32I GATATC 1 cut(s) 676
Eco47I GGWCC 1 cut(s) 575
Eco53kI GAGCTC 1 cut(s) 473
Eco57I CTGAAG 1 cut(s) 618
Eco88I CYCGRG 1 cut(s) 553
Eco91I GGTNACC 1 cut(s) 996
EcoICRI GAGCTC 1 cut(s) 473
EcoNI CCTNNNNNAGG 1 cut(s) 638
EcoO109I RGGNCCY 1 cut(s) 575
EcoO65I GGTNACC 1 cut(s) 996
EcoRII CCWGG 1 cut(s) 62
EcoRV GATATC 1 cut(s) 676
EcoT14I CCWWGG 2 cut(s) 447, 936
EcoT38I GRGCYC 1 cut(s) 475
ErhI CCWWGG 2 cut(s) 447, 936
FaeI CATG 5 cut(s) 22, 322, 542, 793, 940
FaqI GGGAC 1 cut(s) 813
FatI CATG 5 cut(s) 18, 318, 538, 789, 936
FauNDI CATATG 1 cut(s) 592
Fnu4HI GCNGC 5 cut(s) 147, 358, 426, 930, 933
FokI GGATG 3 cut(s) 138, 340, 938
FriOI GRGCYC 1 cut(s) 475
Fsp4HI GCNGC 5 cut(s) 147, 358, 426, 930, 933
FspBI CTAG 2 cut(s) 498, 567
GlaI GCGC 1 cut(s) 31
GluI GCNGC 5 cut(s) 147, 358, 426, 930, 933
GsuI CTGGAG 2 cut(s) 398, 808
HaeII RGCGCY 1 cut(s) 33
HaeIII GGCC 2 cut(s) 62, 551
HapII CCGG 2 cut(s) 117, 155
HgaI GACGC 2 cut(s) 152, 197
HhaI GCGC 1 cut(s) 32
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 5 cut(s) 22, 322, 542, 793, 940
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HindIII AAGCTT 2 cut(s) 281, 390
HinfI GANTC 5 cut(s) 344, 694, 739, 847, 889
HpaII CCGG 2 cut(s) 117, 155
HphI GGTGA 3 cut(s) 250, 286, 990
Hpy166II GTNNAC 1 cut(s) 127
Hpy188III TCNNGA 7 cut(s) 117, 214, 233, 377, 555, 679, 698
Hpy8I GTNNAC 1 cut(s) 127
Hpy99I CGWCG 2 cut(s) 44, 191
HpyAV CCTTC 4 cut(s) 528, 570, 588, 634
HpyCH4III ACNGT 2 cut(s) 341, 769
HpyCH4V TGCA 9 cut(s) 127, 172, 322, 360, 396, 542, 590, 764, 857
HpyF10VI GCNNNNNNNGC 3 cut(s) 133, 548, 938
HpyF3I CTNAG 3 cut(s) 51, 668, 837
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 5 cut(s) 22, 322, 542, 793, 940
HspAI GCGC 1 cut(s) 30
Kpn2I TCCGGA 1 cut(s) 116
Kzo9I GATC 6 cut(s) 47, 54, 66, 210, 603, 817
LmnI GCTCC 1 cut(s) 119
Lsp1109I GCAGC 4 cut(s) 344, 412, 916, 919
LweI GCATC 4 cut(s) 159, 751, 916, 961
MaeI CTAG 2 cut(s) 498, 567
MaeIII GTNAC 1 cut(s) 996
MalI GATC 6 cut(s) 49, 56, 68, 212, 605, 819
MbiI CCGCTC 1 cut(s) 122
MboI GATC 6 cut(s) 47, 54, 66, 210, 603, 817
MboII GAAGA 7 cut(s) 221, 306, 513, 555, 611, 748, 907
MflI RGATCY 3 cut(s) 47, 54, 817
MhlI GDGCHC 2 cut(s) 129, 475
MluCI AATT 4 cut(s) 181, 217, 307, 702
MlyI GAGTC 2 cut(s) 688, 856
MmeI TCCRAC 1 cut(s) 106
MroI TCCGGA 1 cut(s) 116
MslI CAYNNNNRTG 1 cut(s) 990
MspA1I CMGCKG 2 cut(s) 136, 301
