FvH4_1g17450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0003419
Physical Location & Seq
Forward (+)
10123421 .. 10125367
1947 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g17450.t5

Sequence Viewer

Length: 603 bp
ATGGCCCAGTTCATTTCCTTTGTGTATTTTACAAGGACTTGTCCAAAAAGTATAAATAGATTTCCAAGAGCCAAAGCCGACCTTTCTCAAAATCTAAACTTCTCGTTCTCACACTTCTTCGTCTTCTTCTTCCTTCTTATTCGATTCTGCTTTGTTTCCATTTTTGGCGGGGTTCCAATTCGGGTTTGTTGCCTTGACAATTCCATTCTCGAATTGGGTTTCTATCTGAATCCGATTTTGGTTTTGATTTTGATCGGAAGGAATCTTGGTCCTAGGCTCGTATTACCTACTGATTGGTGTTGCAGATCATTAAGTGCAATGGATCCCGGAAAGCTGGGGGAGATACTGAAGCACTTGGAGACGCAGAACGAGCTCCTTACGAACGCGTCTGAATCAGTAATACAAGAATTGTCTAAGCTTCGGGGAGAAGAAGAAATGATGATGCGCAAGTATTACGCTATTATGTCAGAGCATGGTAAAGTAAAAAAGGTTCAAGAACTTCATGAATTTTGGCAGAAGCATGGCCACAGGGAAGTTTCAACTGACAATGAAACCGGAAACTCTACTGCATTAGTCACTGTTAATAGCGAAGAAGAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

23.01

Weight (kDa)

6.59

Isoelectric Point (pI)

