Rh2AG188400

Microtubule-associated protein RP EB family member

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
18514236 .. 18516640
2405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG188400.1

Sequence Viewer

Length: 1002 bp
ATGGCGACGAATATCGGCATGATGGACGGCGCGTACTTCGTCGGCAGATCTGAGATCTTGGCCTGGATCAACTCCACTCTCCAACTCCATCTCAACAAAGTCGAAGAGGCGTGTTCCGGCGCGGTCCACTGCCAGCTCATGGACGCGGCTCATCCGGGGATGGTTCCGATGCACAAGGTCAATTTTGACGCCAAGAGCGAGTATGAGATGATCCAGAACTATAAGGTTCTTCAAGATGTCTTCAACAAACTCAAAATTACCAAGCATATTGAGGTAAGCAAGCTTGTGAAAGGAAGGCCGCTCGACAATTTGGAGTTCATGCAATGGATGAAGCGCTACTGTGATTCTATCAATGGCTGCACCAGCTACAATGCTCTGGAGAGGAGAGAAGCTTGCAAGGGCGGTAAAGAAGTAAGCAAGAGAGCTGCCCAATCACAATCATCCGCTAAGGGTACAGCAACTTCCCAAAGAGCTCATTCCTCTCACAATGCTAGAAGAAATGATGTACCCCATTCTGGGAATCAATCAGTAAAGGCCTCAAGACCTTCTTCTAGTGGAGGCCCTGCCCCACCTGCATATGATGAAAAGATCACGGAGTTGAAGCTATCAGTGGATAGCCTAGAGAAGGAGAGAGATTTCTACTTTGCAAAGCTCAGAGATATTGAGATACTATGCCAGACTCCTGAAATTGAACACCTATCTGTTGTTGCTGCTATACAGAAGATTTTATATGCTACAGATGATGATGCAACAGTGGTGGCACAAGCGCAAGCCATGTTGTCTGGCCCCTCAAAGGAAGCAGAGCCCTCGAGCCCCATTGCTGAGCCATTGAGTCCCATTGCTGAGGCTTCAGATGAGAAAGCAAGTTCGGAGACCCAGAAGAGGAAAACCATAAACAACTTTGATGTCGATGCTGCTGCCATGGCAACATTATCTCCAAGGCAAAGGGTCTCTGATGCTTCTGATGTCCATTGTAGTGGGTCACCTCTGATGACTTGCTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

333

Amino Acids

36.46

Weight (kDa)

6.38

Isoelectric Point (pI)

