Rh2CG203800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0012316
Physical Location & Seq
Reverse (-)
19845124 .. 19848874
3751 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG203800.1

Sequence Viewer

Length: 1125 bp
ATGTCTATCCCAAATGGGGTTCTACTACACATCGTTTTCTTCTTGTTCTTGGCATCTTTACTTTCGCCGAAATGGGTTGTGCATGGGGAGAGCAACACGAAGAGACCGGATCCTTTGCGCCACCTAAAGAACTACAATGGAACTTTCAATATTCAAAGCAAGGATTACTGGGCTTCTGCGGCATTTACAGGACTCTATGGGTACATTATCGCGGGAGTTTGGTTGCTATGTGGAATGGGATTTGCAATTTTCCTGACCTTCAAGCATCCAAACACTGGGAATTGGCGCATTAAACACTTTTTGGATCGTCACTCTATCCTAATGTTCTTGTTGGTTCTTCTCTTTACTCTGCTAGCCATAGTTGCATCAAGTTCGGTGCTAGCAGTAAATCACAGCTCTATGAAAGGAGCGGAGAAATTGAAGAGGACCATATTCAGCCTAGCTGAAAGTGCTAGCCAAACCATCAGCAAAGTTACAAAAGTAATGAGAAAAATGGAATACATATTACTCCCTTATGACAAAGGCATTTCTATGAGCTTGAATAAGACATCCCATCAACTTGGAAAAGGATTGCGTTCGATTCAAACATTGGTTGACAACAATAGCCATACTCTTAACCAGGCAATTCAAGCCCCATATATAGCTCATCTTGTGATTGTAACGGTCAACTTGGTGGTACTGGTTGTGGCAATAGTTCTTCTCTTGCTGCATTGGTACCCAGGATTCCTAACTATAGTCATTCTGTGCTGGATATTAACGACTCTGGTGTGGGTCCTGGCTGGATTAGATTTCTTCCTTCACAATTTTGCAGATGATTCATGTTCAGCCCTAGAGGAATTCGAACGGAATGATAACAACAATACTCTAAGCTCAATCCTGCCATGCTTGGATCCGAAAAACTCAGATGCTCTGTTGGCTGAAATTGGCTCTACCATATATAATTTCATAGATAAGTTGAATTCTAAAGTAGTAGAATTTTCTAGGTTGCTTGGAATGAACGAACAAAATGCTGATTTTGCATTTCTACGTGTATGCAATCCTTTCTCTGAAGGACCTAAATTCAGCTATGAACCAGAACGTTGCCTAAATAGTCACATTACAATCGAAAAACTACCAGATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

374

Amino Acids

42.07

Weight (kDa)

8.15

Isoelectric Point (pI)

