MD02G1178500.v1.1

Microtubule-associated protein RP EB family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0015182
Physical Location & Seq
Reverse (-)
15776822 .. 15779086
2265 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1178500.v1.1.491

Sequence Viewer

Length: 1017 bp
ATGGCGACGAATATTGGTATGATGGACGGTGCTTACTTCGTAGGTAGGACAGAGATCTTGGCCTGGATCAACTCCACTCTCCATCTCAATCTCAGCAAAGTCGAAGAGGCGTGTTCCGGTGCCGTTCACTGCCAGCTCATGGATGCCGTTCATAATGGTATTGTGCCGATGCACAAGGTAAATTTTGATGCCAAGAGTGAGTACGAGATGATTCAGAACTACAAGGTCCTTCAGGACGTTTTCAACAAACTCAAAATAACCAAGTACATTGAGGTGAGCAAGCTCGTGAAAGGAAGGCCGCTTGATAATTTGGAGTTTATGCAGTGGATGAAACGATACTGCGATTCTGTCAATGGAGGCTGTATGAGCAATTACAATGCTCTGGAAAGAAGAGAAGCTTGCAAAGGAGGGAAAGAAGCTTGCAAGGTTGGGAAAGAAGGAAATAAGAGAGGTGCCCAATTGCAATCATCAGCTAAGGGTGCAGCAGCTACCCAAAGATCTCAGTCCACCCACACTGCTCGAAGAAATGATGTAGCACCTTCGGTGAACCCCACAAGTCAATCAGGGAAGACCTCGAGGCCTTCTTCTAGTGGAGGCCCTACTCCCCCTGCATATGATGAACAGATCACGGAGTTGAAGCTGTCGGTGGATAGCCTTGAGAAGGAGCGGGATTTCTACTTTGCAAAGCTCAGGGATATTGAGATACTTTGCCAGAGTCCTGAGATTGAGCACCTAACTGTTGTTGCTGCTGTACAGAAAATTCTATATGCAACTGAAGATAATGCATCGGTGGTGGCAGAAGCTCAAGCCATGCTGTCTGGCCCCACAAAGGAAGCGGAGCCTTTGAGTCCAATCGCTGAAGCTTCAGACGAGAAGGCAAGTTCAGAGACACAAAAGAGGAAAACTTATCTGAATCTCGACGTTGACGCTGCTGCCATGACGACATTATCTCCAAAACAAAGGATCTCCGACGCTTCTGATGTCCATTGTAGTGGGTCACCCCTTATGACTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000079 GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0006355 GO:0006996 GO:0007010 GO:0008017 GO:0008022 GO:0008092 GO:0008104 GO:0008150 GO:0009524 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0015630 GO:0015631 GO:0016043 GO:0019219 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0030312 GO:0030496 GO:0030865 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0033036 GO:0033674 GO:0042325 GO:0042327 GO:0042802 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043549 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0048471 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0071840 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CH EB1

Protein Analysis

339

Amino Acids

37.04

Weight (kDa)

6.41

Isoelectric Point (pI)

