Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003419

Physical Location & Seq

Genomic Coordinates Reverse (-)

58287044 .. 58295057

Gene Structure 8014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG352200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGTTTGATGCTATTCTTGCAAAGGCAGCCAAAATTTTGAAGAAGTATCAAGAAGACAAGCAAACTTCTATTCTGTTAGTGGCTAAAATTGGTGGAATATATTGGTGGTACCAGACAGTAGCACACCCTGCTGAACTCACAGCTGGATACTACAACACTGCTCTTAGGGATGGTTATGATCCTGTTGCTTCAATTTTTTCTCGTCATGGAGCTGCTTTGCATGTGTCCTGCTTGGAAATGATGGATGGTGAAACACCAGAATCCTATCTCTGCAGCCCAGAAGGATTACTGCAACAGTTATGGAGTGTTTCGAAGAAAAGGATAATACATTTGATCGGGAGAAACACCAACGAACGATTTGACATAAGTGCAATGGATCCTGGAAACCTGGGAGAGATATTGAAGCACTTGGAGACGCAGAATGAGCTCCTTACGAAAGCGTCTGAATCAGTGCTACAAGAACTGTCTAATCTTCAGGGAGAAGAAGAAATGATGATGCGCAAGGACTACGCTATTATGTCGGAGCATGGTAAAGTTAAAAAGGTTCAAGAACTTCATGAATTTTGGCAGAAGCATGGCCATGGAAAAGTTTCAACTGATACTGAAATCGGAAGCTCTACTGCATTAGTCACTGCTACTAGCAAAGAAGAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009536 GO:0009987 GO:0016052 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

218

Amino Acids

24.5

Weight (kDa)

5.72

Isoelectric Point (pI)

