pycom02g15140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0012316
Physical Location & Seq
Reverse (-)
11835745 .. 11837366
1622 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g15140.3

Sequence Viewer

Length: 648 bp
ATGGCTATCTCGAACGGGGTTCTTGTACCCTTCATCGTCTTCTTGGTTTCAACGTTTGTGTTTTCCCCGGCTAGGGTGGTGTTTGGGGAGCAGAGTGGCTTGAACAGACCCGATCCCTTGCGCCACTTAAAATCCTACAATGGAGGCTACGACGTCACAAATAAACATTACTGGGCTTCTACGGCATTTACAGGAGTCCATGGGTACGTGATTGCAGGAGTTTGGTTGCTGTGTGGCCTGGTATTTACGATTTGCATAGCCTTCTTGAAGAAGCCGAGCATTAGGAGCACTTGCCCCATTAAACACTTCTTGGACCGTAACTTCATCTTAATGTTCATACTCCTCCTCCTCTTTACAATTCTAGCCATAGTGGCTTCAAGCTTGGTGCTGGTAGAAAATGAAAGATCAATGAAGAGAACAGAAAAAGTGAAGGGAGCCCTAATGGGGGTGGCTCAAAATGCTCGACGAACCATCCGAAAAGTAACAACCGCAATGGGTAATATGCAGTACCTTTTGCTGCCTTATGATCCAGCCTTGGCAAGCAGTTTGAATGTCACATCCCGTCAGCTTGGAAAAGACTCGCAAGATATTCAACGTTTTGTTGACAAAAATGGGCATACAATTGAGCGGATTATTCAAACCCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

24.01

Weight (kDa)

9.97

Isoelectric Point (pI)