59.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CH PF00307 17 - 108 2.1e-09 Calponin homology (CH) domain
EB1 PF03271 219 - 257 8.9e-17 EB1-like C-terminal motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015182)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67270
fragaria_vesca FvH4_1g16740
malus_domestica MD02G1178500.v1.1 MD15G1288400.v1.1
prunus_persica Prupe.6G229300_v2.0.a1
pyrus_communis pycom02g14460
rosa_chinensis RchiOBHm_Chr2g0106641
rosa_laevigata RLG00000017525
rosa_multiflora Rmu_sc0006221.1_g000003
rosa_roxburghii Rroxscaffold_2G00136930
rosa_rugosa Rorug02G0137000
rosa_samantha Rh2AG188400 Rh2BG199400 Rh2CG193400 Rh2DG194600
rosa_wichuraiana Rw2G014790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 574
AccB1I GGYRCC 2 cut(s) 119, 452
AccB7I CCANNNNNTGG 1 cut(s) 139
AccBSI CCGCTC 1 cut(s) 667
AciI CCGC 3 cut(s) 299, 667, 836
AclWI GGATC 2 cut(s) 74, 971
AcsI RAATTY 2 cut(s) 181, 759
AcuI CTGAAG 4 cut(s) 215, 795, 849, 879
AfaI GTAC 3 cut(s) 203, 266, 753
AfiI CCNNNNNNNGG 3 cut(s) 139, 661, 829
AgsI TTSAA 2 cut(s) 244, 637
AjnI CCWGG 1 cut(s) 62
Alw21I GWGCWC 1 cut(s) 732
Alw26I GTCTC 1 cut(s) 881
AlwI GGATC 2 cut(s) 74, 971
Ama87I CYCGRG 1 cut(s) 574
AoxI GGCC 5 cut(s) 60, 296, 578, 595, 820
ApeKI GCWGC 5 cut(s) 482, 485, 746, 929, 932
ApoI RAATTY 2 cut(s) 181, 759
AspS9I GGNCC 3 cut(s) 226, 596, 821
AsuHPI GGTGA 3 cut(s) 286, 556, 990
AvaI CYCGRG 1 cut(s) 574
AvaII GGWCC 1 cut(s) 226
BaeGI GKGCMC 1 cut(s) 457
BanI GGYRCC 2 cut(s) 119, 452
BauI CACGAG 1 cut(s) 284
BbsI GAAGAC 1 cut(s) 575
Bbv12I GWGCWC 1 cut(s) 732
BbvI GCAGC 5 cut(s) 494, 497, 733, 916, 919
BccI CCATC 2 cut(s) 16, 90
BceAI ACGGC 2 cut(s) 107, 131
BciT130I CCWGG 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 881
BfaI CTAG 1 cut(s) 588
BglII AGATCT 2 cut(s) 54, 497
BisI GCNGC 6 cut(s) 299, 483, 486, 747, 930, 933
BlsI GCNGC 6 cut(s) 300, 484, 487, 748, 931, 934
Bme1390I CCNGG 1 cut(s) 64
Bme18I GGWCC 1 cut(s) 226
BmeT110I CYCGRG 1 cut(s) 574
BmgT120I GGNCC 3 cut(s) 226, 596, 821
BmiI GGNNCC 4 cut(s) 121, 454, 823, 840
BmrFI CCNGG 1 cut(s) 64
BmsI GCATC 4 cut(s) 133, 159, 178, 794
BpiI GAAGAC 1 cut(s) 575
Bpu10I CCTNAGC 2 cut(s) 474, 689
BpuEI CTTGAG 2 cut(s) 677, 789
BsaWI WCCGGW 1 cut(s) 116
BsaXI ACNNNNNCTCC 2 cut(s) 934, 964
