FvH4_1g17750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0012316
Physical Location & Seq
Reverse (-)
10325831 .. 10328613
2783 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g17750.t2

Sequence Viewer

Length: 1245 bp
ATGGGATTTGCAATTTTCCTAACCTTCAAGCATCCAAACGTTGGGAATTGGCGCATTAAACACTTTCTTGATCGTCACTCTATCCTAATGTTCTTGTTGGTTCTCCTCTTTGCCCTGCTAGCCATAGTTGCATCAAGTTTGGCGCTGGCAGTAAATCGCAGCTCTATGAAAAGAGCTGAAAATTTGAAGAGAACCATATTCAACCTAGCTGAAAATGCTCGCCAAACCATCAGCAAAGTAACAAAAGCAATGAAAAAATTGGAATACATATTACTCCCTTATGACAAAGGCATGTCTTTGAGCTTGAACAAAACATCACATCAACTAGGGAAAGGATTGCGTTCGATTCAAAAATTGGCTGACAACAACAGCCATACACTTAACCAGGCAATTCAAGCCCCATACATAGCTCATCTTGTGATTGTAACGATCAACTTGGTGCTACTCGTTGTGGCATTAGTCCTTCTCTTGCTGCATTGGCACCCAGGATTCGTCACTGTAATCATTCTGTGCTGGATATTAACAAGTCTAGTTTGGATATTGGCTGGTTTAGATTTCTTCCTTCACAACTTTGCAGATGATTCATGTTCAGCCCTAATGGAGTTCGAACGAAATGATAACAACAATACTGTAAGCTCAATCCTGCCATGCTTGGATCCAAAAAACTCAGATGCTCTGTTGGCTGAAACTGGCTCCACTATATATAATTTCATAGATATGTTGAATTCTAAAGTAGTAGAATTTTCTAGGTTGCTTGGAATGGAAGAACAAAATGCTCATGATTTTGAACTTCTCCGTGTATGCAATCCTTTCTCCGGAGGACCTAAATTCAGCTATGAACCAAACAGTTGCCAAAATAGTCACATGACAATCGAAAAACTACCTGATGCTATTGCAGGGGTAACCTGTTACGATGACCAGGACAAGGAGGCATGCATGAGAAGTGGAAGATTCCTTCCCCATACCTATTACAATATGGCCAGTGCTTACAGCCGATCCATCCAAGAATTTCTGAATCTATATCCAGCTCTGCAGAGCCTAGCCTACTGCACATTTGTCAAGGATGGGATTTCTGAGGTCGTCAGATATCAATGCAGGCCAATTAAGCTTGCGTTTCGACTGCTATGGGCGTCCACCCTCTCCCTTGCCATTTTCATGGTGTTCTTAGTGTTACTTCTGGTGGCAAGAGCTTTACAAGAGAAGGGTAAAGACTTCACTATATTAACCAACACCATTCCCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

415

Amino Acids

46.7

Weight (kDa)

8.63

Isoelectric Point (pI)

