RchiOBHm_Chr5g0053611

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003419
Physical Location & Seq
Reverse (-)
56009330 .. 56011078
1749 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33089

Sequence Viewer

Length: 315 bp
ATGGATCCTGGAAACCTGGGAGAGATATTGAAGCACTTGGAGACGCAGAATGAGCTCCTTACGAAAGCGTCTGAATCAGTGCTACAAGAACTGTCTAATCTTCAGGGAGAAGAAGAAATGATGATGCGCAAGTACTACGCTATTATGTCGGAGCATGGTAAAGTTAAAAAGGTATATGTCTTTCTTAATTCTACCTCTGTGTTGTCCTCTGCTGACTTGAATCCCCAAGGTTTGGACCAAGTGTTAATTTCTGTTTTCTGTTGGTCATTGGTGCATCTTTTTTTCCTTATATGTGAGAACCCATTAAACCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.83

Weight (kDa)

5.03

Isoelectric Point (pI)

34.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 128
AccB7I CCANNNNNTGG 1 cut(s) 232
AclWI GGATC 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 86
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 1 cut(s) 232
AgsI TTSAA 2 cut(s) 31, 220
AjnI CCWGG 2 cut(s) 7, 15
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 1 cut(s) 35
AlwI GGATC 1 cut(s) 12
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 235
AvaII GGWCC 1 cut(s) 235
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 57
BciT130I CCWGG 2 cut(s) 9, 17
BcoDI GTCTC 1 cut(s) 35
BmcAI AGTACT 1 cut(s) 134
Bme1390I CCNGG 2 cut(s) 9, 17
Bme18I GGWCC 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 9, 17
BmsI GCATC 2 cut(s) 114, 283
BsaJI CCNNGG 2 cut(s) 16, 226
Bsc4I CCNNNNNNNGG 1 cut(s) 232
BseBI CCWGG 2 cut(s) 9, 17
BseDI CCNNGG 2 cut(s) 16, 226
BseLI CCNNNNNNNGG 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 232
BsmAI GTCTC 1 cut(s) 35
BsmBI CGTCTC 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 1 cut(s) 4
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 12
BssECI CCNNGG 2 cut(s) 16, 226
BssMI GATC 1 cut(s) 4
BssT1I CCWWGG 1 cut(s) 226
Bst2UI CCWGG 2 cut(s) 9, 17
Bst4CI ACNGT 1 cut(s) 93
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 1 cut(s) 7
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 1 cut(s) 52
BstNI CCWGG 2 cut(s) 9, 17
BstSCI CCNGG 2 cut(s) 7, 15
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BtsIMutI CAGTG 1 cut(s) 84
CfoI GCGC 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 235
CseI GACGC 2 cut(s) 52, 57
Csp6I GTAC 1 cut(s) 133
CviAII CATG 1 cut(s) 155
CviJI RGCY 1 cut(s) 55
CviKI_1 RGCY 1 cut(s) 55
CviQI GTAC 1 cut(s) 133
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
Ecl136II GAGCTC 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 226
Eco24I GRGCYC 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 235
Eco53kI GAGCTC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 86
EcoICRI GAGCTC 1 cut(s) 55
EcoRII CCWGG 2 cut(s) 7, 15
EcoT14I CCWWGG 1 cut(s) 226
EcoT38I GRGCYC 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 226
Esp3I CGTCTC 1 cut(s) 35
FaeI CATG 1 cut(s) 158
FaiI YATR 6 cut(s) 146, 156, 175, 177, 290, 292
FatI CATG 1 cut(s) 154
FriOI GRGCYC 1 cut(s) 57
FspI TGCGCA 1 cut(s) 128
GlaI GCGC 1 cut(s) 128
HgaI GACGC 2 cut(s) 52, 57
HhaI GCGC 1 cut(s) 129
Hin1II CATG 1 cut(s) 158
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HinfI GANTC 2 cut(s) 74, 220
Hpy188I TCNGA 2 cut(s) 73, 151
HpyCH4III ACNGT 1 cut(s) 93
HpyCH4V TGCA 1 cut(s) 274
HpyF10VI GCNNNNNNNGC 1 cut(s) 52
Hsp92II CATG 1 cut(s) 158
HspAI GCGC 1 cut(s) 127
Kzo9I GATC 1 cut(s) 4
LmnI GCTCC 2 cut(s) 60, 151
LpnPI CCDG 4 cut(s) 2, 21, 29, 89
LweI GCATC 2 cut(s) 114, 283
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 3 cut(s) 92, 122, 125
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 2 cut(s) 187, 246
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 2 cut(s) 205, 217
MseI TTAA 4 cut(s) 165, 186, 245, 305
MspR9I CCNGG 2 cut(s) 9, 17
MvaI CCWGG 2 cut(s) 9, 17
MwoI GCNNNNNNNGC 1 cut(s) 52
NdeII GATC 1 cut(s) 4
NlaIII CATG 1 cut(s) 158
NlaIV GGNNCC 1 cut(s) 6
NsbI TGCGCA 1 cut(s) 128
PfeI GAWTC 2 cut(s) 74, 220
PflMI CCANNNNNTGG 1 cut(s) 232
PfoI TCCNGGA 1 cut(s) 7
Psp124BI GAGCTC 1 cut(s) 57
Psp6I CCWGG 2 cut(s) 7, 15
PspGI CCWGG 2 cut(s) 7, 15
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 235
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SacI GAGCTC 1 cut(s) 57
SaqAI TTAA 4 cut(s) 165, 186, 245, 305
Sau3AI GATC 1 cut(s) 4
Sau96I GGNCC 1 cut(s) 235
ScaI AGTACT 1 cut(s) 134
ScrFI CCNGG 2 cut(s) 9, 17
SduI GDGCHC 1 cut(s) 57
SetI ASST 5 cut(s) 18, 57, 174, 197, 232
SfaNI GCATC 2 cut(s) 114, 283
SinI GGWCC 1 cut(s) 235
Sse9I AATT 2 cut(s) 187, 246
SstI GAGCTC 1 cut(s) 57
StyD4I CCNGG 2 cut(s) 7, 15
StyI CCWWGG 1 cut(s) 226
TaaI ACNGT 1 cut(s) 93
TasI AATT 2 cut(s) 187, 246
TatI WGTACW 1 cut(s) 132
TfiI GAWTC 2 cut(s) 74, 220
Tru1I TTAA 4 cut(s) 165, 186, 245, 305
Tru9I TTAA 4 cut(s) 165, 186, 245, 305
TscAI CASTG 1 cut(s) 84
TspRI CASTG 1 cut(s) 84
Van91I CCANNNNNTGG 1 cut(s) 232
VpaK11BI GGWCC 1 cut(s) 235
ZrmI AGTACT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.