pycom02g15130

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0012316
Physical Location & Seq
Reverse (-)
11832513 .. 11833881
1369 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g15130.2

Sequence Viewer

Length: 693 bp
ATGTGCAGTTTTGCAAAAGATACATGTTCAGCTTTTGAGGGTTTTGAACACAACAGCCACAACAGTAGTCTAAGCTCCATTCTTCCATGCTTAGATGCTACACGCTCAGAGAAGTTGATGGGTCAAATTGGCTACACCATACACACTTTCATAAATAAGTTGAATTCTAAAGTGACAGAAATTGCTAAGACGCTTGGAGTAAACGAAGAAAATGATGATTCAGTTGGATTTCTACGTATATGCAATCCTTTCTCCGGACCACCTAACTACACCTACGTACCACAAAGTTGCTCAAACAGTGGCATTCCAGTTGGAAAGTTACCAGAAGCCATTTCAGGAATCACTTGTTACCAAAACGACATGGAAAATTGCAAAAGAAGTGGAAAACTTGTTTCCCAGGACAACTACAACATGGCCTGGGCTTTCAGCCACTCTATTCAACATTTTCTAGATATATATCCAACTCTGCAGAGCTTATCAGATTGCACCTTCGTTAAGGATGGAATTTCCGACGTCGTTTCGCATCAATGCAAGCCATTTAAGAATTCACTGAAAATGCTATGGGTCTCCATGCTATCCCTAGCCATTTCCATGGTGTTTTTAGTACTACTTTTGGTCATCAAAGTTTTTCAAGATAGGGGAAGATGTTTCACTAAATTTGCCATCATCCCTTGCTTGCCAGTGACTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

231

Amino Acids

25.53

Weight (kDa)

6.97

Isoelectric Point (pI)

