Rh2AG199200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0012316
Physical Location & Seq
Reverse (-)
20114909 .. 20118128
3220 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG199200.1

Sequence Viewer

Length: 1476 bp
ATGTCTATCCCAAATGGGGTTCTACTACACATCGTTTTCTTCTTGTTCTTGGCATCTTTACTTTCGCCGAAATGGGTTGTGCATGGGGAGAGCAACACGAAGAGACCGGATCCTTTGCGCCACCTAAAGAACTACAATGGAACTTTCAATATTCAAAGCAAGGATTACTGGGCTTCTGCGGCATTTACAGGACTCTATGGGTACATTATCGCGGGAGTTTGGTTGCTATGTGGAATGGGATTTGCAATTTTCCTGACCTTCAAGCATCCAAACACTGGGAATTGGCGCATTAAACACTTTTTGGATCGTCACTCTATCCTAATGTTCTTGTTGGTTCTTCTCTTTACTCTGCTAGCCATAGTTGCATCAAGTTCGGCGCTAGCAGTGAATCACAGCTCTATGAAAGGAGCGGAGAAATTGAAGAGGACCATATTCAGCCTAGCTGAAAGTGCTCGCCAAACCATCAGCAAAGTTACAAAAGTAATGAGAAAAATGGAATACATATTACTCCCTTATGATAAAGGCATTTCTATGAGCTTGAATAAGACATCCCATCAACTTGGAAAAGGATTGCGTTCGATTCAAACATTGGTTGACAACAATAGCCATACTCTTAACCAGGCAATTCAAGCCCCATATATAGCTCATCTTGTGATTGTAACGGTCAACTTGGTGGTACTGGTTGTGGCAATAGTTCTTCTCTTGCTGCATTGGTACCCAGGATTCGTAACTATAGTCATTCTGTGCTGGATATTAACGACTCTGGTGTGGGTCCTGGCTGGTTTAGATTTCTTCCTTCACAATTTTGCAGATGATTCATGTTCAGCCCTAGAGGAATTCGAACGGAATGATAACTACAATACTCTAAGCTCAATCCTGCCATGCTTGGATCCGAAAAACTCAGATGCTCTGTTGGCTGAAATTGGCTCTACCATATATAATTTCATAGATAAGTTGAATTCTAAAGTAGTAGAATTTTCTAGGTTGCTTGGAATGAATGAACAAAATGCTGATTTTGCATTTCTACGTGTATGCAATCCTTTCTCTGGAGGACCTAAATTCAGCTATGAACCAGAACGTTGCCTAAATAGTCACATTACAATCGAAAAACTACCAGATGCCATTGCAGGAGTAACTTGTTACGATGACCAGGACAAGGAAGCATGCAAAAGAAGTGGAAGGCTCCTTCCCCATACCTATTACAACATGGCCAGTGCTTACAGCCAATCCATCCAAGAATTTCTGAAACTATATCCTACCCTGCAGAGCCTAGCCTACTGCACACTTGTCAAGGATGGGATTTCCGAGATCGTCAGGTATCAATGCAGGCCAATTAAGCTTGCGTTTCGACTGCTATGGGCGTCCATCCTCTCCCTTGCCATTTTCATGGTGTTTTTAGTAGTACTTCTGGTGGCAAGAGCTTTACAAGAGAAAGGTAGAGACTTCACTATATTTACCATCACCCTTTCCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

491

Amino Acids

55.33

Weight (kDa)

8.93

Isoelectric Point (pI)