31.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 446
AccII CGCG 1 cut(s) 386
AciI CCGC 1 cut(s) 168
AclWI GGATC 2 cut(s) 317, 330
AcoI YGGCCR 1 cut(s) 523
AcsI RAATTY 1 cut(s) 506
AcuI CTGAAG 1 cut(s) 368
AflIII ACRYGT 1 cut(s) 384
AgsI TTSAA 2 cut(s) 494, 540
AjuI GAANNNNNNNTTGG 2 cut(s) 221, 253
AluBI AGCT 3 cut(s) 334, 373, 418
AluI AGCT 3 cut(s) 334, 373, 418
Alw21I GWGCWC 1 cut(s) 375
Alw26I GTCTC 1 cut(s) 353
AlwI GGATC 2 cut(s) 317, 330
AoxI GGCC 2 cut(s) 3, 523
ApoI RAATTY 1 cut(s) 506
AspA2I CCTAGG 1 cut(s) 272
AspLEI GCGC 1 cut(s) 447
AspS9I GGNCC 2 cut(s) 4, 269
AsuC2I CCSGG 1 cut(s) 327
AvaII GGWCC 1 cut(s) 269
AvrII CCTAGG 1 cut(s) 272
BalI TGGCCA 1 cut(s) 525
BamHI GGATCC 1 cut(s) 322
BanII GRGCYC 1 cut(s) 375
BbsI GAAGAC 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 375
BcnI CCSGG 1 cut(s) 327
BcoDI GTCTC 1 cut(s) 353
BfaI CTAG 1 cut(s) 273
BlnI CCTAGG 1 cut(s) 272
Bme1390I CCNGG 1 cut(s) 327
Bme18I GGWCC 1 cut(s) 269
BmgT120I GGNCC 2 cut(s) 4, 269
BmiI GGNNCC 2 cut(s) 174, 324
BmrFI CCNGG 1 cut(s) 327
BmsI GCATC 1 cut(s) 432
BpiI GAAGAC 1 cut(s) 115
BpuMI CCSGG 1 cut(s) 327
BsaBI GATNNNNATC 1 cut(s) 251
BsaJI CCNNGG 1 cut(s) 272
BsaWI WCCGGW 1 cut(s) 554
Bse1I ACTGG 1 cut(s) 7
Bse3DI GCAATG 1 cut(s) 324
Bse8I GATNNNNATC 1 cut(s) 251
BseDI CCNNGG 1 cut(s) 272
BseJI GATNNNNATC 1 cut(s) 251
BseMI GCAATG 1 cut(s) 324
BseNI ACTGG 1 cut(s) 7
BseYI CCCAGC 1 cut(s) 334
Bsh1236I CGCG 1 cut(s) 386
BshFI GGCC 2 cut(s) 5, 525
BsiHKAI GWGCWC 1 cut(s) 375
BsiSI CCGG 2 cut(s) 327, 555
BsmAI GTCTC 1 cut(s) 353
BsmBI CGTCTC 1 cut(s) 353
BsnI GGCC 2 cut(s) 5, 525
Bsp1286I GDGCHC 1 cut(s) 375
Bsp143I GATC 3 cut(s) 252, 305, 322
BspACI CCGC 1 cut(s) 168
BspANI GGCC 2 cut(s) 5, 525
BspFNI CGCG 1 cut(s) 386
BspHI TCATGA 1 cut(s) 502
BspLI GGNNCC 2 cut(s) 174, 324
BspPI GGATC 2 cut(s) 317, 330
BsrDI GCAATG 1 cut(s) 324
BsrI ACTGG 1 cut(s) 7
BssECI CCNNGG 1 cut(s) 272
BssMI GATC 3 cut(s) 252, 305, 322
BssT1I CCWWGG 1 cut(s) 272
Bst4CI ACNGT 1 cut(s) 580
BstDEI CTNAG 1 cut(s) 414
BstFNI CGCG 1 cut(s) 386
BstHHI GCGC 1 cut(s) 447
BstKTI GATC 3 cut(s) 255, 308, 325
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 3 cut(s) 252, 305, 322
BstMWI GCNNNNNNNGC 1 cut(s) 370
BstSCI CCNGG 1 cut(s) 325
BstUI CGCG 1 cut(s) 386
BstV2I GAAGAC 1 cut(s) 115
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BsuRI GGCC 2 cut(s) 5, 525
BtsIMutI CAGTG 1 cut(s) 576
CciI TCATGA 1 cut(s) 502
CfoI GCGC 1 cut(s) 447
Cfr13I GGNCC 2 cut(s) 4, 269
CseI GACGC 2 cut(s) 370, 375
CviAII CATG 3 cut(s) 473, 503, 521
CviJI RGCY 8 cut(s) 5, 71, 77, 277, 334, 373, 418, 525
CviKI_1 RGCY 8 cut(s) 5, 71, 77, 277, 334, 373, 418, 525
DdeI CTNAG 1 cut(s) 414
DpnI GATC 3 cut(s) 254, 307, 324
DpnII GATC 3 cut(s) 252, 305, 322
EaeI YGGCCR 1 cut(s) 523
Ecl136II GAGCTC 1 cut(s) 373
Eco130I CCWWGG 1 cut(s) 272
Eco24I GRGCYC 1 cut(s) 375
Eco47I GGWCC 1 cut(s) 269
Eco53kI GAGCTC 1 cut(s) 373
Eco57I CTGAAG 1 cut(s) 368
EcoICRI GAGCTC 1 cut(s) 373
EcoT14I CCWWGG 1 cut(s) 272