39.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67550
fragaria_vesca FvH4_1g17730 FvH4_1g17750 FvH4_1g17750
malus_domestica MD02G1186300.v1.1
prunus_persica Prupe.6G220300_v2.0.a1 Prupe.6G220300_v2.0.a1
pyrus_communis pycom02g15130 pycom02g15140
rosa_chinensis RchiOBHm_Chr2g0108061
rosa_laevigata RLG00000017637
rosa_roxburghii Rroxscaffold_2G00135650
rosa_rugosa Rorug02G0149900 Rorug02G0150000
rosa_samantha Rh2AG199200 Rh2BG212000 Rh2CG203800 Rh2DG206800
rosa_wichuraiana Rw2G015810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 516
AccIII TCCGGA 1 cut(s) 254
AcsI RAATTY 4 cut(s) 163, 504, 544, 656
AcyI GRCGYC 1 cut(s) 513
AfaI GTAC 2 cut(s) 279, 606
AfiI CCNNNNNNNGG 1 cut(s) 254
AflIII ACRYGT 1 cut(s) 23
AgsI TTSAA 4 cut(s) 47, 163, 440, 632
AjnI CCWGG 2 cut(s) 396, 416
AluBI AGCT 3 cut(s) 32, 75, 474
AluI AGCT 3 cut(s) 32, 75, 474
Alw26I GTCTC 1 cut(s) 571
Aor13HI TCCGGA 1 cut(s) 254
AoxI GGCC 1 cut(s) 414
ApoI RAATTY 4 cut(s) 163, 504, 544, 656
AspS9I GGNCC 1 cut(s) 257
AvaII GGWCC 1 cut(s) 257
BaeI ACNNNNGTAYC 2 cut(s) 261, 294
BccI CCATC 3 cut(s) 112, 494, 671
BciT130I CCWGG 2 cut(s) 398, 418
BcoDI GTCTC 1 cut(s) 571
BfaI CTAG 2 cut(s) 449, 581
BfmI CTRYAG 1 cut(s) 467
BmcAI AGTACT 1 cut(s) 606
Bme1390I CCNGG 2 cut(s) 398, 418
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 257
BmrFI CCNGG 2 cut(s) 398, 418
BmsI GCATC 2 cut(s) 85, 532
BsaAI YACGTR 2 cut(s) 236, 277
BsaBI GATNNNNATC 1 cut(s) 456
BsaHI GRCGYC 1 cut(s) 513
BsaI GGTCTC 1 cut(s) 571
BsaJI CCNNGG 3 cut(s) 396, 417, 591
BsaWI WCCGGW 1 cut(s) 254
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse1I ACTGG 2 cut(s) 308, 680
Bse8I GATNNNNATC 1 cut(s) 456
BseAI TCCGGA 1 cut(s) 254
BseBI CCWGG 2 cut(s) 398, 418
BseDI CCNNGG 3 cut(s) 396, 417, 591
BseGI GGATG 2 cut(s) 505, 666
BseJI GATNNNNATC 1 cut(s) 456
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMII CTCAG 1 cut(s) 120
BseNI ACTGG 2 cut(s) 308, 680
BsgI GTGCAG 1 cut(s) 25
BshFI GGCC 1 cut(s) 416
BsiSI CCGG 1 cut(s) 255
BslI CCNNNNNNNGG 1 cut(s) 254
BsmAI GTCTC 1 cut(s) 571
BsmI GAATGC 1 cut(s) 303
BsnI GGCC 1 cut(s) 416
Bso31I GGTCTC 1 cut(s) 571
Bsp13I TCCGGA 1 cut(s) 254
Bsp19I CCATGG 1 cut(s) 591
BspANI GGCC 1 cut(s) 416
BspCNI CTCAG 1 cut(s) 119
BspEI TCCGGA 1 cut(s) 254
BspMAI CTGCAG 1 cut(s) 471
BspTNI GGTCTC 1 cut(s) 571
BsrI ACTGG 2 cut(s) 308, 680
BssECI CCNNGG 3 cut(s) 396, 417, 591
BssNI GRCGYC 1 cut(s) 513
BssT1I CCWWGG 1 cut(s) 591
Bst2UI CCWGG 2 cut(s) 398, 418
Bst4CI ACNGT 2 cut(s) 65, 299
BstACI GRCGYC 1 cut(s) 513
BstBAI YACGTR 2 cut(s) 236, 277
BstC8I GCNNGC 2 cut(s) 533, 677
BstDEI CTNAG 4 cut(s) 71, 91, 106, 186
BstDSI CCRYGG 1 cut(s) 591
BstF5I GGATG 2 cut(s) 505, 666
BstMAI GTCTC 1 cut(s) 571
BstNI CCWGG 2 cut(s) 398, 418
BstNSI RCATGY 1 cut(s) 27
BstSCI CCNGG 2 cut(s) 396, 416
BstSFI CTRYAG 1 cut(s) 467
BstSNI TACGTA 2 cut(s) 236, 277
BstXI CCANNNNNNTGG 1 cut(s) 592
BsuRI GGCC 1 cut(s) 416
BtgI CCRYGG 1 cut(s) 591
BtsCI GGATG 2 cut(s) 505, 666
BtsIMutI CAGTG 3 cut(s) 304, 548, 687
Cac8I GCNNGC 2 cut(s) 533, 677
Cfr13I GGNCC 1 cut(s) 257
CseI GACGC 1 cut(s) 199
Csp6I GTAC 2 cut(s) 278, 605
CspCI CAANNNNNGTGG 2 cut(s) 361, 396
CviAII CATG 6 cut(s) 24, 87, 361, 412, 571, 592
CviQI GTAC 2 cut(s) 278, 605
DdeI CTNAG 4 cut(s) 71, 91, 106, 186