30.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67550
fragaria_vesca FvH4_1g17730 FvH4_1g17750 FvH4_1g17750
malus_domestica MD02G1186300.v1.1
prunus_persica Prupe.6G220300_v2.0.a1 Prupe.6G220300_v2.0.a1
pyrus_communis pycom02g15130 pycom02g15140
rosa_chinensis RchiOBHm_Chr2g0108061
rosa_laevigata RLG00000017637
rosa_roxburghii Rroxscaffold_2G00135650
rosa_rugosa Rorug02G0149900 Rorug02G0150000
rosa_samantha Rh2AG199200 Rh2BG212000 Rh2CG203800 Rh2DG206800
rosa_wichuraiana Rw2G015810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 714
AccB1I GGYRCC 1 cut(s) 714
AccB7I CCANNNNNTGG 1 cut(s) 275
AccBSI CCGCTC 1 cut(s) 410
AccII CGCG 1 cut(s) 212
AciI CCGC 3 cut(s) 179, 212, 410
AclI AACGTT 1 cut(s) 1078
AclWI GGATC 5 cut(s) 104, 117, 312, 884, 897
AcsI RAATTY 4 cut(s) 836, 958, 974, 1058
AcuI CTGAAG 1 cut(s) 1068
AfaI GTAC 3 cut(s) 203, 678, 716
AfiI CCNNNNNNNGG 2 cut(s) 16, 275
AflIII ACRYGT 1 cut(s) 1027
AgsI TTSAA 8 cut(s) 148, 155, 262, 421, 541, 584, 629, 958
AjnI CCWGG 3 cut(s) 618, 718, 774
AluBI AGCT 6 cut(s) 396, 443, 537, 644, 870, 1065
AluI AGCT 6 cut(s) 396, 443, 537, 644, 870, 1065
Alw26I GTCTC 1 cut(s) 97
AlwI GGATC 5 cut(s) 104, 117, 312, 884, 897
ApeKI GCWGC 1 cut(s) 706
ApoI RAATTY 4 cut(s) 836, 958, 974, 1058
Asp718I GGTACC 1 cut(s) 714
AspLEI GCGC 2 cut(s) 120, 288
AspS9I GGNCC 3 cut(s) 426, 772, 1052
AsuII TTCGAA 1 cut(s) 840
AsuNHI GCTAGC 3 cut(s) 352, 379, 452
AvaII GGWCC 3 cut(s) 426, 772, 1052
BamHI GGATCC 2 cut(s) 109, 889
BanI GGYRCC 1 cut(s) 714
BbvI GCAGC 1 cut(s) 693
BccI CCATC 2 cut(s) 470, 561
BcgI CGANNNNNNTGC 4 cut(s) 354, 388, 989, 1023
BciT130I CCWGG 3 cut(s) 620, 720, 776
BcoDI GTCTC 1 cut(s) 97
BfaI CTAG 6 cut(s) 353, 380, 440, 453, 830, 981
BfmI CTRYAG 1 cut(s) 732
BisI GCNGC 2 cut(s) 180, 707
BlsI GCNGC 2 cut(s) 181, 708
Bme1390I CCNGG 3 cut(s) 620, 720, 776
Bme18I GGWCC 3 cut(s) 426, 772, 1052
BmgT120I GGNCC 3 cut(s) 426, 772, 1052
BmiI GGNNCC 4 cut(s) 111, 716, 773, 891
BmrFI CCNGG 3 cut(s) 620, 720, 776
BmrI ACTGGG 2 cut(s) 178, 285
BmsI GCATC 4 cut(s) 62, 274, 374, 895
BmtI GCTAGC 3 cut(s) 356, 383, 456
BmuI ACTGGG 2 cut(s) 178, 285
Bpu14I TTCGAA 1 cut(s) 840
BsaAI YACGTR 1 cut(s) 1028
BsaI GGTCTC 1 cut(s) 97
BsaJI CCNNGG 1 cut(s) 718
BsaWI WCCGGW 1 cut(s) 106
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 275
Bse1I ACTGG 3 cut(s) 173, 280, 684
BseBI CCWGG 3 cut(s) 620, 720, 776
BseDI CCNNGG 1 cut(s) 718
BseGI GGATG 2 cut(s) 265, 548
BseLI CCNNNNNNNGG 2 cut(s) 16, 275
BseMII CTCAG 1 cut(s) 915
BseNI ACTGG 3 cut(s) 173, 280, 684
BseXI GCAGC 1 cut(s) 693
Bsh1236I CGCG 1 cut(s) 212
BshNI GGYRCC 1 cut(s) 714
BsiSI CCGG 1 cut(s) 107
BslI CCNNNNNNNGG 2 cut(s) 16, 275
BsmAI GTCTC 1 cut(s) 97
Bso31I GGTCTC 1 cut(s) 97
Bsp119I TTCGAA 1 cut(s) 840