35.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67550
fragaria_vesca FvH4_1g17730 FvH4_1g17750 FvH4_1g17750
malus_domestica MD02G1186300.v1.1
prunus_persica Prupe.6G220300_v2.0.a1 Prupe.6G220300_v2.0.a1
pyrus_communis pycom02g15130 pycom02g15140
rosa_chinensis RchiOBHm_Chr2g0108061
rosa_laevigata RLG00000017637
rosa_roxburghii Rroxscaffold_2G00135650
rosa_rugosa Rorug02G0149900 Rorug02G0150000
rosa_samantha Rh2AG199200 Rh2BG212000 Rh2CG203800 Rh2DG206800
rosa_wichuraiana Rw2G015810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 714
AccB1I GGYRCC 1 cut(s) 714
AccB7I CCANNNNNTGG 1 cut(s) 275
AccBSI CCGCTC 1 cut(s) 410
AccII CGCG 1 cut(s) 212
AciI CCGC 3 cut(s) 179, 212, 410
AclI AACGTT 1 cut(s) 1078
AclWI GGATC 5 cut(s) 104, 117, 312, 884, 897
AcoI YGGCCR 1 cut(s) 1209
AcsI RAATTY 5 cut(s) 836, 958, 974, 1058, 1238
AcyI GRCGYC 1 cut(s) 1361
AfaI GTAC 4 cut(s) 203, 678, 716, 1404
AfiI CCNNNNNNNGG 4 cut(s) 16, 275, 1046, 1156
AflIII ACRYGT 1 cut(s) 1027
AgsI TTSAA 8 cut(s) 148, 155, 262, 421, 541, 584, 629, 958
AjnI CCWGG 4 cut(s) 618, 718, 774, 1149
AluBI AGCT 8 cut(s) 396, 443, 537, 644, 870, 1065, 1339, 1421
AluI AGCT 8 cut(s) 396, 443, 537, 644, 870, 1065, 1339, 1421
Alw21I GWGCWC 1 cut(s) 454
Alw26I GTCTC 2 cut(s) 97, 1434
AlwI GGATC 5 cut(s) 104, 117, 312, 884, 897
AoxI GGCC 2 cut(s) 1209, 1328
ApeKI GCWGC 1 cut(s) 706
ApoI RAATTY 5 cut(s) 836, 958, 974, 1058, 1238
Asp718I GGTACC 1 cut(s) 714
AspLEI GCGC 3 cut(s) 120, 288, 379
AspS9I GGNCC 3 cut(s) 426, 772, 1052
AsuHPI GGTGA 1 cut(s) 1453
AsuII TTCGAA 1 cut(s) 840
AsuNHI GCTAGC 2 cut(s) 352, 379
AvaII GGWCC 3 cut(s) 426, 772, 1052
BalI TGGCCA 1 cut(s) 1211
BamHI GGATCC 2 cut(s) 109, 889
BanI GGYRCC 1 cut(s) 714
Bbv12I GWGCWC 1 cut(s) 454
BbvI GCAGC 1 cut(s) 693
BccI CCATC 6 cut(s) 470, 561, 1238, 1289, 1373, 1466
BcgI CGANNNNNNTGC 2 cut(s) 354, 388
BciT130I CCWGG 4 cut(s) 620, 720, 776, 1151
BcoDI GTCTC 2 cut(s) 97, 1434
BfaI CTAG 6 cut(s) 353, 380, 440, 830, 981, 1271
BfmI CTRYAG 2 cut(s) 732, 1262
BfoI RGCGCY 1 cut(s) 380
BisI GCNGC 2 cut(s) 180, 707
BlsI GCNGC 2 cut(s) 181, 708
BmcAI AGTACT 1 cut(s) 1404
Bme1390I CCNGG 4 cut(s) 620, 720, 776, 1151
Bme18I GGWCC 3 cut(s) 426, 772, 1052
BmgT120I GGNCC 3 cut(s) 426, 772, 1052
BmiI GGNNCC 5 cut(s) 111, 716, 773, 891, 1184
BmrFI CCNGG 4 cut(s) 620, 720, 776, 1151
BmrI ACTGGG 2 cut(s) 178, 285
BmsI GCATC 5 cut(s) 62, 274, 374, 895, 1108
BmtI GCTAGC 2 cut(s) 356, 383
BmuI ACTGGG 2 cut(s) 178, 285
BpmI CTGGAG 1 cut(s) 1068
Bpu14I TTCGAA 1 cut(s) 840
BsaAI YACGTR 1 cut(s) 1028
BsaHI GRCGYC 1 cut(s) 1361
BsaI GGTCTC 1 cut(s) 97
BsaJI CCNNGG 1 cut(s) 718
BsaWI WCCGGW 1 cut(s) 106