36.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67550
fragaria_vesca FvH4_1g17730 FvH4_1g17750 FvH4_1g17750
malus_domestica MD02G1186300.v1.1
prunus_persica Prupe.6G220300_v2.0.a1 Prupe.6G220300_v2.0.a1
pyrus_communis pycom02g15130 pycom02g15140
rosa_chinensis RchiOBHm_Chr2g0108061
rosa_laevigata RLG00000017637
rosa_roxburghii Rroxscaffold_2G00135650
rosa_rugosa Rorug02G0149900 Rorug02G0150000
rosa_samantha Rh2AG199200 Rh2BG212000 Rh2CG203800 Rh2DG206800
rosa_wichuraiana Rw2G015810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 156
AccBSI CCGCTC 1 cut(s) 628
AciI CCGC 2 cut(s) 489, 628
AclI AACGTT 2 cut(s) 53, 595
AclWI GGATC 2 cut(s) 107, 521
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 3 cut(s) 27, 206, 509
AfiI CCNNNNNNNGG 4 cut(s) 72, 73, 444, 445
AgsI TTSAA 7 cut(s) 51, 103, 268, 378, 550, 593, 638
AjnI CCWGG 1 cut(s) 237
AluBI AGCT 2 cut(s) 381, 568
AluI AGCT 2 cut(s) 381, 568
Alw21I GWGCWC 1 cut(s) 290
AlwI GGATC 2 cut(s) 107, 521
AoxI GGCC 1 cut(s) 235
ApeKI GCWGC 1 cut(s) 517
AspLEI GCGC 1 cut(s) 123
AspS9I GGNCC 1 cut(s) 313
AsuC2I CCSGG 1 cut(s) 68
AvaII GGWCC 1 cut(s) 313
BanII GRGCYC 1 cut(s) 439
BbsI GAAGAC 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 290
BbvI GCAGC 1 cut(s) 504
BccI CCATC 1 cut(s) 479
BceAI ACGGC 1 cut(s) 198
BciT130I CCWGG 1 cut(s) 239
BcnI CCSGG 1 cut(s) 68
BfaI CTAG 2 cut(s) 72, 362
BglI GCCNNNNNGGC 1 cut(s) 371
BisI GCNGC 1 cut(s) 518
BlsI GCNGC 1 cut(s) 519
Bme1390I CCNGG 2 cut(s) 68, 239
Bme18I GGWCC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 313
BmiI GGNNCC 1 cut(s) 436
BmrFI CCNGG 2 cut(s) 68, 239
BmrI ACTGGG 1 cut(s) 181
BmuI ACTGGG 1 cut(s) 181
BpiI GAAGAC 1 cut(s) 31
BpuMI CCSGG 1 cut(s) 68
BsaAI YACGTR 1 cut(s) 208
BsaHI GRCGYC 1 cut(s) 153
BsaJI CCNNGG 3 cut(s) 66, 199, 534
BsaXI ACNNNNNCTCC 2 cut(s) 330, 360
Bsc4I CCNNNNNNNGG 4 cut(s) 72, 73, 444, 445
Bse1I ACTGG 1 cut(s) 176
Bse3DI GCAATG 1 cut(s) 498
BseBI CCWGG 1 cut(s) 239
BseDI CCNNGG 3 cut(s) 66, 199, 534
BseGI GGATG 2 cut(s) 471, 557
BseLI CCNNNNNNNGG 4 cut(s) 72, 73, 444, 445
BseMI GCAATG 1 cut(s) 498
BseNI ACTGG 1 cut(s) 176
BseRI GAGGAG 3 cut(s) 332, 335, 338
BseXI GCAGC 1 cut(s) 504
BshFI GGCC 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 290
BsiSI CCGG 1 cut(s) 68
BslI CCNNNNNNNGG 4 cut(s) 72, 73, 444, 445
BsnI GGCC 1 cut(s) 237
Bsp1286I GDGCHC 2 cut(s) 290, 439
Bsp143I GATC 3 cut(s) 112, 404, 526
Bsp19I CCATGG 1 cut(s) 199
BspACI CCGC 2 cut(s) 489, 628
BspANI GGCC 1 cut(s) 237
BspLI GGNNCC 1 cut(s) 436
BspPI GGATC 2 cut(s) 107, 521
BsrBI CCGCTC 1 cut(s) 628
BsrDI GCAATG 1 cut(s) 498
BsrI ACTGG 1 cut(s) 176
BssECI CCNNGG 3 cut(s) 66, 199, 534
BssMI GATC 3 cut(s) 112, 404, 526
BssNI GRCGYC 1 cut(s) 153
BssT1I CCWWGG 2 cut(s) 199, 534
Bst2UI CCWGG 1 cut(s) 239
Bst4CI ACNGT 1 cut(s) 317
Bst6I CTCTTC 1 cut(s) 407
BstACI GRCGYC 1 cut(s) 153
BstBAI YACGTR 1 cut(s) 208
BstC8I GCNNGC 1 cut(s) 541
BstDSI CCRYGG 1 cut(s) 199
BstF5I GGATG 2 cut(s) 471, 557
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 3 cut(s) 115, 407, 529
BstMBI GATC 3 cut(s) 112, 404, 526
BstMWI GCNNNNNNNGC 4 cut(s) 182, 285, 371, 458
BstNI CCWGG 1 cut(s) 239
BstSCI CCNGG 2 cut(s) 66, 237
BstV1I GCAGC 1 cut(s) 504
BstV2I GAAGAC 1 cut(s) 31
BsuRI GGCC 1 cut(s) 237
BtgI CCRYGG 1 cut(s) 199
BtsCI GGATG 2 cut(s) 471, 557
Cac8I GCNNGC 1 cut(s) 541
CfoI GCGC 1 cut(s) 123
Cfr13I GGNCC 1 cut(s) 313
Csp6I GTAC 3 cut(s) 26, 205, 508
CviAII CATG 1 cut(s) 200
CviQI GTAC 3 cut(s) 26, 205, 508
DpnI GATC 3 cut(s) 114, 406, 528
DpnII GATC 3 cut(s) 112, 404, 526