Bsp143I GATC 3 cut(s) 109, 304, 889
BspACI CCGC 3 cut(s) 179, 212, 410
BspCNI CTCAG 1 cut(s) 914
BspFNI CGCG 1 cut(s) 212
BspLI GGNNCC 4 cut(s) 111, 716, 773, 891
BspOI GCTAGC 3 cut(s) 356, 383, 456
BspPI GGATC 5 cut(s) 104, 117, 312, 884, 897
BspT104I TTCGAA 1 cut(s) 840
BspT107I GGYRCC 1 cut(s) 714
BspTNI GGTCTC 1 cut(s) 97
BsrBI CCGCTC 1 cut(s) 410
BsrI ACTGG 3 cut(s) 173, 280, 684
BssECI CCNNGG 1 cut(s) 718
BssMI GATC 3 cut(s) 109, 304, 889
Bst2UI CCWGG 3 cut(s) 620, 720, 776
Bst4CI ACNGT 1 cut(s) 664
Bst6I CTCTTC 2 cut(s) 95, 416
BstBAI YACGTR 1 cut(s) 1028
BstBI TTCGAA 1 cut(s) 840
BstC8I GCNNGC 3 cut(s) 354, 381, 454
BstDEI CTNAG 2 cut(s) 866, 901
BstF5I GGATG 2 cut(s) 265, 548
BstFNI CGCG 1 cut(s) 212
BstHHI GCGC 2 cut(s) 120, 288
BstKTI GATC 3 cut(s) 112, 307, 892
BstMAI GTCTC 1 cut(s) 97
BstMBI GATC 3 cut(s) 109, 304, 889
BstMWI GCNNNNNNNGC 6 cut(s) 179, 362, 449, 629, 914, 1016
BstNI CCWGG 3 cut(s) 620, 720, 776
BstSCI CCNGG 3 cut(s) 618, 718, 774
BstSFI CTRYAG 1 cut(s) 732
BstUI CGCG 1 cut(s) 212
BstV1I GCAGC 1 cut(s) 693
BstX2I RGATCY 2 cut(s) 109, 889
BstXI CCANNNNNNTGG 1 cut(s) 560
BstYI RGATCY 2 cut(s) 109, 889
BtsCI GGATG 2 cut(s) 265, 548
BtsIMutI CAGTG 1 cut(s) 273
Cac8I GCNNGC 3 cut(s) 354, 381, 454
CfoI GCGC 2 cut(s) 120, 288
Cfr13I GGNCC 3 cut(s) 426, 772, 1052
Csp6I GTAC 3 cut(s) 202, 677, 715
CviAII CATG 3 cut(s) 83, 819, 882
CviQI GTAC 3 cut(s) 202, 677, 715
DdeI CTNAG 2 cut(s) 866, 901
DpnI GATC 3 cut(s) 111, 306, 891
DpnII GATC 3 cut(s) 109, 304, 889
Eam1104I CTCTTC 2 cut(s) 95, 416
EarI CTCTTC 2 cut(s) 95, 416
Eco31I GGTCTC 1 cut(s) 97
Eco47I GGWCC 3 cut(s) 426, 772, 1052
Eco57I CTGAAG 1 cut(s) 1068
EcoO109I RGGNCCY 2 cut(s) 772, 1052
EcoRI GAATTC 2 cut(s) 836, 958
EcoRII CCWGG 3 cut(s) 618, 718, 774
FaeI CATG 3 cut(s) 86, 822, 885
FatI CATG 3 cut(s) 82, 818, 881
FauI CCCGC 1 cut(s) 205
Fnu4HI GCNGC 2 cut(s) 180, 707
FokI GGATG 2 cut(s) 252, 535
Fsp4HI GCNGC 2 cut(s) 180, 707
FspBI CTAG 6 cut(s) 353, 380, 440, 453, 830, 981
GlaI GCGC 2 cut(s) 119, 287
GluI GCNGC 2 cut(s) 180, 707
HapII CCGG 1 cut(s) 107
HhaI GCGC 2 cut(s) 120, 288
Hin1II CATG 3 cut(s) 86, 822, 885
Hin6I GCGC 2 cut(s) 118, 286
HinP1I GCGC 2 cut(s) 118, 286
HincII GTYRAC 2 cut(s) 595, 667
HindII GTYRAC 2 cut(s) 595, 667
HinfI GANTC 5 cut(s) 192, 580, 723, 760, 815
HpaII CCGG 1 cut(s) 107
Hpy166II GTNNAC 2 cut(s) 595, 667
Hpy188I TCNGA 3 cut(s) 894, 904, 1048
Hpy188III TCNNGA 1 cut(s) 253
Hpy8I GTNNAC 2 cut(s) 595, 667
HpyAV CCTTC 3 cut(s) 268, 806, 1043
HpyCH4III ACNGT 1 cut(s) 664
HpyCH4IV ACGT 2 cut(s) 1027, 1078
HpyCH4V TGCA 7 cut(s) 82, 245, 365, 709, 809, 1019, 1035
HpyF10VI GCNNNNNNNGC 6 cut(s) 179, 362, 449, 629, 914, 1016
HpyF3I CTNAG 2 cut(s) 866, 901
HpySE526I ACGT 2 cut(s) 1027, 1078