Bsc4I CCNNNNNNNGG 3 cut(s) 139, 661, 829
BseBI CCWGG 1 cut(s) 64
BseGI GGATG 2 cut(s) 148, 333
BseLI CCNNNNNNNGG 3 cut(s) 139, 661, 829
BseMII CTCAG 4 cut(s) 106, 515, 703, 711
BseSI GKGCMC 1 cut(s) 457
BseXI GCAGC 5 cut(s) 494, 497, 733, 916, 919
BsgI GTGCAG 1 cut(s) 501
BshFI GGCC 5 cut(s) 62, 298, 580, 597, 822
BshNI GGYRCC 2 cut(s) 119, 452
BsiHKAI GWGCWC 1 cut(s) 732
BsiHKCI CYCGRG 1 cut(s) 574
BsiSI CCGG 1 cut(s) 117
BslI CCNNNNNNNGG 3 cut(s) 139, 661, 829
BsmAI GTCTC 1 cut(s) 881
BsnI GGCC 5 cut(s) 62, 298, 580, 597, 822
BsoBI CYCGRG 1 cut(s) 574
Bsp1286I GDGCHC 2 cut(s) 457, 732
Bsp1407I TGTACA 1 cut(s) 751
Bsp143I GATC 5 cut(s) 54, 66, 497, 624, 963
BspACI CCGC 3 cut(s) 299, 667, 836
BspANI GGCC 5 cut(s) 62, 298, 580, 597, 822
BspCNI CTCAG 4 cut(s) 105, 514, 702, 712
BspLI GGNNCC 4 cut(s) 121, 454, 823, 840
BspPI GGATC 2 cut(s) 74, 971
BspT107I GGYRCC 2 cut(s) 119, 452
BsrBI CCGCTC 1 cut(s) 667
BsrGI TGTACA 1 cut(s) 751
BssMI GATC 5 cut(s) 54, 66, 497, 624, 963
BssSI CACGAG 1 cut(s) 284
Bst2BI CACGAG 1 cut(s) 284
Bst2UI CCWGG 1 cut(s) 64
Bst4CI ACNGT 2 cut(s) 29, 739
Bst6I CTCTTC 2 cut(s) 99, 385
BstAUI TGTACA 1 cut(s) 751
BstC8I GCNNGC 4 cut(s) 134, 281, 400, 421
BstDEI CTNAG 5 cut(s) 92, 474, 501, 689, 720
BstEII GGTNACC 1 cut(s) 996
BstENI CCTNNNNNAGG 1 cut(s) 659
BstF5I GGATG 2 cut(s) 148, 333
BstKTI GATC 5 cut(s) 57, 69, 500, 627, 966
BstMAI GTCTC 1 cut(s) 881
BstMBI GATC 5 cut(s) 54, 66, 497, 624, 963
BstMWI GCNNNNNNNGC 2 cut(s) 366, 479
BstNI CCWGG 1 cut(s) 64
BstPI GGTNACC 1 cut(s) 996
BstSCI CCNGG 1 cut(s) 62
BstSLI GKGCMC 1 cut(s) 457
BstV1I GCAGC 5 cut(s) 494, 497, 733, 916, 919
BstV2I GAAGAC 1 cut(s) 575
BstX2I RGATCY 3 cut(s) 54, 497, 963
BstXI CCANNNNNNTGG 1 cut(s) 992
BstYI RGATCY 3 cut(s) 54, 497, 963
BsuRI GGCC 5 cut(s) 62, 298, 580, 597, 822
BtsCI GGATG 2 cut(s) 148, 333
BtsI GCAGTG 3 cut(s) 127, 329, 513
BtsIMutI CAGTG 3 cut(s) 127, 329, 513
Cac8I GCNNGC 4 cut(s) 134, 281, 400, 421
Cfr13I GGNCC 3 cut(s) 226, 596, 821
CseI GACGC 2 cut(s) 935, 980
Csp6I GTAC 3 cut(s) 202, 265, 752
CviAII CATG 3 cut(s) 139, 811, 937
CviQI GTAC 3 cut(s) 202, 265, 752
DdeI CTNAG 5 cut(s) 92, 474, 501, 689, 720
DpnI GATC 5 cut(s) 56, 68, 499, 626, 965
DpnII GATC 5 cut(s) 54, 66, 497, 624, 963
Eam1104I CTCTTC 2 cut(s) 99, 385