Bsc4I CCNNNNNNNGG 4 cut(s) 16, 275, 1046, 1156
Bse1I ACTGG 4 cut(s) 173, 280, 684, 1212
Bse3DI GCAATG 1 cut(s) 1122
BseBI CCWGG 4 cut(s) 620, 720, 776, 1151
BseDI CCNNGG 1 cut(s) 718
BseGI GGATG 5 cut(s) 265, 548, 1230, 1300, 1365
BseLI CCNNNNNNNGG 4 cut(s) 16, 275, 1046, 1156
BseMI GCAATG 1 cut(s) 1122
BseMII CTCAG 1 cut(s) 915
BseNI ACTGG 4 cut(s) 173, 280, 684, 1212
BseXI GCAGC 1 cut(s) 693
BsgI GTGCAG 1 cut(s) 1264
Bsh1236I CGCG 1 cut(s) 212
BshFI GGCC 2 cut(s) 1211, 1330
BshNI GGYRCC 1 cut(s) 714
BsiHKAI GWGCWC 1 cut(s) 454
BsiSI CCGG 1 cut(s) 107
BslI CCNNNNNNNGG 4 cut(s) 16, 275, 1046, 1156
BsmAI GTCTC 2 cut(s) 97, 1434
BsnI GGCC 2 cut(s) 1211, 1330
Bso31I GGTCTC 1 cut(s) 97
Bsp119I TTCGAA 1 cut(s) 840
Bsp1286I GDGCHC 1 cut(s) 454
Bsp143I GATC 4 cut(s) 109, 304, 889, 1308
BspACI CCGC 3 cut(s) 179, 212, 410
BspANI GGCC 2 cut(s) 1211, 1330
BspCNI CTCAG 1 cut(s) 914
BspFNI CGCG 1 cut(s) 212
BspLI GGNNCC 5 cut(s) 111, 716, 773, 891, 1184
BspMAI CTGCAG 1 cut(s) 1266
BspOI GCTAGC 2 cut(s) 356, 383
BspPI GGATC 5 cut(s) 104, 117, 312, 884, 897
BspT104I TTCGAA 1 cut(s) 840
BspT107I GGYRCC 1 cut(s) 714
BspTNI GGTCTC 1 cut(s) 97
BsrBI CCGCTC 1 cut(s) 410
BsrDI GCAATG 1 cut(s) 1122
BsrI ACTGG 4 cut(s) 173, 280, 684, 1212
BssECI CCNNGG 1 cut(s) 718
BssMI GATC 4 cut(s) 109, 304, 889, 1308
BssNI GRCGYC 1 cut(s) 1361
Bst2UI CCWGG 4 cut(s) 620, 720, 776, 1151
Bst4CI ACNGT 1 cut(s) 664
Bst6I CTCTTC 2 cut(s) 95, 416
BstACI GRCGYC 1 cut(s) 1361
BstBAI YACGTR 1 cut(s) 1028
BstBI TTCGAA 1 cut(s) 840
BstC8I GCNNGC 6 cut(s) 354, 381, 454, 1165, 1328, 1341
BstDEI CTNAG 2 cut(s) 866, 901
BstF5I GGATG 5 cut(s) 265, 548, 1230, 1300, 1365
BstFNI CGCG 1 cut(s) 212
BstH2I RGCGCY 1 cut(s) 380
BstHHI GCGC 3 cut(s) 120, 288, 379
BstKTI GATC 4 cut(s) 112, 307, 892, 1311
BstMAI GTCTC 2 cut(s) 97, 1434
BstMBI GATC 4 cut(s) 109, 304, 889, 1308
BstMWI GCNNNNNNNGC 7 cut(s) 179, 362, 449, 629, 914, 1016, 1336
BstNI CCWGG 4 cut(s) 620, 720, 776, 1151
BstNSI RCATGY 1 cut(s) 1167
BstSCI CCNGG 4 cut(s) 618, 718, 774, 1149
BstSFI CTRYAG 2 cut(s) 732, 1262
BstUI CGCG 1 cut(s) 212
BstV1I GCAGC 1 cut(s) 693
BstX2I RGATCY 2 cut(s) 109, 889
BstXI CCANNNNNNTGG 2 cut(s) 560, 1387
BstYI RGATCY 2 cut(s) 109, 889
BsuRI GGCC 2 cut(s) 1211, 1330
BtsCI GGATG 5 cut(s) 265, 548, 1230, 1300, 1365
BtsI GCAGTG 1 cut(s) 390
BtsIMutI CAGTG 3 cut(s) 273, 390, 1219
Cac8I GCNNGC 6 cut(s) 354, 381, 454, 1165, 1328, 1341
CfoI GCGC 3 cut(s) 120, 288, 379
Cfr13I GGNCC 3 cut(s) 426, 772, 1052
CseI GACGC 1 cut(s) 1350
Csp6I GTAC 4 cut(s) 202, 677, 715, 1403
CspCI CAANNNNNGTGG 2 cut(s) 1156, 1191
CviAII CATG 6 cut(s) 83, 819, 882, 1164, 1207, 1387
CviQI GTAC 4 cut(s) 202, 677, 715, 1403