35.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67550
fragaria_vesca FvH4_1g17730 FvH4_1g17750 FvH4_1g17750
malus_domestica MD02G1186300.v1.1
prunus_persica Prupe.6G220300_v2.0.a1 Prupe.6G220300_v2.0.a1
pyrus_communis pycom02g15130 pycom02g15140
rosa_chinensis RchiOBHm_Chr2g0108061
rosa_laevigata RLG00000017637
rosa_roxburghii Rroxscaffold_2G00135650
rosa_rugosa Rorug02G0149900 Rorug02G0150000
rosa_samantha Rh2AG199200 Rh2BG212000 Rh2CG203800 Rh2DG206800
rosa_wichuraiana Rw2G015810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 480
AccB7I CCANNNNNTGG 1 cut(s) 41
AccIII TCCGGA 1 cut(s) 815
AclI AACGTT 1 cut(s) 39
AclWI GGATC 3 cut(s) 650, 663, 990
AcoI YGGCCR 1 cut(s) 978
AcsI RAATTY 5 cut(s) 181, 724, 740, 827, 1007
AcyI GRCGYC 1 cut(s) 1130
AfiI CCNNNNNNNGG 3 cut(s) 41, 815, 925
AgsI TTSAA 8 cut(s) 28, 187, 202, 307, 350, 395, 724, 788
AjnI CCWGG 3 cut(s) 384, 484, 918
AlwI GGATC 3 cut(s) 650, 663, 990
Aor13HI TCCGGA 1 cut(s) 815
AoxI GGCC 2 cut(s) 978, 1097
ApeKI GCWGC 2 cut(s) 159, 472
ApoI RAATTY 5 cut(s) 181, 724, 740, 827, 1007
AspLEI GCGC 2 cut(s) 54, 145
AspS9I GGNCC 1 cut(s) 821
AsuII TTCGAA 1 cut(s) 606
AsuNHI GCTAGC 1 cut(s) 118
AvaII GGWCC 1 cut(s) 821
BalI TGGCCA 1 cut(s) 980
BamHI GGATCC 1 cut(s) 655
BanI GGYRCC 1 cut(s) 480
BbvI GCAGC 2 cut(s) 171, 459
BccI CCATC 3 cut(s) 236, 1007, 1058
BciT130I CCWGG 3 cut(s) 386, 486, 920
BfaI CTAG 6 cut(s) 119, 206, 326, 530, 747, 1040
BfmI CTRYAG 1 cut(s) 1031
BfoI RGCGCY 1 cut(s) 146
BisI GCNGC 2 cut(s) 160, 473
BlsI GCNGC 2 cut(s) 161, 474
Bme1390I CCNGG 3 cut(s) 386, 486, 920
Bme18I GGWCC 1 cut(s) 821
BmgT120I GGNCC 1 cut(s) 821
BmiI GGNNCC 3 cut(s) 482, 657, 694
BmrFI CCNGG 3 cut(s) 386, 486, 920
BmsI GCATC 4 cut(s) 40, 140, 661, 877
BmtI GCTAGC 1 cut(s) 122
Bpu14I TTCGAA 1 cut(s) 606
BsaHI GRCGYC 1 cut(s) 1130
BsaJI CCNNGG 1 cut(s) 484
BsaWI WCCGGW 1 cut(s) 815
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 815, 925
Bse1I ACTGG 2 cut(s) 694, 981
Bse3DI GCAATG 1 cut(s) 255
BseAI TCCGGA 1 cut(s) 815
BseBI CCWGG 3 cut(s) 386, 486, 920
BseDI CCNNGG 1 cut(s) 484
BseGI GGATG 3 cut(s) 31, 999, 1069
BseLI CCNNNNNNNGG 3 cut(s) 41, 815, 925
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 2 cut(s) 681, 1065
BseNI ACTGG 2 cut(s) 694, 981
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 2 cut(s) 171, 459
BsgI GTGCAG 1 cut(s) 1033
BshFI GGCC 2 cut(s) 980, 1099
BshNI GGYRCC 1 cut(s) 480
BsiSI CCGG 1 cut(s) 816
BslI CCNNNNNNNGG 3 cut(s) 41, 815, 925
BsnI GGCC 2 cut(s) 980, 1099
Bsp119I TTCGAA 1 cut(s) 606
Bsp13I TCCGGA 1 cut(s) 815
Bsp143I GATC 4 cut(s) 70, 429, 655, 995
BspANI GGCC 2 cut(s) 980, 1099
BspCNI CTCAG 2 cut(s) 680, 1066
BspEI TCCGGA 1 cut(s) 815
BspHI TCATGA 1 cut(s) 778
BspLI GGNNCC 3 cut(s) 482, 657, 694
BspMAI CTGCAG 1 cut(s) 1035
BspOI GCTAGC 1 cut(s) 122
BspPI GGATC 3 cut(s) 650, 663, 990
BspT104I TTCGAA 1 cut(s) 606
BspT107I GGYRCC 1 cut(s) 480