EarI CTCTTC 2 cut(s) 99, 385
Eco147I AGGCCT 1 cut(s) 580
Eco47I GGWCC 1 cut(s) 226
Eco57I CTGAAG 4 cut(s) 215, 795, 849, 879
Eco88I CYCGRG 1 cut(s) 574
Eco91I GGTNACC 1 cut(s) 996
EcoNI CCTNNNNNAGG 1 cut(s) 659
EcoO109I RGGNCCY 2 cut(s) 226, 596
EcoO65I GGTNACC 1 cut(s) 996
EcoRII CCWGG 1 cut(s) 62
EcoT22I ATGCAT 1 cut(s) 787
FaeI CATG 3 cut(s) 142, 814, 940
FalI AAGNNNNNCTT 2 cut(s) 382, 414
FatI CATG 3 cut(s) 138, 810, 936
FauI CCCGC 1 cut(s) 660
FauNDI CATATG 1 cut(s) 613
Fnu4HI GCNGC 6 cut(s) 299, 483, 486, 747, 930, 933
FokI GGATG 2 cut(s) 155, 340
Fsp4HI GCNGC 6 cut(s) 299, 483, 486, 747, 930, 933
FspBI CTAG 1 cut(s) 588
GluI GCNGC 6 cut(s) 299, 483, 486, 747, 930, 933
HaeIII GGCC 5 cut(s) 62, 298, 580, 597, 822
HapII CCGG 1 cut(s) 117
HgaI GACGC 2 cut(s) 935, 980
Hin1II CATG 3 cut(s) 142, 814, 940
HincII GTYRAC 1 cut(s) 925
HindII GTYRAC 1 cut(s) 925
HindIII AAGCTT 3 cut(s) 396, 417, 861
HinfI GANTC 5 cut(s) 211, 344, 715, 847, 913
HpaII CCGG 1 cut(s) 117
HphI GGTGA 3 cut(s) 286, 556, 990
Hpy166II GTNNAC 4 cut(s) 127, 507, 547, 925
Hpy188I TCNGA 6 cut(s) 216, 868, 886, 912, 970, 979
Hpy188III TCNNGA 5 cut(s) 233, 286, 383, 719, 917
Hpy8I GTNNAC 4 cut(s) 127, 507, 547, 925
Hpy99I CGWCG 3 cut(s) 10, 923, 974
HpyAV CCTTC 7 cut(s) 239, 288, 431, 549, 591, 655, 868
HpyCH4III ACNGT 2 cut(s) 29, 739
HpyCH4IV ACGT 2 cut(s) 237, 921
HpyF10VI GCNNNNNNNGC 2 cut(s) 366, 479
HpyF3I CTNAG 5 cut(s) 92, 474, 501, 689, 720
HpySE526I ACGT 2 cut(s) 237, 921
Hsp92II CATG 3 cut(s) 142, 814, 940
Kzo9I GATC 5 cut(s) 54, 66, 497, 624, 963
LmnI GCTCC 2 cut(s) 664, 838
Lsp1109I GCAGC 5 cut(s) 494, 497, 733, 916, 919
LweI GCATC 4 cut(s) 133, 159, 178, 794
MaeI CTAG 1 cut(s) 588
MaeII ACGT 2 cut(s) 237, 921
MaeIII GTNAC 1 cut(s) 996
MalI GATC 5 cut(s) 56, 68, 499, 626, 965
MbiI CCGCTC 1 cut(s) 667
MboI GATC 5 cut(s) 54, 66, 497, 624, 963
MboII GAAGA 6 cut(s) 116, 402, 534, 576, 580, 788
MfeI CAATTG 1 cut(s) 458
MflI RGATCY 3 cut(s) 54, 497, 963
MhlI GDGCHC 2 cut(s) 457, 732
MluCI AATT 5 cut(s) 181, 307, 370, 458, 759
MlyI GAGTC 2 cut(s) 724, 856
MmeI TCCRAC 1 cut(s) 993
MnlI CCTC 9 cut(s) 100, 265, 350, 401, 443, 570, 583, 587, 891
Mph1103I ATGCAT 1 cut(s) 787
MslI CAYNNNNRTG 2 cut(s) 272, 990
MspI CCGG 1 cut(s) 117
MspR9I CCNGG 1 cut(s) 64