61.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CH PF00307 16 - 108 4.2e-10 Calponin homology (CH) domain
EB1 PF03271 207 - 245 2.2e-17 EB1-like C-terminal motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015182)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67270
fragaria_vesca FvH4_1g16740
malus_domestica MD02G1178500.v1.1 MD15G1288400.v1.1
prunus_persica Prupe.6G229300_v2.0.a1
pyrus_communis pycom02g14460
rosa_chinensis RchiOBHm_Chr2g0106641
rosa_laevigata RLG00000017525
rosa_multiflora Rmu_sc0006221.1_g000003
rosa_roxburghii Rroxscaffold_2G00136930
rosa_rugosa Rorug02G0137000
rosa_samantha Rh2AG188400 Rh2BG199400 Rh2CG193400 Rh2DG194600
rosa_wichuraiana Rw2G014790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 580
Acc36I ACCTGC 1 cut(s) 580
AccB7I CCANNNNNTGG 1 cut(s) 139
AccBSI CCGCTC 1 cut(s) 301
AccII CGCG 3 cut(s) 32, 122, 146
AciI CCGC 5 cut(s) 122, 146, 299, 402, 444
AclWI GGATC 2 cut(s) 74, 205
AcuI CTGAAG 1 cut(s) 834
AcyI GRCGYC 1 cut(s) 189
AfaI GTAC 3 cut(s) 35, 454, 507
AfeI AGCGCT 1 cut(s) 335
AfiI CCNNNNNNNGG 6 cut(s) 139, 515, 516, 625, 793, 882
AgsI TTSAA 4 cut(s) 233, 244, 601, 692
AjnI CCWGG 1 cut(s) 62
AluBI AGCT 8 cut(s) 136, 283, 366, 392, 425, 473, 604, 652
AluI AGCT 8 cut(s) 136, 283, 366, 392, 425, 473, 604, 652
Alw21I GWGCWC 1 cut(s) 475
Alw26I GTCTC 2 cut(s) 866, 955
AlwI GGATC 2 cut(s) 74, 205
Ama87I CYCGRG 1 cut(s) 808
Aor51HI AGCGCT 1 cut(s) 335
AoxI GGCC 5 cut(s) 60, 296, 534, 559, 784
ApeKI GCWGC 5 cut(s) 357, 425, 710, 914, 917
AspLEI GCGC 4 cut(s) 32, 122, 336, 769
AspS9I GGNCC 3 cut(s) 124, 560, 785
AsuC2I CCSGG 1 cut(s) 156
AsuHPI GGTGA 1 cut(s) 975
AvaI CYCGRG 1 cut(s) 808
AvaII GGWCC 1 cut(s) 124
BanII GRGCYC 3 cut(s) 475, 807, 815
BarI GAAGNNNNNNTAC 2 cut(s) 445, 477
BbsI GAAGAC 1 cut(s) 232
Bbv12I GWGCWC 1 cut(s) 475
BbvCI CCTCAGC 1 cut(s) 843
BbvI GCAGC 5 cut(s) 344, 412, 697, 901, 904
BccI CCATC 3 cut(s) 16, 96, 154
BceAI ACGGC 1 cut(s) 43
BcgI CGANNNNNNTGC 4 cut(s) 789, 823, 899, 933
BciT130I CCWGG 1 cut(s) 64
BcnI CCSGG 1 cut(s) 156
BcoDI GTCTC 2 cut(s) 866, 955
BfaI CTAG 3 cut(s) 492, 552, 620
BfmI CTRYAG 1 cut(s) 735
BfoI RGCGCY 1 cut(s) 337
BfuAI ACCTGC 1 cut(s) 580
BglII AGATCT 2 cut(s) 47, 54
BisI GCNGC 7 cut(s) 147, 299, 358, 426, 711, 915, 918
BlpI GCTNAGC 1 cut(s) 822
BlsI GCNGC 7 cut(s) 148, 300, 359, 427, 712, 916, 919
Bme1390I CCNGG 2 cut(s) 64, 156
Bme18I GGWCC 1 cut(s) 124
BmeT110I CYCGRG 1 cut(s) 808
BmgT120I GGNCC 3 cut(s) 124, 560, 785
BmiI GGNNCC 2 cut(s) 165, 787
BmrFI CCNGG 2 cut(s) 64, 156
BmsI GCATC 4 cut(s) 159, 736, 901, 946
BpiI GAAGAC 1 cut(s) 232
BpmI CTGGAG 1 cut(s) 398
Bpu10I CCTNAGC 2 cut(s) 447, 843
Bpu1102I GCTNAGC 1 cut(s) 822
BpuEI CTTGAG 1 cut(s) 523