41.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_14	PF01373	21 - 126	4.1e-24	Glycosyl hydrolase family 14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37608 AT4G37608
fragaria_vesca	FvH4_1g17450 FvH4_1g17450 FvH4_1g17450 FvH4_1g17450 FvH4_1g17450 FvH4_5g27530
malus_domestica	MD02G1183800.v1.1 MD15G1295400.v1.1
prunus_persica	Prupe.6G222400_v2.0.a1 Prupe.6G222400_v2.0.a1 Prupe.6G222400_v2.0.a1 Prupe.6G222400_v2.0.a1 Prupe.6G222400_v2.0.a1 Prupe.6G222400_v2.0.a1 Prupe.6G222400_v2.0.a1
pyrus_communis	pycom15g25830
rosa_chinensis	RchiOBHm_Chr5g0053551 RchiOBHm_Chr5g0053611
rosa_multiflora	Rmu_sc0010274.1_g000016
rosa_roxburghii	Rroxscaffold_2G00136080
rosa_rugosa	Rorug02G0146200 Rorug02G0146300 Rorug02G0146400 Rorug02G0146500 Rorug02G0146600.1 Rorug02G0146700
rosa_samantha	Rh2AG196000 Rh2BG208400 Rh2CG201100 Rh2DG203500 Rh5AG351800 Rh5AG352200 Rh7BG220400
rosa_wichuraiana	Rw2G015510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	500
Acc65I	GGTACC	1 cut(s)	108
AccB1I	GGYRCC	1 cut(s)	108
AclWI	GGATC	3 cut(s)	173, 371, 384
AcoI	YGGCCR	1 cut(s)	577
AcsI	RAATTY	2 cut(s)	33, 560
AcuI	CTGAAG	1 cut(s)	458
AfaI	GTAC	1 cut(s)	110
AgsI	TTSAA	5 cut(s)	40, 192, 403, 548, 594
AjnI	CCWGG	2 cut(s)	379, 387
AluBI	AGCT	4 cut(s)	143, 212, 427, 615
AluI	AGCT	4 cut(s)	143, 212, 427, 615
Alw21I	GWGCWC	1 cut(s)	429
Alw26I	GTCTC	1 cut(s)	407
AlwI	GGATC	3 cut(s)	173, 371, 384
AoxI	GGCC	1 cut(s)	577
ApeKI	GCWGC	3 cut(s)	26, 212, 273
ApoI	RAATTY	2 cut(s)	33, 560
Asp700I	GAANNNNTTC	1 cut(s)	589
Asp718I	GGTACC	1 cut(s)	108
AspLEI	GCGC	1 cut(s)	501
AsuHPI	GGTGA	1 cut(s)	260
AsuII	TTCGAA	1 cut(s)	311
BalI	TGGCCA	1 cut(s)	579
BamHI	GGATCC	1 cut(s)	376
BanI	GGYRCC	1 cut(s)	108
BanII	GRGCYC	1 cut(s)	429
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	429
BbvI	GCAGC	3 cut(s)	38, 199, 285
BccI	CCATC	3 cut(s)	164, 235, 239
BciT130I	CCWGG	2 cut(s)	381, 389
BciVI	GTATCC	1 cut(s)	140
BcoDI	GTCTC	1 cut(s)	407
BfaI	CTAG	1 cut(s)	639
BfmI	CTRYAG	1 cut(s)	271
BfuI	GTATCC	1 cut(s)	140
BisI	GCNGC	3 cut(s)	27, 213, 274
BlsI	GCNGC	3 cut(s)	28, 214, 275
Bme1390I	CCNGG	2 cut(s)	381, 389
BmiI	GGNNCC	2 cut(s)	110, 378
BmrFI	CCNGG	2 cut(s)	381, 389
BmsI	GCATC	1 cut(s)	486
BpiI	GAAGAC	1 cut(s)	60
Bpu14I	TTCGAA	1 cut(s)	311
BsaJI	CCNNGG	2 cut(s)	388, 580
Bse3DI	GCAATG	1 cut(s)	378
BseBI	CCWGG	2 cut(s)	381, 389
BseDI	CCNNGG	2 cut(s)	388, 580
BseGI	GGATG	2 cut(s)	175, 250
BseMI	GCAATG	1 cut(s)	378
BseXI	GCAGC	3 cut(s)	38, 199, 285
BshFI	GGCC	1 cut(s)	579
BshNI	GGYRCC	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	429
BsmAI	GTCTC	1 cut(s)	407
BsmBI	CGTCTC	1 cut(s)	407
BsnI	GGCC	1 cut(s)	579
Bsp119I	TTCGAA	1 cut(s)	311