MunI CAATTG 1 cut(s) 458
MvaI CCWGG 1 cut(s) 64
MwoI GCNNNNNNNGC 2 cut(s) 366, 479
NdeI CATATG 1 cut(s) 613
NdeII GATC 5 cut(s) 54, 66, 497, 624, 963
NlaIII CATG 3 cut(s) 142, 814, 940
NlaIV GGNNCC 4 cut(s) 121, 454, 823, 840
NmuCI GTSAC 1 cut(s) 996
NsiI ATGCAT 1 cut(s) 787
PaeR7I CTCGAG 1 cut(s) 574
PceI AGGCCT 1 cut(s) 580
PfeI GAWTC 3 cut(s) 211, 344, 913
PflMI CCANNNNNTGG 1 cut(s) 139
PkrI GCNGC 6 cut(s) 300, 484, 487, 748, 931, 934
PleI GAGTC 2 cut(s) 723, 855
PpsI GAGTC 2 cut(s) 723, 855
PpuMI RGGWCCY 1 cut(s) 226
Psp5II RGGWCCY 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 62
PspEI GGTNACC 1 cut(s) 996
PspGI CCWGG 1 cut(s) 62
PspN4I GGNNCC 4 cut(s) 121, 454, 823, 840
PspPI GGNCC 3 cut(s) 226, 596, 821
PspPPI RGGWCCY 1 cut(s) 226
PspXI VCTCGAGB 1 cut(s) 574
PsuI RGATCY 3 cut(s) 54, 497, 963
RsaI GTAC 3 cut(s) 203, 266, 753
RsaNI GTAC 3 cut(s) 202, 265, 752
RseI CAYNNNNRTG 2 cut(s) 272, 990
SatI GCNGC 6 cut(s) 299, 483, 486, 747, 930, 933
Sau3AI GATC 5 cut(s) 54, 66, 497, 624, 963
Sau96I GGNCC 3 cut(s) 226, 596, 821
SchI GAGTC 2 cut(s) 724, 856
ScrFI CCNGG 1 cut(s) 64
SduI GDGCHC 2 cut(s) 457, 732
SfaNI GCATC 4 cut(s) 133, 159, 178, 794
Sfr274I CTCGAG 1 cut(s) 574
SinI GGWCC 1 cut(s) 226
SlaI CTCGAG 1 cut(s) 574
SmiMI CAYNNNNRTG 2 cut(s) 272, 990
SmlI CTYRAG 3 cut(s) 574, 656, 804
SmoI CTYRAG 3 cut(s) 574, 656, 804
Sse9I AATT 5 cut(s) 181, 307, 370, 458, 759
SseBI AGGCCT 1 cut(s) 580
SsiI CCGC 3 cut(s) 299, 667, 836
SspI AATATT 1 cut(s) 13
SspMI CTAG 1 cut(s) 588
StuI AGGCCT 1 cut(s) 580
StyD4I CCNGG 1 cut(s) 62
TaaI ACNGT 2 cut(s) 29, 739
TaiI ACGT 2 cut(s) 240, 924
TaqI TCGA 4 cut(s) 102, 520, 575, 918
TasI AATT 5 cut(s) 181, 307, 370, 458, 759
TatI WGTACW 2 cut(s) 264, 751
TauI GCSGC 1 cut(s) 301
TfiI GAWTC 3 cut(s) 211, 344, 913
TscAI CASTG 3 cut(s) 134, 329, 520
TseFI GTSAC 1 cut(s) 996
TseI GCWGC 5 cut(s) 482, 485, 746, 929, 932
Tsp45I GTSAC 1 cut(s) 996
TspDTI ATGAA 3 cut(s) 140, 344, 633
TspGWI ACGGA 1 cut(s) 644
TspRI CASTG 3 cut(s) 134, 329, 520
Van91I CCANNNNNTGG 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 226
XagI CCTNNNNNAGG 1 cut(s) 659
XapI RAATTY 2 cut(s) 181, 759
XhoI CTCGAG 1 cut(s) 574
XspI CTAG 1 cut(s) 588
Zsp2I ATGCAT 1 cut(s) 787
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.