BpuMI CCSGG 1 cut(s) 156
BsaHI GRCGYC 1 cut(s) 189
BsaI GGTCTC 2 cut(s) 866, 955
BsaJI CCNNGG 3 cut(s) 155, 921, 938
BsaXI ACNNNNNCTCC 2 cut(s) 919, 949
Bsc4I CCNNNNNNNGG 6 cut(s) 139, 515, 516, 625, 793, 882
Bse3DI GCAATG 3 cut(s) 329, 816, 837
BseBI CCWGG 1 cut(s) 64
BseDI CCNNGG 3 cut(s) 155, 921, 938
BseGI GGATG 4 cut(s) 151, 165, 333, 440
BseLI CCNNNNNNNGG 6 cut(s) 139, 515, 516, 625, 793, 882
BseMI GCAATG 3 cut(s) 329, 816, 837
BseMII CTCAG 4 cut(s) 42, 667, 813, 834
BseRI GAGGAG 1 cut(s) 397
BseXI GCAGC 5 cut(s) 344, 412, 697, 901, 904
BsgI GTGCAG 1 cut(s) 343
Bsh1236I CGCG 3 cut(s) 32, 122, 146
BshFI GGCC 5 cut(s) 62, 298, 536, 561, 786
BsiHKAI GWGCWC 1 cut(s) 475
BsiHKCI CYCGRG 1 cut(s) 808
BsiSI CCGG 2 cut(s) 117, 155
BslFI GGGAC 1 cut(s) 819
BslI CCNNNNNNNGG 6 cut(s) 139, 515, 516, 625, 793, 882
BsmAI GTCTC 2 cut(s) 866, 955
BsmFI GGGAC 1 cut(s) 819
BsnI GGCC 5 cut(s) 62, 298, 536, 561, 786
Bso31I GGTCTC 2 cut(s) 866, 955
BsoBI CYCGRG 1 cut(s) 808
Bsp1286I GDGCHC 3 cut(s) 475, 807, 815
Bsp143I GATC 5 cut(s) 47, 54, 66, 210, 588
Bsp1720I GCTNAGC 1 cut(s) 822
Bsp19I CCATGG 1 cut(s) 921
BspACI CCGC 5 cut(s) 122, 146, 299, 402, 444
BspANI GGCC 5 cut(s) 62, 298, 536, 561, 786
BspCNI CTCAG 4 cut(s) 43, 666, 814, 835
BspFNI CGCG 3 cut(s) 32, 122, 146
BspLI GGNNCC 2 cut(s) 165, 787
BspMI ACCTGC 1 cut(s) 580
BspPI GGATC 2 cut(s) 74, 205
BspTNI GGTCTC 2 cut(s) 866, 955
BsrBI CCGCTC 1 cut(s) 301
BsrDI GCAATG 3 cut(s) 329, 816, 837
BssECI CCNNGG 3 cut(s) 155, 921, 938
BssMI GATC 5 cut(s) 47, 54, 66, 210, 588
BssNI GRCGYC 1 cut(s) 189
BssT1I CCWWGG 2 cut(s) 921, 938
Bst2UI CCWGG 1 cut(s) 64
Bst4CI ACNGT 2 cut(s) 341, 754
Bst6I CTCTTC 2 cut(s) 99, 875
BstACI GRCGYC 1 cut(s) 189
BstC8I GCNNGC 4 cut(s) 134, 281, 394, 771
BstDEI CTNAG 5 cut(s) 51, 447, 653, 822, 843
BstDSI CCRYGG 1 cut(s) 921
BstEII GGTNACC 1 cut(s) 981
BstENI CCTNNNNNAGG 1 cut(s) 623
BstF5I GGATG 4 cut(s) 151, 165, 333, 440
BstFNI CGCG 3 cut(s) 32, 122, 146
BstH2I RGCGCY 1 cut(s) 337
BstHHI GCGC 4 cut(s) 32, 122, 336, 769
BstKTI GATC 5 cut(s) 50, 57, 69, 213, 591
BstMAI GTCTC 2 cut(s) 866, 955
BstMBI GATC 5 cut(s) 47, 54, 66, 210, 588
BstMWI GCNNNNNNNGC 3 cut(s) 363, 572, 923
BstNI CCWGG 1 cut(s) 64
BstPI GGTNACC 1 cut(s) 981
BstSCI CCNGG 2 cut(s) 62, 154
BstSFI CTRYAG 1 cut(s) 735
BstUI CGCG 3 cut(s) 32, 122, 146
BstV1I GCAGC 5 cut(s) 344, 412, 697, 901, 904
BstV2I GAAGAC 1 cut(s) 232
BstX2I RGATCY 2 cut(s) 47, 54
BstXI CCANNNNNNTGG 1 cut(s) 977
BstYI RGATCY 2 cut(s) 47, 54
BsuRI GGCC 5 cut(s) 62, 298, 536, 561, 786
BtgI CCRYGG 1 cut(s) 921
BtsCI GGATG 4 cut(s) 151, 165, 333, 440
BtsI GCAGTG 1 cut(s) 127
BtsIMutI CAGTG 3 cut(s) 127, 615, 759
BveI ACCTGC 1 cut(s) 580