Eam1104I CTCTTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 407
Eco130I CCWWGG 2 cut(s) 199, 534
Eco24I GRGCYC 1 cut(s) 439
Eco47I GGWCC 1 cut(s) 313
EcoRII CCWGG 1 cut(s) 237
EcoT14I CCWWGG 2 cut(s) 199, 534
EcoT38I GRGCYC 1 cut(s) 439
ErhI CCWWGG 2 cut(s) 199, 534
FaeI CATG 1 cut(s) 203
FaiI YATR 7 cut(s) 201, 257, 338, 368, 503, 525, 618
FatI CATG 1 cut(s) 199
Fnu4HI GCNGC 1 cut(s) 518
FokI GGATG 2 cut(s) 458, 544
FriOI GRGCYC 1 cut(s) 439
Fsp4HI GCNGC 1 cut(s) 518
FspBI CTAG 2 cut(s) 72, 362
GlaI GCGC 1 cut(s) 122
GluI GCNGC 1 cut(s) 518
HaeIII GGCC 1 cut(s) 237
HapII CCGG 1 cut(s) 68
HhaI GCGC 1 cut(s) 123
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 1 cut(s) 203
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HincII GTYRAC 1 cut(s) 604
HindII GTYRAC 1 cut(s) 604
HindIII AAGCTT 1 cut(s) 379
HinfI GANTC 2 cut(s) 195, 578
HpaII CCGG 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 604
Hpy188I TCNGA 1 cut(s) 476
Hpy188III TCNNGA 2 cut(s) 10, 265
Hpy8I GTNNAC 1 cut(s) 604
Hpy99I CGWCG 2 cut(s) 155, 468
HpyAV CCTTC 3 cut(s) 40, 271, 424
HpyCH4III ACNGT 1 cut(s) 317
HpyCH4IV ACGT 4 cut(s) 53, 153, 207, 595
HpyCH4V TGCA 3 cut(s) 215, 255, 505
HpyF10VI GCNNNNNNNGC 4 cut(s) 182, 285, 371, 458
HpySE526I ACGT 4 cut(s) 53, 153, 207, 595
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 1 cut(s) 203
HspAI GCGC 1 cut(s) 121
Kzo9I GATC 3 cut(s) 112, 404, 526
LmnI GCTCC 3 cut(s) 88, 285, 434
LpnPI CCDG 8 cut(s) 81, 157, 177, 201, 224, 251, 374, 543
Lsp1109I GCAGC 1 cut(s) 504
MaeI CTAG 2 cut(s) 72, 362
MaeII ACGT 4 cut(s) 53, 153, 207, 595
MaeIII GTNAC 4 cut(s) 154, 317, 481, 553
MalI GATC 3 cut(s) 114, 406, 528
MbiI CCGCTC 1 cut(s) 628
MboI GATC 3 cut(s) 112, 404, 526
MboII GAAGA 3 cut(s) 31, 280, 424
MfeI CAATTG 1 cut(s) 621
MhlI GDGCHC 2 cut(s) 290, 439
MluCI AATT 2 cut(s) 357, 621
MlyI GAGTC 2 cut(s) 204, 572
MnlI CCTC 4 cut(s) 137, 353, 356, 359
MseI TTAA 3 cut(s) 128, 300, 329
MslI CAYNNNNRTG 1 cut(s) 329
MspI CCGG 1 cut(s) 68
MspR9I CCNGG 2 cut(s) 68, 239
MunI CAATTG 1 cut(s) 621
MvaI CCWGG 1 cut(s) 239
MwoI GCNNNNNNNGC 4 cut(s) 182, 285, 371, 458
NciI CCSGG 1 cut(s) 68
NcoI CCATGG 1 cut(s) 199
NdeII GATC 3 cut(s) 112, 404, 526
NlaIII CATG 1 cut(s) 203
NlaIV GGNNCC 1 cut(s) 436
NmeAIII GCCGAG 1 cut(s) 300
NmuCI GTSAC 2 cut(s) 154, 553
PcsI WCGNNNNNNNCGW 1 cut(s) 472
PkrI GCNGC 1 cut(s) 519
PleI GAGTC 2 cut(s) 203, 572
PpsI GAGTC 2 cut(s) 203, 572
Ppu21I YACGTR 1 cut(s) 208
Psp1406I AACGTT 2 cut(s) 53, 595
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 1 cut(s) 436
PspPI GGNCC 1 cut(s) 313
RsaI GTAC 3 cut(s) 27, 206, 509
RsaNI GTAC 3 cut(s) 26, 205, 508
RseI CAYNNNNRTG 1 cut(s) 329
SaqAI TTAA 3 cut(s) 128, 300, 329
SatI GCNGC 1 cut(s) 518
Sau3AI GATC 3 cut(s) 112, 404, 526
Sau96I GGNCC 1 cut(s) 313
SchI GAGTC 2 cut(s) 204, 572
ScrFI CCNGG 2 cut(s) 68, 239
SduI GDGCHC 2 cut(s) 290, 439
SetI ASST 7 cut(s) 56, 156, 210, 383, 513, 570, 598
SinI GGWCC 1 cut(s) 313
SmiMI CAYNNNNRTG 1 cut(s) 329
Sse9I AATT 2 cut(s) 357, 621
SsiI CCGC 2 cut(s) 489, 628
SspMI CTAG 2 cut(s) 72, 362
StyD4I CCNGG 2 cut(s) 66, 237
StyI CCWWGG 2 cut(s) 199, 534
TaaI ACNGT 1 cut(s) 317
TaiI ACGT 4 cut(s) 56, 156, 210, 598
TaqI TCGA 2 cut(s) 11, 463
TasI AATT 2 cut(s) 357, 621
Tru1I TTAA 3 cut(s) 128, 300, 329
Tru9I TTAA 3 cut(s) 128, 300, 329
TseFI GTSAC 2 cut(s) 154, 553
TseI GCWGC 1 cut(s) 517
Tsp45I GTSAC 2 cut(s) 154, 553
TspDTI ATGAA 5 cut(s) 22, 313, 325, 414, 425
VpaK11BI GGWCC 1 cut(s) 313
XspI CTAG 2 cut(s) 72, 362
ZraI GACGTC 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.