Bsp1286I	GDGCHC	1 cut(s)	429
Bsp143I	GATC	3 cut(s)	178, 333, 376
Bsp19I	CCATGG	1 cut(s)	580
BspANI	GGCC	1 cut(s)	579
BspHI	TCATGA	1 cut(s)	556
BspLI	GGNNCC	2 cut(s)	110, 378
BspMAI	CTGCAG	1 cut(s)	275
BspPI	GGATC	3 cut(s)	173, 371, 384
BspT104I	TTCGAA	1 cut(s)	311
BspT107I	GGYRCC	1 cut(s)	108
BsrDI	GCAATG	1 cut(s)	378
BssECI	CCNNGG	2 cut(s)	388, 580
BssMI	GATC	3 cut(s)	178, 333, 376
BssT1I	CCWWGG	1 cut(s)	580
Bst2UI	CCWGG	2 cut(s)	381, 389
Bst4CI	ACNGT	3 cut(s)	118, 297, 465
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstBI	TTCGAA	1 cut(s)	311
BstDEI	CTNAG	1 cut(s)	164
BstDSI	CCRYGG	1 cut(s)	580
BstF5I	GGATG	2 cut(s)	175, 250
BstHHI	GCGC	1 cut(s)	501
BstKTI	GATC	3 cut(s)	181, 336, 379
BstMAI	GTCTC	1 cut(s)	407
BstMBI	GATC	3 cut(s)	178, 333, 376
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 26, 128, 424
BstNI	CCWGG	2 cut(s)	381, 389
BstNSI	RCATGY	1 cut(s)	224
BstSCI	CCNGG	2 cut(s)	379, 387
BstSFI	CTRYAG	1 cut(s)	271
BstV1I	GCAGC	3 cut(s)	38, 199, 285
BstV2I	GAAGAC	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
BsuI	GTATCC	1 cut(s)	140
BsuRI	GGCC	1 cut(s)	579
BtgI	CCRYGG	1 cut(s)	580
BtsCI	GGATG	2 cut(s)	175, 250
BtsI	GCAGTG	2 cut(s)	156, 630
BtsIMutI	CAGTG	3 cut(s)	156, 456, 630
CciI	TCATGA	1 cut(s)	556
CfoI	GCGC	1 cut(s)	501
CseI	GACGC	2 cut(s)	424, 429
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	6 cut(s)	206, 221, 527, 557, 575, 581
CviJI	RGCY	8 cut(s)	29, 83, 143, 212, 276, 427, 579, 615
CviKI_1	RGCY	8 cut(s)	29, 83, 143, 212, 276, 427, 579, 615
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	1 cut(s)	164
DpnI	GATC	3 cut(s)	180, 335, 378
DpnII	GATC	3 cut(s)	178, 333, 376
EaeI	YGGCCR	1 cut(s)	577
Ecl136II	GAGCTC	1 cut(s)	427
Eco130I	CCWWGG	1 cut(s)	580
Eco24I	GRGCYC	1 cut(s)	429
Eco53kI	GAGCTC	1 cut(s)	427
Eco57I	CTGAAG	1 cut(s)	458
EcoICRI	GAGCTC	1 cut(s)	427
EcoRII	CCWGG	2 cut(s)	379, 387
EcoT14I	CCWWGG	1 cut(s)	580
EcoT38I	GRGCYC	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	580
Esp3I	CGTCTC	1 cut(s)	407
FaeI	CATG	6 cut(s)	209, 224, 530, 560, 578, 584
FatI	CATG	6 cut(s)	205, 220, 526, 556, 574, 580
Fnu4HI	GCNGC	3 cut(s)	27, 213, 274
FokI	GGATG	2 cut(s)	182, 257
FriOI	GRGCYC	1 cut(s)	429
Fsp4HI	GCNGC	3 cut(s)	27, 213, 274
FspBI	CTAG	1 cut(s)	639
FspI	TGCGCA	1 cut(s)	500
GlaI	GCGC	1 cut(s)	500
GluI	GCNGC	3 cut(s)	27, 213, 274
HaeIII	GGCC	1 cut(s)	579
HgaI	GACGC	2 cut(s)	424, 429
HhaI	GCGC	1 cut(s)	501
Hin1II	CATG	6 cut(s)	209, 224, 530, 560, 578, 584
Hin6I	GCGC	1 cut(s)	499
HinP1I	GCGC	1 cut(s)	499
HinfI	GANTC	2 cut(s)	260, 446
HphI	GGTGA	1 cut(s)	260
Hpy188I	TCNGA	3 cut(s)	445, 523, 611
Hpy188III	TCNNGA	4 cut(s)	50, 337, 548, 557
HpyAV	CCTTC	1 cut(s)	275