Eco105I TACGTA 2 cut(s) 236, 277
Eco130I CCWWGG 1 cut(s) 591
Eco31I GGTCTC 1 cut(s) 571
Eco47I GGWCC 1 cut(s) 257
EcoRI GAATTC 2 cut(s) 163, 544
EcoRII CCWGG 2 cut(s) 396, 416
EcoT14I CCWWGG 1 cut(s) 591
ErhI CCWWGG 1 cut(s) 591
FaeI CATG 6 cut(s) 27, 90, 364, 415, 574, 595
FatI CATG 6 cut(s) 23, 86, 360, 411, 570, 591
FokI GGATG 2 cut(s) 512, 653
FspBI CTAG 2 cut(s) 449, 581
HaeIII GGCC 1 cut(s) 416
HapII CCGG 1 cut(s) 255
HgaI GACGC 1 cut(s) 199
Hin1I GRCGYC 1 cut(s) 513
Hin1II CATG 6 cut(s) 27, 90, 364, 415, 574, 595
HinfI GANTC 3 cut(s) 218, 339, 685
HpaII CCGG 1 cut(s) 255
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 3 cut(s) 109, 481, 511
Hpy188III TCNNGA 4 cut(s) 255, 336, 449, 632
Hpy8I GTNNAC 1 cut(s) 202
Hpy99I CGWCG 2 cut(s) 515, 518
HpyAV CCTTC 1 cut(s) 499
HpyCH4III ACNGT 2 cut(s) 65, 299
HpyCH4IV ACGT 3 cut(s) 235, 276, 513
HpyCH4V TGCA 7 cut(s) 6, 14, 243, 372, 469, 486, 531
HpyF3I CTNAG 4 cut(s) 71, 91, 106, 186
HpySE526I ACGT 3 cut(s) 235, 276, 513
Hsp92I GRCGYC 1 cut(s) 513
Hsp92II CATG 6 cut(s) 27, 90, 364, 415, 574, 595
Kpn2I TCCGGA 1 cut(s) 254
LmnI GCTCC 1 cut(s) 80
LpnPI CCDG 8 cut(s) 268, 321, 321, 336, 383, 403, 410, 430
LweI GCATC 2 cut(s) 85, 532
MaeI CTAG 2 cut(s) 449, 581
MaeII ACGT 3 cut(s) 235, 276, 513
MaeIII GTNAC 4 cut(s) 172, 318, 347, 682
MboII GAAGA 3 cut(s) 74, 218, 654
MluCI AATT 7 cut(s) 126, 163, 180, 367, 504, 544, 656
MlyI GAGTC 1 cut(s) 679
MmeI TCCRAC 4 cut(s) 205, 292, 485, 534
MnlI CCTC 1 cut(s) 31
MroI TCCGGA 1 cut(s) 254
MseI TTAA 2 cut(s) 495, 540
MslI CAYNNNNRTG 1 cut(s) 590
MspI CCGG 1 cut(s) 255
MspR9I CCNGG 2 cut(s) 398, 418
Mva1269I GAATGC 1 cut(s) 303
MvaI CCWGG 2 cut(s) 398, 418
NcoI CCATGG 1 cut(s) 591
NlaIII CATG 6 cut(s) 27, 90, 364, 415, 574, 595
NmuCI GTSAC 2 cut(s) 172, 682
NspI RCATGY 1 cut(s) 27
PciI ACATGT 1 cut(s) 23
PctI GAATGC 1 cut(s) 303
PfeI GAWTC 2 cut(s) 218, 339
PleI GAGTC 1 cut(s) 679
PpsI GAGTC 1 cut(s) 679
Ppu21I YACGTR 2 cut(s) 236, 277
PscI ACATGT 1 cut(s) 23
Psp6I CCWGG 2 cut(s) 396, 416
PspGI CCWGG 2 cut(s) 396, 416
PspPI GGNCC 1 cut(s) 257
PstI CTGCAG 1 cut(s) 471
RsaI GTAC 2 cut(s) 279, 606
RsaNI GTAC 2 cut(s) 278, 605
RseI CAYNNNNRTG 1 cut(s) 590
SaqAI TTAA 2 cut(s) 495, 540
Sau96I GGNCC 1 cut(s) 257
ScaI AGTACT 1 cut(s) 606
SchI GAGTC 1 cut(s) 679
ScrFI CCNGG 2 cut(s) 398, 418
SetI ASST 9 cut(s) 34, 77, 238, 265, 275, 279, 476, 491, 516
SfaNI GCATC 2 cut(s) 85, 532
SfcI CTRYAG 1 cut(s) 467
SinI GGWCC 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 590
SnaBI TACGTA 2 cut(s) 236, 277
Sse9I AATT 7 cut(s) 126, 163, 180, 367, 504, 544, 656
SspMI CTAG 2 cut(s) 449, 581
StyD4I CCNGG 2 cut(s) 396, 416
StyI CCWWGG 1 cut(s) 591
TaaI ACNGT 2 cut(s) 65, 299
TaiI ACGT 3 cut(s) 238, 279, 516
TasI AATT 7 cut(s) 126, 163, 180, 367, 504, 544, 656
TatI WGTACW 1 cut(s) 604
TfiI GAWTC 2 cut(s) 218, 339
Tru1I TTAA 2 cut(s) 495, 540
Tru9I TTAA 2 cut(s) 495, 540
TscAI CASTG 3 cut(s) 304, 555, 687
TseFI GTSAC 2 cut(s) 172, 682
Tsp45I GTSAC 2 cut(s) 172, 682
TspDTI ATGAA 1 cut(s) 139
TspRI CASTG 3 cut(s) 304, 555, 687
VpaK11BI GGWCC 1 cut(s) 257
XapI RAATTY 4 cut(s) 163, 504, 544, 656
XbaI TCTAGA 1 cut(s) 448
XceI RCATGY 1 cut(s) 27
XspI CTAG 2 cut(s) 449, 581
ZraI GACGTC 1 cut(s) 514
ZrmI AGTACT 1 cut(s) 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.