Cac8I GCNNGC 4 cut(s) 134, 281, 394, 771
CfoI GCGC 4 cut(s) 32, 122, 336, 769
Cfr13I GGNCC 3 cut(s) 124, 560, 785
CseI GACGC 2 cut(s) 152, 197
Csp6I GTAC 3 cut(s) 34, 453, 506
CspCI CAANNNNNGTGG 2 cut(s) 738, 773
CviAII CATG 5 cut(s) 19, 139, 319, 775, 922
CviQI GTAC 3 cut(s) 34, 453, 506
DdeI CTNAG 5 cut(s) 51, 447, 653, 822, 843
DpnI GATC 5 cut(s) 49, 56, 68, 212, 590
DpnII GATC 5 cut(s) 47, 54, 66, 210, 588
Eam1104I CTCTTC 2 cut(s) 99, 875
EarI CTCTTC 2 cut(s) 99, 875
Ecl136II GAGCTC 1 cut(s) 473
Eco130I CCWWGG 2 cut(s) 921, 938
Eco147I AGGCCT 1 cut(s) 536
Eco24I GRGCYC 3 cut(s) 475, 807, 815
Eco31I GGTCTC 2 cut(s) 866, 955
Eco47I GGWCC 1 cut(s) 124
Eco47III AGCGCT 1 cut(s) 335
Eco53kI GAGCTC 1 cut(s) 473
Eco57I CTGAAG 1 cut(s) 834
Eco88I CYCGRG 1 cut(s) 808
Eco91I GGTNACC 1 cut(s) 981
EcoICRI GAGCTC 1 cut(s) 473
EcoNI CCTNNNNNAGG 1 cut(s) 623
EcoO109I RGGNCCY 1 cut(s) 560
EcoO65I GGTNACC 1 cut(s) 981
EcoRII CCWGG 1 cut(s) 62
EcoT14I CCWWGG 2 cut(s) 921, 938
EcoT38I GRGCYC 3 cut(s) 475, 807, 815
ErhI CCWWGG 2 cut(s) 921, 938
FaeI CATG 5 cut(s) 22, 142, 322, 778, 925
FalI AAGNNNNNCTT 2 cut(s) 532, 564
FaqI GGGAC 1 cut(s) 819
FatI CATG 5 cut(s) 18, 138, 318, 774, 921
FauNDI CATATG 1 cut(s) 577
Fnu4HI GCNGC 7 cut(s) 147, 299, 358, 426, 711, 915, 918
FokI GGATG 4 cut(s) 138, 172, 340, 427
FriOI GRGCYC 3 cut(s) 475, 807, 815
Fsp4HI GCNGC 7 cut(s) 147, 299, 358, 426, 711, 915, 918
FspBI CTAG 3 cut(s) 492, 552, 620
GlaI GCGC 4 cut(s) 31, 121, 335, 768
GluI GCNGC 7 cut(s) 147, 299, 358, 426, 711, 915, 918
GsuI CTGGAG 1 cut(s) 398
HaeII RGCGCY 1 cut(s) 337
HaeIII GGCC 5 cut(s) 62, 298, 536, 561, 786
HapII CCGG 2 cut(s) 117, 155
HgaI GACGC 2 cut(s) 152, 197
HhaI GCGC 4 cut(s) 32, 122, 336, 769
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 5 cut(s) 22, 142, 322, 778, 925
Hin6I GCGC 4 cut(s) 30, 120, 334, 767
HinP1I GCGC 4 cut(s) 30, 120, 334, 767
HindIII AAGCTT 2 cut(s) 281, 390
HinfI GANTC 4 cut(s) 344, 520, 679, 832
HpaII CCGG 2 cut(s) 117, 155
HphI GGTGA 1 cut(s) 975
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 8 cut(s) 52, 168, 656, 853, 871, 955, 964, 990
Hpy188III TCNNGA 5 cut(s) 214, 233, 377, 540, 683
Hpy8I GTNNAC 1 cut(s) 127
Hpy99I CGWCG 2 cut(s) 10, 44
HpyAV CCTTC 3 cut(s) 288, 555, 619
HpyCH4III ACNGT 2 cut(s) 341, 754
HpyCH4V TGCA 7 cut(s) 172, 322, 360, 396, 575, 647, 749
HpyF10VI GCNNNNNNNGC 3 cut(s) 363, 572, 923
HpyF3I CTNAG 5 cut(s) 51, 447, 653, 822, 843
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 5 cut(s) 22, 142, 322, 778, 925
HspAI GCGC 4 cut(s) 30, 120, 334, 767
Kzo9I GATC 5 cut(s) 47, 54, 66, 210, 588
Lsp1109I GCAGC 5 cut(s) 344, 412, 697, 901, 904
LweI GCATC 4 cut(s) 159, 736, 901, 946
MaeI CTAG 3 cut(s) 492, 552, 620
