Rmu_sc0006221.1_g000003

Microtubule-associated protein RP EB family member

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006221.1
Physical Location & Seq
Forward (+)
11315 .. 13718
2404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006221.1_g000003.1.cds

Sequence Viewer

Length: 984 bp
atgatggacggcgcgtacttcgtcggcagatctgagatcttggcctggatcaactccactctccaactccatctcaacaaagtcgaagaggcatgttccggcgcggtccactgccagctgatggacgcggctcatccggggatggttccgatgcacaaggtcaattttgacgccaaaagcgagtatgagatgatccagaactataaggttcttcaagatgtcttcaacaaactcaaaattaccaagcatattgaggtaagcaagcttgtgaaaggaaggcctctcgacaatttggagttcatgcaatggatgaagcgctactgtgattctatcaatggctgcaccagctacaatgctctggagaggagagaagcttgcaagggtggtaaagaagtaagcaagagagctgcccaatcacaatcatccgctaagggtacagcaacttcccaaagagctcattcctctcacaatgctagaagaaatgatgtaccccattctgggaatcaatcagtaaaggcctcaagaccttcttctagtggaggccctgccccacctgcatatgatgaaaagatcacggagttgaagctatcagtggatagcctagagaaggagagagatttctactttgcaaagctcagagatattgagatactatgccagactcctgaaattgaacacctatctgttgttgctgctatacagaagattttatatgctacagatgatgatgcgacagtggtggcacaagcgcaagccatgttgtctggcccctcaaaggaagcagagccctcgagcccaattgctgagccattgagtcccattgctgaggcttcaaatgagaaagcaagttcggagacccagaagaggaaaaccataaacaactttgatgtcgatgccgctgccatggcaacattatctccaaggcaaagggtctctgatgcttctgatgtccattgtagtgggtcacctctgatgacttgctga
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

327

Amino Acids

35.88

Weight (kDa)

6.56

Isoelectric Point (pI)