BsrDI GCAATG 1 cut(s) 255
BsrI ACTGG 2 cut(s) 694, 981
BssECI CCNNGG 1 cut(s) 484
BssMI GATC 4 cut(s) 70, 429, 655, 995
BssNI GRCGYC 1 cut(s) 1130
Bst2UI CCWGG 3 cut(s) 386, 486, 920
Bst4CI ACNGT 3 cut(s) 499, 631, 848
Bst6I CTCTTC 1 cut(s) 182
BstACI GRCGYC 1 cut(s) 1130
BstBI TTCGAA 1 cut(s) 606
BstC8I GCNNGC 6 cut(s) 120, 147, 220, 934, 1097, 1110
BstDEI CTNAG 3 cut(s) 667, 1074, 1165
BstEII GGTNACC 1 cut(s) 901
BstF5I GGATG 3 cut(s) 31, 999, 1069
BstH2I RGCGCY 1 cut(s) 146
BstHHI GCGC 2 cut(s) 54, 145
BstKTI GATC 4 cut(s) 73, 432, 658, 998
BstMBI GATC 4 cut(s) 70, 429, 655, 995
BstMWI GCNNNNNNNGC 7 cut(s) 119, 128, 215, 395, 478, 680, 1105
BstNI CCWGG 3 cut(s) 386, 486, 920
BstNSI RCATGY 2 cut(s) 295, 936
BstPI GGTNACC 1 cut(s) 901
BstSCI CCNGG 3 cut(s) 384, 484, 918
BstSFI CTRYAG 1 cut(s) 1031
BstV1I GCAGC 2 cut(s) 171, 459
BstX2I RGATCY 1 cut(s) 655
BstXI CCANNNNNNTGG 1 cut(s) 1156
BstYI RGATCY 1 cut(s) 655
BsuRI GGCC 2 cut(s) 980, 1099
BtsCI GGATG 3 cut(s) 31, 999, 1069
BtsIMutI CAGTG 2 cut(s) 495, 988
Cac8I GCNNGC 6 cut(s) 120, 147, 220, 934, 1097, 1110
CciI TCATGA 1 cut(s) 778
CfoI GCGC 2 cut(s) 54, 145
Cfr13I GGNCC 1 cut(s) 821
CseI GACGC 1 cut(s) 1119
CviAII CATG 8 cut(s) 292, 585, 648, 779, 865, 933, 937, 1156
DdeI CTNAG 3 cut(s) 667, 1074, 1165
DpnI GATC 4 cut(s) 72, 431, 657, 997
DpnII GATC 4 cut(s) 70, 429, 655, 995
EaeI YGGCCR 1 cut(s) 978
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
Eco32I GATATC 1 cut(s) 1088
Eco47I GGWCC 1 cut(s) 821
Eco91I GGTNACC 1 cut(s) 901
EcoO109I RGGNCCY 1 cut(s) 821
EcoO65I GGTNACC 1 cut(s) 901
EcoRI GAATTC 1 cut(s) 724
EcoRII CCWGG 3 cut(s) 384, 484, 918
EcoRV GATATC 1 cut(s) 1088
EcoT22I ATGCAT 1 cut(s) 938
FaeI CATG 8 cut(s) 295, 588, 651, 782, 868, 936, 940, 1159
FatI CATG 8 cut(s) 291, 584, 647, 778, 864, 932, 936, 1155
Fnu4HI GCNGC 2 cut(s) 160, 473
FokI GGATG 3 cut(s) 18, 986, 1076
Fsp4HI GCNGC 2 cut(s) 160, 473
FspBI CTAG 6 cut(s) 119, 206, 326, 530, 747, 1040
GlaI GCGC 2 cut(s) 53, 144
GluI GCNGC 2 cut(s) 160, 473
HaeII RGCGCY 1 cut(s) 146
HaeIII GGCC 2 cut(s) 980, 1099
HapII CCGG 1 cut(s) 816
HgaI GACGC 1 cut(s) 1119
HhaI GCGC 2 cut(s) 54, 145
Hin1I GRCGYC 1 cut(s) 1130
Hin1II CATG 8 cut(s) 295, 588, 651, 782, 868, 936, 940, 1159
Hin6I GCGC 2 cut(s) 52, 143
HinP1I GCGC 2 cut(s) 52, 143
HindIII AAGCTT 1 cut(s) 1106
HinfI GANTC 5 cut(s) 346, 489, 581, 951, 1015
HpaII CCGG 1 cut(s) 816
Hpy166II GTNNAC 1 cut(s) 1134
Hpy188I TCNGA 4 cut(s) 670, 1014, 1075, 1085
Hpy188III TCNNGA 3 cut(s) 68, 779, 816
Hpy8I GTNNAC 1 cut(s) 1134
HpyAV CCTTC 5 cut(s) 34, 473, 572, 965, 1195
HpyCH4III ACNGT 3 cut(s) 499, 631, 848
HpyCH4IV ACGT 1 cut(s) 39
HpyF10VI GCNNNNNNNGC 7 cut(s) 119, 128, 215, 395, 478, 680, 1105
HpyF3I CTNAG 3 cut(s) 667, 1074, 1165
HpySE526I ACGT 1 cut(s) 39
Hsp92I GRCGYC 1 cut(s) 1130
Hsp92II CATG 8 cut(s) 295, 588, 651, 782, 868, 936, 940, 1159
HspAI GCGC 2 cut(s) 52, 143