MaeIII GTNAC 1 cut(s) 981
MalI GATC 5 cut(s) 49, 56, 68, 212, 590
MbiI CCGCTC 1 cut(s) 301
MboI GATC 5 cut(s) 47, 54, 66, 210, 588
MboII GAAGA 7 cut(s) 116, 221, 232, 507, 540, 733, 892
MflI RGATCY 2 cut(s) 47, 54
MhlI GDGCHC 3 cut(s) 475, 807, 815
MluCI AATT 4 cut(s) 181, 255, 307, 687
MlyI GAGTC 2 cut(s) 673, 841
MmeI TCCRAC 1 cut(s) 106
MslI CAYNNNNRTG 1 cut(s) 975
MspI CCGG 2 cut(s) 117, 155
MspR9I CCNGG 2 cut(s) 64, 156
MvaI CCWGG 1 cut(s) 64
MvnI CGCG 3 cut(s) 32, 122, 146
MwoI GCNNNNNNNGC 3 cut(s) 363, 572, 923
NciI CCSGG 1 cut(s) 156
NcoI CCATGG 1 cut(s) 921
NdeI CATATG 1 cut(s) 577
NdeII GATC 5 cut(s) 47, 54, 66, 210, 588
NlaIII CATG 5 cut(s) 22, 142, 322, 778, 925
NlaIV GGNNCC 2 cut(s) 165, 787
NmuCI GTSAC 1 cut(s) 981
PaeR7I CTCGAG 1 cut(s) 808
PaqCI CACCTGC 1 cut(s) 580
PceI AGGCCT 1 cut(s) 536
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PfeI GAWTC 2 cut(s) 344, 520
PflMI CCANNNNNTGG 1 cut(s) 139
PkrI GCNGC 7 cut(s) 148, 300, 359, 427, 712, 916, 919
PleI GAGTC 2 cut(s) 673, 840
PpsI GAGTC 2 cut(s) 673, 840
Psp124BI GAGCTC 1 cut(s) 475
Psp6I CCWGG 1 cut(s) 62
PspEI GGTNACC 1 cut(s) 981
PspGI CCWGG 1 cut(s) 62
PspN4I GGNNCC 2 cut(s) 165, 787
PspPI GGNCC 3 cut(s) 124, 560, 785
PspXI VCTCGAGB 1 cut(s) 808
PsuI RGATCY 2 cut(s) 47, 54
RsaI GTAC 3 cut(s) 35, 454, 507
RsaNI GTAC 3 cut(s) 34, 453, 506
RseI CAYNNNNRTG 1 cut(s) 975
SacI GAGCTC 1 cut(s) 475
SatI GCNGC 7 cut(s) 147, 299, 358, 426, 711, 915, 918
Sau3AI GATC 5 cut(s) 47, 54, 66, 210, 588
Sau96I GGNCC 3 cut(s) 124, 560, 785
SchI GAGTC 2 cut(s) 673, 841
ScrFI CCNGG 2 cut(s) 64, 156
SduI GDGCHC 3 cut(s) 475, 807, 815
SfaNI GCATC 4 cut(s) 159, 736, 901, 946
SfcI CTRYAG 1 cut(s) 735
Sfr274I CTCGAG 1 cut(s) 808
SinI GGWCC 1 cut(s) 124
SlaI CTCGAG 1 cut(s) 808
SmiMI CAYNNNNRTG 1 cut(s) 975
SmlI CTYRAG 2 cut(s) 538, 808
SmoI CTYRAG 2 cut(s) 538, 808
Sse9I AATT 4 cut(s) 181, 255, 307, 687
SseBI AGGCCT 1 cut(s) 536
SsiI CCGC 5 cut(s) 122, 146, 299, 402, 444
SspMI CTAG 3 cut(s) 492, 552, 620
SstI GAGCTC 1 cut(s) 475
StuI AGGCCT 1 cut(s) 536
StyD4I CCNGG 2 cut(s) 62, 154
StyI CCWWGG 2 cut(s) 921, 938
TaaI ACNGT 2 cut(s) 341, 754
TaqI TCGA 4 cut(s) 102, 303, 809, 909
TasI AATT 4 cut(s) 181, 255, 307, 687
TauI GCSGC 2 cut(s) 149, 301
TfiI GAWTC 2 cut(s) 344, 520
TscAI CASTG 3 cut(s) 134, 615, 759
TseFI GTSAC 1 cut(s) 981
TseI GCWGC 5 cut(s) 357, 425, 710, 914, 917
Tsp45I GTSAC 1 cut(s) 981
TspDTI ATGAA 3 cut(s) 307, 344, 597
TspGWI ACGGA 1 cut(s) 608
TspRI CASTG 3 cut(s) 134, 615, 759
Van91I CCANNNNNTGG 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 124
XagI CCTNNNNNAGG 1 cut(s) 623
XhoI CTCGAG 1 cut(s) 808
XspI CTAG 3 cut(s) 492, 552, 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.