61.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015182)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67270
fragaria_vesca FvH4_1g16740
malus_domestica MD02G1178500.v1.1 MD15G1288400.v1.1
prunus_persica Prupe.6G229300_v2.0.a1
pyrus_communis pycom02g14460
rosa_chinensis RchiOBHm_Chr2g0106641
rosa_laevigata RLG00000017525
rosa_multiflora Rmu_sc0006221.1_g000003
rosa_roxburghii Rroxscaffold_2G00136930
rosa_rugosa Rorug02G0137000
rosa_samantha Rh2AG188400 Rh2BG199400 Rh2CG193400 Rh2DG194600
rosa_wichuraiana Rw2G014790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 562
Acc36I ACCTGC 1 cut(s) 562
AccB7I CCANNNNNTGG 1 cut(s) 121
AccII CGCG 3 cut(s) 14, 104, 128
AciI CCGC 4 cut(s) 104, 128, 426, 897
AclWI GGATC 2 cut(s) 56, 187
AcyI GRCGYC 1 cut(s) 171
AfaI GTAC 3 cut(s) 17, 436, 489
AfeI AGCGCT 1 cut(s) 317
AfiI CCNNNNNNNGG 6 cut(s) 121, 497, 498, 607, 775, 864
AgsI TTSAA 5 cut(s) 215, 226, 583, 674, 834
AjnI CCWGG 1 cut(s) 44
AluBI AGCT 8 cut(s) 118, 265, 348, 374, 407, 455, 586, 634
AluI AGCT 8 cut(s) 118, 265, 348, 374, 407, 455, 586, 634
Alw21I GWGCWC 1 cut(s) 457
Alw26I GTCTC 2 cut(s) 848, 937
AlwI GGATC 2 cut(s) 56, 187
Ama87I CYCGRG 1 cut(s) 790
Aor51HI AGCGCT 1 cut(s) 317
AoxI GGCC 5 cut(s) 42, 278, 516, 541, 766
ApeKI GCWGC 4 cut(s) 339, 407, 692, 899
AspLEI GCGC 4 cut(s) 14, 104, 318, 751
AspS9I GGNCC 3 cut(s) 106, 542, 767
AsuC2I CCSGG 1 cut(s) 138
AsuHPI GGTGA 1 cut(s) 957
AvaI CYCGRG 1 cut(s) 790
AvaII GGWCC 1 cut(s) 106
BanII GRGCYC 3 cut(s) 457, 789, 797
BarI GAAGNNNNNNTAC 2 cut(s) 427, 459
BbsI GAAGAC 1 cut(s) 214
Bbv12I GWGCWC 1 cut(s) 457
BbvCI CCTCAGC 1 cut(s) 825
BbvI GCAGC 4 cut(s) 326, 394, 679, 886
BccI CCATC 3 cut(s) 78, 115, 136
BceAI ACGGC 1 cut(s) 25
BcgI CGANNNNNNTGC 4 cut(s) 771, 805, 881, 915
BciT130I CCWGG 1 cut(s) 46
BcnI CCSGG 1 cut(s) 138
BcoDI GTCTC 2 cut(s) 848, 937
BfaI CTAG 3 cut(s) 474, 534, 602
BfmI CTRYAG 1 cut(s) 717
BfoI RGCGCY 1 cut(s) 319
BfuAI ACCTGC 1 cut(s) 562
BglII AGATCT 2 cut(s) 29, 36
BisI GCNGC 6 cut(s) 129, 340, 408, 693, 897, 900
BlpI GCTNAGC 1 cut(s) 804
BlsI GCNGC 6 cut(s) 130, 341, 409, 694, 898, 901
Bme1390I CCNGG 2 cut(s) 46, 138
Bme18I GGWCC 1 cut(s) 106
BmeT110I CYCGRG 1 cut(s) 790
BmgT120I GGNCC 3 cut(s) 106, 542, 767
BmiI GGNNCC 2 cut(s) 147, 769
BmrFI CCNGG 2 cut(s) 46, 138
BmsI GCATC 4 cut(s) 141, 718, 883, 928
BpiI GAAGAC 1 cut(s) 214
BpmI CTGGAG 1 cut(s) 380
Bpu10I CCTNAGC 2 cut(s) 429, 825
Bpu1102I GCTNAGC 1 cut(s) 804
BpuEI CTTGAG 1 cut(s) 505
BpuMI CCSGG 1 cut(s) 138
BsaHI GRCGYC 1 cut(s) 171
BsaI GGTCTC 2 cut(s) 848, 937
BsaJI CCNNGG 3 cut(s) 137, 903, 920
BsaXI ACNNNNNCTCC 2 cut(s) 901, 931