HpyCH4III	ACNGT	3 cut(s)	118, 297, 465
HpyCH4V	TGCA	6 cut(s)	20, 220, 273, 292, 371, 623
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 26, 128, 424
HpyF3I	CTNAG	1 cut(s)	164
Hsp92II	CATG	6 cut(s)	209, 224, 530, 560, 578, 584
HspAI	GCGC	1 cut(s)	499
KpnI	GGTACC	1 cut(s)	112
Kzo9I	GATC	3 cut(s)	178, 333, 376
LmnI	GCTCC	3 cut(s)	209, 432, 523
Lsp1109I	GCAGC	3 cut(s)	38, 199, 285
LweI	GCATC	1 cut(s)	486
MaeI	CTAG	1 cut(s)	639
MaeIII	GTNAC	1 cut(s)	628
MalI	GATC	3 cut(s)	180, 335, 378
MboI	GATC	3 cut(s)	178, 333, 376
MboII	GAAGA	6 cut(s)	52, 65, 325, 464, 494, 497
MflI	RGATCY	1 cut(s)	376
MhlI	GDGCHC	1 cut(s)	429
MlsI	TGGCCA	1 cut(s)	579
MluCI	AATT	4 cut(s)	33, 87, 192, 560
MluNI	TGGCCA	1 cut(s)	579
MmeI	TCCRAC	1 cut(s)	501
Mox20I	TGGCCA	1 cut(s)	579
MroXI	GAANNNNTTC	1 cut(s)	589
MscI	TGGCCA	1 cut(s)	579
MseI	TTAA	1 cut(s)	537
MslI	CAYNNNNRTG	1 cut(s)	579
Msp20I	TGGCCA	1 cut(s)	579
MspA1I	CMGCKG	1 cut(s)	143
MspR9I	CCNGG	2 cut(s)	381, 389
MvaI	CCWGG	2 cut(s)	381, 389
MwoI	GCNNNNNNNGC	4 cut(s)	17, 26, 128, 424
NcoI	CCATGG	1 cut(s)	580
NdeII	GATC	3 cut(s)	178, 333, 376
NlaIII	CATG	6 cut(s)	209, 224, 530, 560, 578, 584
NlaIV	GGNNCC	2 cut(s)	110, 378
NmuCI	GTSAC	1 cut(s)	628
NsbI	TGCGCA	1 cut(s)	500
NspI	RCATGY	1 cut(s)	224
NspV	TTCGAA	1 cut(s)	311
PagI	TCATGA	1 cut(s)	556
PdmI	GAANNNNTTC	1 cut(s)	589
PfeI	GAWTC	2 cut(s)	260, 446
PfoI	TCCNGGA	1 cut(s)	379
PkrI	GCNGC	3 cut(s)	28, 214, 275
Psp124BI	GAGCTC	1 cut(s)	429
Psp6I	CCWGG	2 cut(s)	379, 387
PspGI	CCWGG	2 cut(s)	379, 387
PspN4I	GGNNCC	2 cut(s)	110, 378
PstI	CTGCAG	1 cut(s)	275
PsuI	RGATCY	1 cut(s)	376
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
RseI	CAYNNNNRTG	1 cut(s)	579
SacI	GAGCTC	1 cut(s)	429
SaqAI	TTAA	1 cut(s)	537
SatI	GCNGC	3 cut(s)	27, 213, 274
Sau3AI	GATC	3 cut(s)	178, 333, 376
ScrFI	CCNGG	2 cut(s)	381, 389
SduI	GDGCHC	1 cut(s)	429
SetI	ASST	6 cut(s)	145, 214, 390, 429, 546, 617
SfaNI	GCATC	1 cut(s)	486
SfcI	CTRYAG	1 cut(s)	271
SfuI	TTCGAA	1 cut(s)	311
SmiMI	CAYNNNNRTG	1 cut(s)	579
Sse9I	AATT	4 cut(s)	33, 87, 192, 560
SspMI	CTAG	1 cut(s)	639
SstI	GAGCTC	1 cut(s)	429
StyD4I	CCNGG	2 cut(s)	379, 387
StyI	CCWWGG	1 cut(s)	580
TaaI	ACNGT	3 cut(s)	118, 297, 465
TaqI	TCGA	1 cut(s)	311
TasI	AATT	4 cut(s)	33, 87, 192, 560
TfiI	GAWTC	2 cut(s)	260, 446
Tru1I	TTAA	1 cut(s)	537
Tru9I	TTAA	1 cut(s)	537
TscAI	CASTG	3 cut(s)	163, 456, 637
TseFI	GTSAC	1 cut(s)	628
TseI	GCWGC	3 cut(s)	26, 212, 273
Tsp45I	GTSAC	1 cut(s)	628
TspDTI	ATGAA	2 cut(s)	545, 573
TspRI	CASTG	3 cut(s)	163, 456, 637
XapI	RAATTY	2 cut(s)	33, 560
XceI	RCATGY	1 cut(s)	224
XmnI	GAANNNNTTC	1 cut(s)	589
XspI	CTAG	1 cut(s)	639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.