Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003419

Physical Location & Seq

Genomic Coordinates Forward (+)

27710996 .. 27713302

Gene Structure 2307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1295400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGACCCTAGATACACAGGAGAGATATTGAAGCATTTGGAGAAGCAAAACGAGCTCCTCACAGAAGCCAAAATATCAATGTCTGAGGAATTGCATCAACTGAAGGTAGAAGAGGAAATGCTGATGCGTAAGTTTTATGAGATTATGTCAGCTCATGGTAAAGTGAAAAAGAATGAAGATCGTGGTAAGGTTTCAGATGATGGTGAAATTGGAAGTTCCACAGCATTAGCCATAGCCAAAACAAGTAACGATGAGGATTGCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

89

Amino Acids

10.06

Weight (kDa)

5.19

Isoelectric Point (pI)

37.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37608 AT4G37608
fragaria_vesca	FvH4_1g17450 FvH4_1g17450 FvH4_1g17450 FvH4_1g17450 FvH4_1g17450 FvH4_5g27530
malus_domestica	MD02G1183800.v1.1 MD15G1295400.v1.1
prunus_persica	Prupe.6G222400_v2.0.a1 Prupe.6G222400_v2.0.a1 Prupe.6G222400_v2.0.a1 Prupe.6G222400_v2.0.a1 Prupe.6G222400_v2.0.a1 Prupe.6G222400_v2.0.a1 Prupe.6G222400_v2.0.a1
pyrus_communis	pycom15g25830
rosa_chinensis	RchiOBHm_Chr5g0053551 RchiOBHm_Chr5g0053611
rosa_multiflora	Rmu_sc0010274.1_g000016
rosa_roxburghii	Rroxscaffold_2G00136080
rosa_rugosa	Rorug02G0146200 Rorug02G0146300 Rorug02G0146400 Rorug02G0146500 Rorug02G0146600.1 Rorug02G0146700
rosa_samantha	Rh2AG196000 Rh2BG208400 Rh2CG201100 Rh2DG203500 Rh5AG351800 Rh5AG352200 Rh7BG220400
rosa_wichuraiana	Rw2G015510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	122
AgsI	TTSAA	1 cut(s)	31
AluBI	AGCT	2 cut(s)	55, 152
AluI	AGCT	2 cut(s)	55, 152
Alw21I	GWGCWC	1 cut(s)	57
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	57
BccI	CCATC	1 cut(s)	194
BfaI	CTAG	1 cut(s)	9
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	2 cut(s)	103, 114
BseMII	CTCAG	1 cut(s)	75
BseRI	GAGGAG	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	1 cut(s)	178
BspCNI	CTCAG	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	6
BssMI	GATC	1 cut(s)	178
Bst6I	CTCTTC	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	84
BstKTI	GATC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	1 cut(s)	155
CviJI	RGCY	5 cut(s)	55, 68, 152, 230, 236
CviKI_1	RGCY	5 cut(s)	55, 68, 152, 230, 236
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Ecl136II	GAGCTC	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	122
EcoICRI	GAGCTC	1 cut(s)	55
EcoT38I	GRGCYC	1 cut(s)	57
FaeI	CATG	1 cut(s)	158
FaiI	YATR	4 cut(s)	138, 146, 156, 233
FatI	CATG	1 cut(s)	154
FriOI	GRGCYC	1 cut(s)	57
FspBI	CTAG	1 cut(s)	9
Hin1II	CATG	1 cut(s)	158
HphI	GGTGA	1 cut(s)	215
Hpy188I	TCNGA	2 cut(s)	85, 196
HpyAV	CCTTC	1 cut(s)	97
HpyCH4V	TGCA	1 cut(s)	94
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpyF3I	CTNAG	1 cut(s)	84
Hsp92II	CATG	1 cut(s)	158
Kzo9I	GATC	1 cut(s)	178
LmnI	GCTCC	1 cut(s)	60
LpnPI	CCDG	1 cut(s)	3
LweI	GCATC	2 cut(s)	103, 114
MaeI	CTAG	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	2 cut(s)	122, 188
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	2 cut(s)	89, 207
MnlI	CCTC	4 cut(s)	68, 79, 106, 247
MwoI	GCNNNNNNNGC	1 cut(s)	52
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	1 cut(s)	158
NlaIV	GGNNCC	1 cut(s)	6
Psp124BI	GAGCTC	1 cut(s)	57
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	4
SacI	GAGCTC	1 cut(s)	57
Sau3AI	GATC	1 cut(s)	178
Sau96I	GGNCC	1 cut(s)	4
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	4 cut(s)	57, 108, 154, 192
SfaNI	GCATC	2 cut(s)	103, 114
SgeI	CNNG	6 cut(s)	21, 30, 64, 167, 194, 255
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	2 cut(s)	89, 207
SspMI	CTAG	1 cut(s)	9
SstI	GAGCTC	1 cut(s)	57
TasI	AATT	2 cut(s)	89, 207
TspDTI	ATGAA	1 cut(s)	189
VpaK11BI	GGWCC	1 cut(s)	4
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.