Bsc4I CCNNNNNNNGG 6 cut(s) 121, 497, 498, 607, 775, 864
Bse3DI GCAATG 2 cut(s) 311, 819
BseBI CCWGG 1 cut(s) 46
BseDI CCNNGG 3 cut(s) 137, 903, 920
BseGI GGATG 4 cut(s) 133, 147, 315, 422
BseLI CCNNNNNNNGG 6 cut(s) 121, 497, 498, 607, 775, 864
BseMI GCAATG 2 cut(s) 311, 819
BseMII CTCAG 4 cut(s) 24, 649, 795, 816
BseRI GAGGAG 1 cut(s) 379
BseXI GCAGC 4 cut(s) 326, 394, 679, 886
BsgI GTGCAG 1 cut(s) 325
Bsh1236I CGCG 3 cut(s) 14, 104, 128
BshFI GGCC 5 cut(s) 44, 280, 518, 543, 768
BsiHKAI GWGCWC 1 cut(s) 457
BsiHKCI CYCGRG 1 cut(s) 790
BsiSI CCGG 2 cut(s) 99, 137
BslFI GGGAC 1 cut(s) 801
BslI CCNNNNNNNGG 6 cut(s) 121, 497, 498, 607, 775, 864
BsmAI GTCTC 2 cut(s) 848, 937
BsmFI GGGAC 1 cut(s) 801
BsnI GGCC 5 cut(s) 44, 280, 518, 543, 768
Bso31I GGTCTC 2 cut(s) 848, 937
BsoBI CYCGRG 1 cut(s) 790
Bsp1286I GDGCHC 3 cut(s) 457, 789, 797
Bsp143I GATC 5 cut(s) 29, 36, 48, 192, 570
Bsp1720I GCTNAGC 1 cut(s) 804
Bsp19I CCATGG 1 cut(s) 903
BspACI CCGC 4 cut(s) 104, 128, 426, 897
BspANI GGCC 5 cut(s) 44, 280, 518, 543, 768
BspCNI CTCAG 4 cut(s) 25, 648, 796, 817
BspFNI CGCG 3 cut(s) 14, 104, 128
BspLI GGNNCC 2 cut(s) 147, 769
BspMI ACCTGC 1 cut(s) 562
BspPI GGATC 2 cut(s) 56, 187
BspTNI GGTCTC 2 cut(s) 848, 937
BsrDI GCAATG 2 cut(s) 311, 819
BssECI CCNNGG 3 cut(s) 137, 903, 920
BssMI GATC 5 cut(s) 29, 36, 48, 192, 570
BssNI GRCGYC 1 cut(s) 171
BssT1I CCWWGG 2 cut(s) 903, 920
Bst2UI CCWGG 1 cut(s) 46
Bst4CI ACNGT 2 cut(s) 323, 736
Bst6I CTCTTC 2 cut(s) 81, 857
BstACI GRCGYC 1 cut(s) 171
BstC8I GCNNGC 4 cut(s) 116, 263, 376, 753
BstDEI CTNAG 5 cut(s) 33, 429, 635, 804, 825
BstDSI CCRYGG 1 cut(s) 903
BstEII GGTNACC 1 cut(s) 963
BstENI CCTNNNNNAGG 1 cut(s) 605
BstF5I GGATG 4 cut(s) 133, 147, 315, 422
BstFNI CGCG 3 cut(s) 14, 104, 128
BstH2I RGCGCY 1 cut(s) 319
BstHHI GCGC 4 cut(s) 14, 104, 318, 751
BstKTI GATC 5 cut(s) 32, 39, 51, 195, 573
BstMAI GTCTC 2 cut(s) 848, 937
BstMBI GATC 5 cut(s) 29, 36, 48, 192, 570
BstMWI GCNNNNNNNGC 3 cut(s) 345, 554, 905
BstNI CCWGG 1 cut(s) 46
BstNSI RCATGY 1 cut(s) 96
BstPI GGTNACC 1 cut(s) 963
BstSCI CCNGG 2 cut(s) 44, 136
BstSFI CTRYAG 1 cut(s) 717
BstUI CGCG 3 cut(s) 14, 104, 128
BstV1I GCAGC 4 cut(s) 326, 394, 679, 886
BstV2I GAAGAC 1 cut(s) 214
BstX2I RGATCY 2 cut(s) 29, 36
BstXI CCANNNNNNTGG 1 cut(s) 959
BstYI RGATCY 2 cut(s) 29, 36
BsuRI GGCC 5 cut(s) 44, 280, 518, 543, 768
BtgI CCRYGG 1 cut(s) 903
BtsCI GGATG 4 cut(s) 133, 147, 315, 422
BtsI GCAGTG 1 cut(s) 109
BtsIMutI CAGTG 3 cut(s) 109, 597, 741
BveI ACCTGC 1 cut(s) 562
Cac8I GCNNGC 4 cut(s) 116, 263, 376, 753
CfoI GCGC 4 cut(s) 14, 104, 318, 751
Cfr13I GGNCC 3 cut(s) 106, 542, 767
CseI GACGC 2 cut(s) 134, 179
Csp6I GTAC 3 cut(s) 16, 435, 488
