Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003419

Physical Location & Seq

Genomic Coordinates Forward (+)

16678687 .. 16681450

Gene Structure 2764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1183800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGACCCTAGATACACTGGAGAGATTTTGAAGCATTTGGAGAAGCAAAACGAGCTCCTCACGGAAGCAAAAATATCAATGTCTGAGGAATTGCACCAACTGAAGGTCGAAGAAGAAATGCTGATGCGTAAGTTTTATGAGATAATGTCAGCTCATGGTAAACTTAAAAAGAATGAAGGTTGTGGTACAGTTTCAGATGACGGTGAAATTGGACGAGGACCGTTGATGACTTCAAATTCTGTTTTCACATTGTCGAATGAATGTGTATGTAGTATTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

94

Amino Acids

10.54

Weight (kDa)

5.06

Isoelectric Point (pI)

39.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37608 AT4G37608
fragaria_vesca	FvH4_1g17450 FvH4_1g17450 FvH4_1g17450 FvH4_1g17450 FvH4_1g17450 FvH4_5g27530
malus_domestica	MD02G1183800.v1.1 MD15G1295400.v1.1
prunus_persica	Prupe.6G222400_v2.0.a1 Prupe.6G222400_v2.0.a1 Prupe.6G222400_v2.0.a1 Prupe.6G222400_v2.0.a1 Prupe.6G222400_v2.0.a1 Prupe.6G222400_v2.0.a1 Prupe.6G222400_v2.0.a1
pyrus_communis	pycom15g25830
rosa_chinensis	RchiOBHm_Chr5g0053551 RchiOBHm_Chr5g0053611
rosa_multiflora	Rmu_sc0010274.1_g000016
rosa_roxburghii	Rroxscaffold_2G00136080
rosa_rugosa	Rorug02G0146200 Rorug02G0146300 Rorug02G0146400 Rorug02G0146500 Rorug02G0146600.1 Rorug02G0146700
rosa_samantha	Rh2AG196000 Rh2BG208400 Rh2CG201100 Rh2DG203500 Rh5AG351800 Rh5AG352200 Rh7BG220400
rosa_wichuraiana	Rw2G015510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	235
AcuI	CTGAAG	1 cut(s)	122
AfaI	GTAC	1 cut(s)	187
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgsI	TTSAA	3 cut(s)	31, 234, 278
AluBI	AGCT	2 cut(s)	55, 152
AluI	AGCT	2 cut(s)	55, 152
Alw21I	GWGCWC	1 cut(s)	57
ApoI	RAATTY	1 cut(s)	235
AspS9I	GGNCC	2 cut(s)	4, 218
AsuHPI	GGTGA	1 cut(s)	215
AvaII	GGWCC	2 cut(s)	4, 218
BanII	GRGCYC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	57
BfaI	CTAG	1 cut(s)	9
Bme18I	GGWCC	2 cut(s)	4, 218
BmgT120I	GGNCC	2 cut(s)	4, 218
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	114
BpmI	CTGGAG	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse1I	ACTGG	1 cut(s)	22
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	22
BseRI	GAGGAG	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	57
BspCNI	CTCAG	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	6
BsrI	ACTGG	1 cut(s)	22
Bst4CI	ACNGT	3 cut(s)	190, 203, 222
BstDEI	CTNAG	1 cut(s)	84
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	15
Cfr13I	GGNCC	2 cut(s)	4, 218
Csp6I	GTAC	1 cut(s)	186
CviAII	CATG	1 cut(s)	155
CviJI	RGCY	2 cut(s)	55, 152
CviKI_1	RGCY	2 cut(s)	55, 152
CviQI	GTAC	1 cut(s)	186
DdeI	CTNAG	1 cut(s)	84
Ecl136II	GAGCTC	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	57
Eco47I	GGWCC	2 cut(s)	4, 218
Eco53kI	GAGCTC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	122
EcoICRI	GAGCTC	1 cut(s)	55
EcoT38I	GRGCYC	1 cut(s)	57
FaeI	CATG	1 cut(s)	158
FaiI	YATR	3 cut(s)	138, 156, 268
FatI	CATG	1 cut(s)	154
FriOI	GRGCYC	1 cut(s)	57
FspBI	CTAG	1 cut(s)	9
GsuI	CTGGAG	1 cut(s)	39
Hin1II	CATG	1 cut(s)	158
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	2 cut(s)	85, 196
Hpy8I	GTNNAC	1 cut(s)	161
HpyAV	CCTTC	2 cut(s)	97, 170
HpyCH4III	ACNGT	3 cut(s)	190, 203, 222
HpyCH4V	TGCA	1 cut(s)	94
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpyF3I	CTNAG	1 cut(s)	84
Hsp92II	CATG	1 cut(s)	158
LmnI	GCTCC	1 cut(s)	60
LpnPI	CCDG	1 cut(s)	3
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	1 cut(s)	9
MboII	GAAGA	2 cut(s)	122, 125
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	3 cut(s)	89, 207, 235
MnlI	CCTC	3 cut(s)	68, 79, 209
MseI	TTAA	1 cut(s)	165
MwoI	GCNNNNNNNGC	1 cut(s)	52
NlaIII	CATG	1 cut(s)	158
NlaIV	GGNNCC	1 cut(s)	6
Psp124BI	GAGCTC	1 cut(s)	57
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	4, 218
RsaI	GTAC	1 cut(s)	187
RsaNI	GTAC	1 cut(s)	186
SacI	GAGCTC	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	165
Sau96I	GGNCC	2 cut(s)	4, 218
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	4 cut(s)	57, 108, 154, 181
SfaNI	GCATC	1 cut(s)	114
SgeI	CNNG	6 cut(s)	21, 30, 64, 73, 167, 227
SinI	GGWCC	2 cut(s)	4, 218
Sse9I	AATT	3 cut(s)	89, 207, 235
SspMI	CTAG	1 cut(s)	9
SstI	GAGCTC	1 cut(s)	57
TaaI	ACNGT	3 cut(s)	190, 203, 222
TaqI	TCGA	2 cut(s)	108, 254
TasI	AATT	3 cut(s)	89, 207, 235
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	1 cut(s)	22
TspDTI	ATGAA	2 cut(s)	189, 273
TspGWI	ACGGA	1 cut(s)	77
TspRI	CASTG	1 cut(s)	22
VpaK11BI	GGWCC	2 cut(s)	4, 218
XapI	RAATTY	1 cut(s)	235
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.