Hsp92II CATG 3 cut(s) 86, 822, 885
HspAI GCGC 2 cut(s) 118, 286
KpnI GGTACC 1 cut(s) 718
Kzo9I GATC 3 cut(s) 109, 304, 889
LmnI GCTCC 1 cut(s) 407
Lsp1109I GCAGC 1 cut(s) 693
LweI GCATC 4 cut(s) 62, 274, 374, 895
MaeI CTAG 6 cut(s) 353, 380, 440, 453, 830, 981
MaeII ACGT 2 cut(s) 1027, 1078
MaeIII GTNAC 4 cut(s) 308, 472, 658, 1091
MalI GATC 3 cut(s) 111, 306, 891
MbiI CCGCTC 1 cut(s) 410
MboI GATC 3 cut(s) 109, 304, 889
MboII GAAGA 6 cut(s) 31, 112, 329, 433, 689, 784
MflI RGATCY 2 cut(s) 109, 889
MlyI GAGTC 2 cut(s) 186, 754
MnlI CCTC 2 cut(s) 417, 826
MseI TTAA 3 cut(s) 291, 615, 755
MslI CAYNNNNRTG 1 cut(s) 530
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 3 cut(s) 620, 720, 776
MvaI CCWGG 3 cut(s) 620, 720, 776
MvnI CGCG 1 cut(s) 212
MwoI GCNNNNNNNGC 6 cut(s) 179, 362, 449, 629, 914, 1016
NdeII GATC 3 cut(s) 109, 304, 889
NheI GCTAGC 3 cut(s) 352, 379, 452
NlaIII CATG 3 cut(s) 86, 822, 885
NlaIV GGNNCC 4 cut(s) 111, 716, 773, 891
NmuCI GTSAC 2 cut(s) 308, 1091
NspV TTCGAA 1 cut(s) 840
PfeI GAWTC 3 cut(s) 580, 723, 815
PflMI CCANNNNNTGG 1 cut(s) 275
PkrI GCNGC 2 cut(s) 181, 708
PleI GAGTC 2 cut(s) 186, 754
PpsI GAGTC 2 cut(s) 186, 754
Ppu21I YACGTR 1 cut(s) 1028
PpuMI RGGWCCY 2 cut(s) 772, 1052
Psp1406I AACGTT 1 cut(s) 1078
Psp5II RGGWCCY 2 cut(s) 772, 1052
Psp6I CCWGG 3 cut(s) 618, 718, 774
PspGI CCWGG 3 cut(s) 618, 718, 774
PspN4I GGNNCC 4 cut(s) 111, 716, 773, 891
PspPI GGNCC 3 cut(s) 426, 772, 1052
PspPPI RGGWCCY 2 cut(s) 772, 1052
PsuI RGATCY 2 cut(s) 109, 889
RsaI GTAC 3 cut(s) 203, 678, 716
RsaNI GTAC 3 cut(s) 202, 677, 715
RseI CAYNNNNRTG 1 cut(s) 530
SaqAI TTAA 3 cut(s) 291, 615, 755
SatI GCNGC 2 cut(s) 180, 707
Sau3AI GATC 3 cut(s) 109, 304, 889
Sau96I GGNCC 3 cut(s) 426, 772, 1052
SchI GAGTC 2 cut(s) 186, 754
ScrFI CCNGG 3 cut(s) 620, 720, 776
SfaNI GCATC 4 cut(s) 62, 274, 374, 895
SfcI CTRYAG 1 cut(s) 732
SfuI TTCGAA 1 cut(s) 840
SinI GGWCC 3 cut(s) 426, 772, 1052
SmiMI CAYNNNNRTG 1 cut(s) 530
SsiI CCGC 3 cut(s) 179, 212, 410
SspI AATATT 1 cut(s) 151
SspMI CTAG 6 cut(s) 353, 380, 440, 453, 830, 981
StyD4I CCNGG 3 cut(s) 618, 718, 774
TaaI ACNGT 1 cut(s) 664
TaiI ACGT 2 cut(s) 1030, 1081
TaqI TCGA 3 cut(s) 578, 840, 1104
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 3 cut(s) 580, 723, 815
Tru1I TTAA 3 cut(s) 291, 615, 755
Tru9I TTAA 3 cut(s) 291, 615, 755
TscAI CASTG 1 cut(s) 280
TseFI GTSAC 2 cut(s) 308, 1091
TseI GCWGC 1 cut(s) 706
Tsp45I GTSAC 2 cut(s) 308, 1091
TspDTI ATGAA 5 cut(s) 416, 807, 934, 1010, 1083
TspGWI ACGGA 1 cut(s) 859
TspRI CASTG 1 cut(s) 280
Van91I CCANNNNNTGG 1 cut(s) 275
VpaK11BI GGWCC 3 cut(s) 426, 772, 1052
XapI RAATTY 4 cut(s) 836, 958, 974, 1058
XspI CTAG 6 cut(s) 353, 380, 440, 453, 830, 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.