Kpn2I TCCGGA 1 cut(s) 815
Kzo9I GATC 4 cut(s) 70, 429, 655, 995
LmnI GCTCC 1 cut(s) 698
Lsp1109I GCAGC 2 cut(s) 171, 459
LweI GCATC 4 cut(s) 40, 140, 661, 877
MaeI CTAG 6 cut(s) 119, 206, 326, 530, 747, 1040
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 8 cut(s) 74, 238, 424, 493, 860, 901, 908, 1170
MalI GATC 4 cut(s) 72, 431, 657, 997
MboI GATC 4 cut(s) 70, 429, 655, 995
MboII GAAGA 4 cut(s) 199, 550, 776, 960
MflI RGATCY 1 cut(s) 655
MlsI TGGCCA 1 cut(s) 980
MluNI TGGCCA 1 cut(s) 980
MnlI CCTC 5 cut(s) 116, 812, 922, 1069, 1148
Mox20I TGGCCA 1 cut(s) 980
Mph1103I ATGCAT 1 cut(s) 938
MroI TCCGGA 1 cut(s) 815
MscI TGGCCA 1 cut(s) 980
MseI TTAA 5 cut(s) 57, 381, 521, 1104, 1223
MslI CAYNNNNRTG 2 cut(s) 716, 1154
Msp20I TGGCCA 1 cut(s) 980
MspI CCGG 1 cut(s) 816
MspR9I CCNGG 3 cut(s) 386, 486, 920
MvaI CCWGG 3 cut(s) 386, 486, 920
MwoI GCNNNNNNNGC 7 cut(s) 119, 128, 215, 395, 478, 680, 1105
NdeII GATC 4 cut(s) 70, 429, 655, 995
NheI GCTAGC 1 cut(s) 118
NlaIII CATG 8 cut(s) 295, 588, 651, 782, 868, 936, 940, 1159
NlaIV GGNNCC 3 cut(s) 482, 657, 694
NmuCI GTSAC 3 cut(s) 74, 493, 860
NsiI ATGCAT 1 cut(s) 938
NspI RCATGY 2 cut(s) 295, 936
NspV TTCGAA 1 cut(s) 606
PaeI GCATGC 1 cut(s) 936
PagI TCATGA 1 cut(s) 778
PfeI GAWTC 5 cut(s) 346, 489, 581, 951, 1015
PflMI CCANNNNNTGG 1 cut(s) 41
PkrI GCNGC 2 cut(s) 161, 474
PpuMI RGGWCCY 1 cut(s) 821
Psp1406I AACGTT 1 cut(s) 39
Psp5II RGGWCCY 1 cut(s) 821
Psp6I CCWGG 3 cut(s) 384, 484, 918
PspEI GGTNACC 1 cut(s) 901
PspGI CCWGG 3 cut(s) 384, 484, 918
PspN4I GGNNCC 3 cut(s) 482, 657, 694
PspPI GGNCC 1 cut(s) 821
PspPPI RGGWCCY 1 cut(s) 821
PstI CTGCAG 1 cut(s) 1035
PsuI RGATCY 1 cut(s) 655
RseI CAYNNNNRTG 2 cut(s) 716, 1154
SaqAI TTAA 5 cut(s) 57, 381, 521, 1104, 1223
SatI GCNGC 2 cut(s) 160, 473
Sau3AI GATC 4 cut(s) 70, 429, 655, 995
Sau96I GGNCC 1 cut(s) 821
ScrFI CCNGG 3 cut(s) 386, 486, 920
SfaNI GCATC 4 cut(s) 40, 140, 661, 877
SfcI CTRYAG 1 cut(s) 1031
SfuI TTCGAA 1 cut(s) 606
SinI GGWCC 1 cut(s) 821
SmiMI CAYNNNNRTG 2 cut(s) 716, 1154
SphI GCATGC 1 cut(s) 936
SspMI CTAG 6 cut(s) 119, 206, 326, 530, 747, 1040
StyD4I CCNGG 3 cut(s) 384, 484, 918
TaaI ACNGT 3 cut(s) 499, 631, 848
TaiI ACGT 1 cut(s) 42
TaqI TCGA 4 cut(s) 344, 606, 873, 1117
TfiI GAWTC 5 cut(s) 346, 489, 581, 951, 1015
Tru1I TTAA 5 cut(s) 57, 381, 521, 1104, 1223
Tru9I TTAA 5 cut(s) 57, 381, 521, 1104, 1223
TscAI CASTG 2 cut(s) 502, 988
TseFI GTSAC 3 cut(s) 74, 493, 860
TseI GCWGC 2 cut(s) 159, 472
Tsp45I GTSAC 3 cut(s) 74, 493, 860
TspDTI ATGAA 6 cut(s) 182, 266, 573, 700, 852, 1144
TspGWI ACGGA 1 cut(s) 785
TspRI CASTG 2 cut(s) 502, 988
Van91I CCANNNNNTGG 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 821
XapI RAATTY 5 cut(s) 181, 724, 740, 827, 1007
XceI RCATGY 2 cut(s) 295, 936
XspI CTAG 6 cut(s) 119, 206, 326, 530, 747, 1040
Zsp2I ATGCAT 1 cut(s) 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.