MspI CCGG 2 cut(s) 117, 155
MspR9I CCNGG 2 cut(s) 64, 156
MvaI CCWGG 1 cut(s) 64
MvnI CGCG 1 cut(s) 146
MwoI GCNNNNNNNGC 3 cut(s) 133, 548, 938
NciI CCSGG 1 cut(s) 156
NcoI CCATGG 1 cut(s) 936
NdeI CATATG 1 cut(s) 592
NdeII GATC 6 cut(s) 47, 54, 66, 210, 603, 817
NlaIII CATG 5 cut(s) 22, 322, 542, 793, 940
NmuCI GTSAC 1 cut(s) 996
PaeR7I CTCGAG 1 cut(s) 553
PceI AGGCCT 1 cut(s) 551
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PfeI GAWTC 3 cut(s) 344, 739, 889
PflMI CCANNNNNTGG 2 cut(s) 139, 521
PkrI GCNGC 5 cut(s) 148, 359, 427, 931, 934
PleI GAGTC 2 cut(s) 688, 855
PpsI GAGTC 2 cut(s) 688, 855
PpuMI RGGWCCY 1 cut(s) 575
Psp124BI GAGCTC 1 cut(s) 475
Psp5II RGGWCCY 1 cut(s) 575
Psp6I CCWGG 1 cut(s) 62
PspEI GGTNACC 1 cut(s) 996
PspGI CCWGG 1 cut(s) 62
PspPI GGNCC 1 cut(s) 575
PspPPI RGGWCCY 1 cut(s) 575
PsuI RGATCY 3 cut(s) 47, 54, 817
PvuII CAGCTG 1 cut(s) 136
RsaI GTAC 3 cut(s) 338, 454, 513
RsaNI GTAC 3 cut(s) 337, 453, 512
RseI CAYNNNNRTG 1 cut(s) 990
SacI GAGCTC 1 cut(s) 475
SatI GCNGC 5 cut(s) 147, 358, 426, 930, 933
Sau3AI GATC 6 cut(s) 47, 54, 66, 210, 603, 817
Sau96I GGNCC 1 cut(s) 575
SchI GAGTC 2 cut(s) 688, 856
ScrFI CCNGG 2 cut(s) 64, 156
SduI GDGCHC 2 cut(s) 129, 475
SfaNI GCATC 4 cut(s) 159, 751, 916, 961
SfcI CTRYAG 1 cut(s) 750
Sfr274I CTCGAG 1 cut(s) 553
SinI GGWCC 1 cut(s) 575
SlaI CTCGAG 1 cut(s) 553
SmiMI CAYNNNNRTG 1 cut(s) 990
SmlI CTYRAG 3 cut(s) 553, 635, 783
SmoI CTYRAG 3 cut(s) 553, 635, 783
Sse9I AATT 4 cut(s) 181, 217, 307, 702
SseBI AGGCCT 1 cut(s) 551
SsiI CCGC 4 cut(s) 122, 146, 299, 334
SspMI CTAG 2 cut(s) 498, 567
SstI GAGCTC 1 cut(s) 475
StuI AGGCCT 1 cut(s) 551
StyD4I CCNGG 2 cut(s) 62, 154
StyI CCWWGG 2 cut(s) 447, 936
TaaI ACNGT 2 cut(s) 341, 769
TaqI TCGA 4 cut(s) 102, 186, 554, 678
TasI AATT 4 cut(s) 181, 217, 307, 702
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 3 cut(s) 344, 739, 889
TscAI CASTG 3 cut(s) 134, 329, 774
TseFI GTSAC 1 cut(s) 996
TseI GCWGC 4 cut(s) 357, 425, 929, 932
Tsp45I GTSAC 1 cut(s) 996
TspDTI ATGAA 2 cut(s) 307, 344
TspGWI ACGGA 1 cut(s) 623
TspRI CASTG 3 cut(s) 134, 329, 774
Van91I CCANNNNNTGG 2 cut(s) 139, 521
VneI GTGCAC 1 cut(s) 125
VpaK11BI GGWCC 1 cut(s) 575
XagI CCTNNNNNAGG 1 cut(s) 638
XapI RAATTY 1 cut(s) 702
XhoI CTCGAG 1 cut(s) 553
XspI CTAG 2 cut(s) 498, 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.