EcoT38I GRGCYC 1 cut(s) 375
ErhI CCWWGG 1 cut(s) 272
Esp3I CGTCTC 1 cut(s) 353
FaeI CATG 3 cut(s) 476, 506, 524
FaiI YATR 5 cut(s) 53, 464, 474, 504, 522
FalI AAGNNNNNCTT 2 cut(s) 66, 98
FatI CATG 3 cut(s) 472, 502, 520
FauI CCCGC 1 cut(s) 161
FriOI GRGCYC 1 cut(s) 375
FspBI CTAG 1 cut(s) 273
FspI TGCGCA 1 cut(s) 446
GlaI GCGC 1 cut(s) 446
GsaI CCCAGC 1 cut(s) 338
HaeIII GGCC 2 cut(s) 5, 525
HapII CCGG 2 cut(s) 327, 555
HgaI GACGC 2 cut(s) 370, 375
HhaI GCGC 1 cut(s) 447
Hin1II CATG 3 cut(s) 476, 506, 524
Hin6I GCGC 1 cut(s) 445
HinP1I GCGC 1 cut(s) 445
HindIII AAGCTT 1 cut(s) 416
HinfI GANTC 4 cut(s) 144, 229, 262, 392
HpaII CCGG 2 cut(s) 327, 555
Hpy188I TCNGA 5 cut(s) 228, 234, 257, 391, 469
Hpy188III TCNNGA 3 cut(s) 209, 494, 503
HpyAV CCTTC 2 cut(s) 143, 252
HpyCH4III ACNGT 1 cut(s) 580
HpyCH4V TGCA 3 cut(s) 303, 317, 569
HpyF10VI GCNNNNNNNGC 1 cut(s) 370
HpyF3I CTNAG 1 cut(s) 414
Hsp92II CATG 3 cut(s) 476, 506, 524
HspAI GCGC 1 cut(s) 445
Kzo9I GATC 3 cut(s) 252, 305, 322
LmnI GCTCC 1 cut(s) 378
LpnPI CCDG 5 cut(s) 20, 320, 340, 514, 568
LweI GCATC 1 cut(s) 432
MaeI CTAG 1 cut(s) 273
MaeIII GTNAC 1 cut(s) 574
MalI GATC 3 cut(s) 254, 307, 324
MboI GATC 3 cut(s) 252, 305, 322
MboII GAAGA 7 cut(s) 109, 115, 118, 121, 440, 443, 602
MflI RGATCY 1 cut(s) 322
MhlI GDGCHC 1 cut(s) 375
MlsI TGGCCA 1 cut(s) 525
MluCI AATT 5 cut(s) 177, 199, 212, 407, 506
MluI ACGCGT 1 cut(s) 384
MluNI TGGCCA 1 cut(s) 525
Mox20I TGGCCA 1 cut(s) 525
MscI TGGCCA 1 cut(s) 525
MseI TTAA 2 cut(s) 311, 582
Msp20I TGGCCA 1 cut(s) 525
MspI CCGG 2 cut(s) 327, 555
MspR9I CCNGG 1 cut(s) 327
MvnI CGCG 1 cut(s) 386
MwoI GCNNNNNNNGC 1 cut(s) 370
NciI CCSGG 1 cut(s) 327
NdeII GATC 3 cut(s) 252, 305, 322
NlaIII CATG 3 cut(s) 476, 506, 524
NlaIV GGNNCC 2 cut(s) 174, 324
NmuCI GTSAC 1 cut(s) 574
NsbI TGCGCA 1 cut(s) 446
PagI TCATGA 1 cut(s) 502
PfeI GAWTC 4 cut(s) 144, 229, 262, 392
PfoI TCCNGGA 1 cut(s) 325
Psp124BI GAGCTC 1 cut(s) 375
PspFI CCCAGC 1 cut(s) 334
PspN4I GGNNCC 2 cut(s) 174, 324
PspPI GGNCC 2 cut(s) 4, 269
PsrI GAACNNNNNNTAC 2 cut(s) 474, 506
PsuI RGATCY 1 cut(s) 322
SacI GAGCTC 1 cut(s) 375
SaqAI TTAA 2 cut(s) 311, 582
Sau3AI GATC 3 cut(s) 252, 305, 322
Sau96I GGNCC 2 cut(s) 4, 269
ScrFI CCNGG 1 cut(s) 327
SduI GDGCHC 1 cut(s) 375
SetI ASST 6 cut(s) 84, 289, 336, 375, 420, 492
SfaNI GCATC 1 cut(s) 432
SinI GGWCC 1 cut(s) 269
Sse9I AATT 5 cut(s) 177, 199, 212, 407, 506
SsiI CCGC 1 cut(s) 168
SspMI CTAG 1 cut(s) 273
SstI GAGCTC 1 cut(s) 375
StyD4I CCNGG 1 cut(s) 325
StyI CCWWGG 1 cut(s) 272
TaaI ACNGT 1 cut(s) 580
TaqI TCGA 2 cut(s) 142, 210
TasI AATT 5 cut(s) 177, 199, 212, 407, 506
TfiI GAWTC 4 cut(s) 144, 229, 262, 392
Tru1I TTAA 2 cut(s) 311, 582
Tru9I TTAA 2 cut(s) 311, 582
TscAI CASTG 1 cut(s) 583
TseFI GTSAC 1 cut(s) 574
Tsp45I GTSAC 1 cut(s) 574
TspDTI ATGAA 3 cut(s) 491, 519, 564
TspRI CASTG 1 cut(s) 583
VpaK11BI GGWCC 1 cut(s) 269
XapI RAATTY 1 cut(s) 506
XcmI CCANNNNNNNNNTGG 1 cut(s) 211
XmaJI CCTAGG 1 cut(s) 272
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.