CviAII CATG 4 cut(s) 93, 301, 757, 904
CviQI GTAC 3 cut(s) 16, 435, 488
DdeI CTNAG 5 cut(s) 33, 429, 635, 804, 825
DpnI GATC 5 cut(s) 31, 38, 50, 194, 572
DpnII GATC 5 cut(s) 29, 36, 48, 192, 570
Eam1104I CTCTTC 2 cut(s) 81, 857
EarI CTCTTC 2 cut(s) 81, 857
Ecl136II GAGCTC 1 cut(s) 455
Eco130I CCWWGG 2 cut(s) 903, 920
Eco147I AGGCCT 2 cut(s) 280, 518
Eco24I GRGCYC 3 cut(s) 457, 789, 797
Eco31I GGTCTC 2 cut(s) 848, 937
Eco47I GGWCC 1 cut(s) 106
Eco47III AGCGCT 1 cut(s) 317
Eco53kI GAGCTC 1 cut(s) 455
Eco88I CYCGRG 1 cut(s) 790
Eco91I GGTNACC 1 cut(s) 963
EcoICRI GAGCTC 1 cut(s) 455
EcoNI CCTNNNNNAGG 1 cut(s) 605
EcoO109I RGGNCCY 1 cut(s) 542
EcoO65I GGTNACC 1 cut(s) 963
EcoRII CCWGG 1 cut(s) 44
EcoT14I CCWWGG 2 cut(s) 903, 920
EcoT38I GRGCYC 3 cut(s) 457, 789, 797
ErhI CCWWGG 2 cut(s) 903, 920
FaeI CATG 4 cut(s) 96, 304, 760, 907
FalI AAGNNNNNCTT 2 cut(s) 514, 546
FaqI GGGAC 1 cut(s) 801
FatI CATG 4 cut(s) 92, 300, 756, 903
FauNDI CATATG 1 cut(s) 559
Fnu4HI GCNGC 6 cut(s) 129, 340, 408, 693, 897, 900
FokI GGATG 4 cut(s) 120, 154, 322, 409
FriOI GRGCYC 3 cut(s) 457, 789, 797
Fsp4HI GCNGC 6 cut(s) 129, 340, 408, 693, 897, 900
FspBI CTAG 3 cut(s) 474, 534, 602
GlaI GCGC 4 cut(s) 13, 103, 317, 750
GluI GCNGC 6 cut(s) 129, 340, 408, 693, 897, 900
GsuI CTGGAG 1 cut(s) 380
HaeII RGCGCY 1 cut(s) 319
HaeIII GGCC 5 cut(s) 44, 280, 518, 543, 768
HapII CCGG 2 cut(s) 99, 137
HgaI GACGC 2 cut(s) 134, 179
HhaI GCGC 4 cut(s) 14, 104, 318, 751
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 4 cut(s) 96, 304, 760, 907
Hin6I GCGC 4 cut(s) 12, 102, 316, 749
HinP1I GCGC 4 cut(s) 12, 102, 316, 749
HindIII AAGCTT 2 cut(s) 263, 372
HinfI GANTC 4 cut(s) 326, 502, 661, 814
HpaII CCGG 2 cut(s) 99, 137
HphI GGTGA 1 cut(s) 957
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 7 cut(s) 34, 150, 638, 853, 937, 946, 972
Hpy188III TCNNGA 6 cut(s) 196, 215, 284, 359, 522, 665
Hpy8I GTNNAC 1 cut(s) 109
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 3 cut(s) 270, 537, 601
HpyCH4III ACNGT 2 cut(s) 323, 736
HpyCH4V TGCA 6 cut(s) 154, 304, 342, 378, 557, 629
HpyF10VI GCNNNNNNNGC 3 cut(s) 345, 554, 905
HpyF3I CTNAG 5 cut(s) 33, 429, 635, 804, 825
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 4 cut(s) 96, 304, 760, 907
HspAI GCGC 4 cut(s) 12, 102, 316, 749
Kzo9I GATC 5 cut(s) 29, 36, 48, 192, 570
Lsp1109I GCAGC 4 cut(s) 326, 394, 679, 886
LweI GCATC 4 cut(s) 141, 718, 883, 928
MaeI CTAG 3 cut(s) 474, 534, 602
MaeIII GTNAC 1 cut(s) 963
MalI GATC 5 cut(s) 31, 38, 50, 194, 572
MboI GATC 5 cut(s) 29, 36, 48, 192, 570
MboII GAAGA 7 cut(s) 98, 203, 214, 489, 522, 715, 874
MfeI CAATTG 1 cut(s) 798
MflI RGATCY 2 cut(s) 29, 36
MhlI GDGCHC 3 cut(s) 457, 789, 797
MluCI AATT 5 cut(s) 163, 237, 289, 669, 798
MlyI GAGTC 2 cut(s) 655, 823
MmeI TCCRAC 1 cut(s) 88
MslI CAYNNNNRTG 1 cut(s) 957
MspA1I CMGCKG 2 cut(s) 118, 899
MspI CCGG 2 cut(s) 99, 137
MspR9I CCNGG 2 cut(s) 46, 138
MunI CAATTG 1 cut(s) 798
MvaI CCWGG 1 cut(s) 46
MvnI CGCG 3 cut(s) 14, 104, 128
MwoI GCNNNNNNNGC 3 cut(s) 345, 554, 905
NciI CCSGG 1 cut(s) 138
NcoI CCATGG 1 cut(s) 903
NdeI CATATG 1 cut(s) 559
NdeII GATC 5 cut(s) 29, 36, 48, 192, 570
NlaIII CATG 4 cut(s) 96, 304, 760, 907
NlaIV GGNNCC 2 cut(s) 147, 769
NmuCI GTSAC 1 cut(s) 963
NspI RCATGY 1 cut(s) 96
PaeR7I CTCGAG 1 cut(s) 790
PaqCI CACCTGC 1 cut(s) 562
PceI AGGCCT 2 cut(s) 280, 518
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PfeI GAWTC 2 cut(s) 326, 502
PflMI CCANNNNNTGG 1 cut(s) 121
PkrI GCNGC 6 cut(s) 130, 341, 409, 694, 898, 901
PleI GAGTC 2 cut(s) 655, 822
PpsI GAGTC 2 cut(s) 655, 822
Psp124BI GAGCTC 1 cut(s) 457
Psp6I CCWGG 1 cut(s) 44
PspEI GGTNACC 1 cut(s) 963
PspGI CCWGG 1 cut(s) 44
PspN4I GGNNCC 2 cut(s) 147, 769
PspPI GGNCC 3 cut(s) 106, 542, 767
PspXI VCTCGAGB 1 cut(s) 790
PsuI RGATCY 2 cut(s) 29, 36
PvuII CAGCTG 1 cut(s) 118
RsaI GTAC 3 cut(s) 17, 436, 489
RsaNI GTAC 3 cut(s) 16, 435, 488
RseI CAYNNNNRTG 1 cut(s) 957
SacI GAGCTC 1 cut(s) 457
SatI GCNGC 6 cut(s) 129, 340, 408, 693, 897, 900
Sau3AI GATC 5 cut(s) 29, 36, 48, 192, 570
Sau96I GGNCC 3 cut(s) 106, 542, 767
SchI GAGTC 2 cut(s) 655, 823
ScrFI CCNGG 2 cut(s) 46, 138
SduI GDGCHC 3 cut(s) 457, 789, 797
SfaNI GCATC 4 cut(s) 141, 718, 883, 928
SfcI CTRYAG 1 cut(s) 717
Sfr274I CTCGAG 1 cut(s) 790
SinI GGWCC 1 cut(s) 106
SlaI CTCGAG 1 cut(s) 790
SmiMI CAYNNNNRTG 1 cut(s) 957
SmlI CTYRAG 2 cut(s) 520, 790
SmoI CTYRAG 2 cut(s) 520, 790
Sse9I AATT 5 cut(s) 163, 237, 289, 669, 798
SseBI AGGCCT 2 cut(s) 280, 518
SsiI CCGC 4 cut(s) 104, 128, 426, 897
SspMI CTAG 3 cut(s) 474, 534, 602
SstI GAGCTC 1 cut(s) 457
StuI AGGCCT 2 cut(s) 280, 518
StyD4I CCNGG 2 cut(s) 44, 136
StyI CCWWGG 2 cut(s) 903, 920
TaaI ACNGT 2 cut(s) 323, 736
TaqI TCGA 4 cut(s) 84, 285, 791, 891
TasI AATT 5 cut(s) 163, 237, 289, 669, 798
TauI GCSGC 2 cut(s) 131, 899
TfiI GAWTC 2 cut(s) 326, 502
TscAI CASTG 3 cut(s) 116, 597, 741
TseFI GTSAC 1 cut(s) 963
TseI GCWGC 4 cut(s) 339, 407, 692, 899
Tsp45I GTSAC 1 cut(s) 963
TspDTI ATGAA 3 cut(s) 289, 326, 579
TspGWI ACGGA 1 cut(s) 590
TspRI CASTG 3 cut(s) 116, 597, 741
Van91I CCANNNNNTGG 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 106
XagI CCTNNNNNAGG 1 cut(s) 605
XceI RCATGY 1 cut(s) 96
XhoI CTCGAG 1 cut(s) 790
XspI CTAG 3 cut(s) 474, 534, 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.