DdeI CTNAG 2 cut(s) 866, 901
DpnI GATC 4 cut(s) 111, 306, 891, 1310
DpnII GATC 4 cut(s) 109, 304, 889, 1308
EaeI YGGCCR 1 cut(s) 1209
Eam1104I CTCTTC 2 cut(s) 95, 416
EarI CTCTTC 2 cut(s) 95, 416
Eco31I GGTCTC 1 cut(s) 97
Eco47I GGWCC 3 cut(s) 426, 772, 1052
EcoO109I RGGNCCY 2 cut(s) 772, 1052
EcoRI GAATTC 2 cut(s) 836, 958
EcoRII CCWGG 4 cut(s) 618, 718, 774, 1149
FaeI CATG 6 cut(s) 86, 822, 885, 1167, 1210, 1390
FatI CATG 6 cut(s) 82, 818, 881, 1163, 1206, 1386
FauI CCCGC 1 cut(s) 205
Fnu4HI GCNGC 2 cut(s) 180, 707
FokI GGATG 5 cut(s) 252, 535, 1217, 1307, 1352
Fsp4HI GCNGC 2 cut(s) 180, 707
FspBI CTAG 6 cut(s) 353, 380, 440, 830, 981, 1271
GlaI GCGC 3 cut(s) 119, 287, 378
GluI GCNGC 2 cut(s) 180, 707
GsuI CTGGAG 1 cut(s) 1068
HaeII RGCGCY 1 cut(s) 380
HaeIII GGCC 2 cut(s) 1211, 1330
HapII CCGG 1 cut(s) 107
HgaI GACGC 1 cut(s) 1350
HhaI GCGC 3 cut(s) 120, 288, 379
Hin1I GRCGYC 1 cut(s) 1361
Hin1II CATG 6 cut(s) 86, 822, 885, 1167, 1210, 1390
Hin6I GCGC 3 cut(s) 118, 286, 377
HinP1I GCGC 3 cut(s) 118, 286, 377
HincII GTYRAC 2 cut(s) 595, 667
HindII GTYRAC 2 cut(s) 595, 667
HindIII AAGCTT 1 cut(s) 1337
HinfI GANTC 6 cut(s) 192, 388, 580, 723, 760, 815
HpaII CCGG 1 cut(s) 107
HphI GGTGA 1 cut(s) 1453
Hpy166II GTNNAC 2 cut(s) 595, 667
Hpy188I TCNGA 4 cut(s) 894, 904, 1245, 1306
Hpy188III TCNNGA 2 cut(s) 253, 1047
Hpy8I GTNNAC 2 cut(s) 595, 667
HpyAV CCTTC 4 cut(s) 268, 806, 1173, 1196
HpyCH4III ACNGT 1 cut(s) 664
HpyCH4IV ACGT 2 cut(s) 1027, 1078
HpyF10VI GCNNNNNNNGC 7 cut(s) 179, 362, 449, 629, 914, 1016, 1336
HpyF3I CTNAG 2 cut(s) 866, 901
HpySE526I ACGT 2 cut(s) 1027, 1078
Hsp92I GRCGYC 1 cut(s) 1361
Hsp92II CATG 6 cut(s) 86, 822, 885, 1167, 1210, 1390
HspAI GCGC 3 cut(s) 118, 286, 377
KpnI GGTACC 1 cut(s) 718
Kzo9I GATC 4 cut(s) 109, 304, 889, 1308
LmnI GCTCC 2 cut(s) 407, 1188
Lsp1109I GCAGC 1 cut(s) 693
LweI GCATC 5 cut(s) 62, 274, 374, 895, 1108
MaeI CTAG 6 cut(s) 353, 380, 440, 830, 981, 1271
MaeII ACGT 2 cut(s) 1027, 1078
MaeIII GTNAC 7 cut(s) 308, 472, 658, 727, 1091, 1132, 1139
MalI GATC 4 cut(s) 111, 306, 891, 1310
MbiI CCGCTC 1 cut(s) 410
MboI GATC 4 cut(s) 109, 304, 889, 1308
MboII GAAGA 6 cut(s) 31, 112, 329, 433, 689, 784
MflI RGATCY 2 cut(s) 109, 889
MhlI GDGCHC 1 cut(s) 454
MlsI TGGCCA 1 cut(s) 1211
MluNI TGGCCA 1 cut(s) 1211
MlyI GAGTC 2 cut(s) 186, 754
MnlI CCTC 4 cut(s) 417, 826, 1043, 1379
Mox20I TGGCCA 1 cut(s) 1211
MscI TGGCCA 1 cut(s) 1211
MseI TTAA 4 cut(s) 291, 615, 755, 1335
MslI CAYNNNNRTG 2 cut(s) 530, 1385
Msp20I TGGCCA 1 cut(s) 1211
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 4 cut(s) 620, 720, 776, 1151
MvaI CCWGG 4 cut(s) 620, 720, 776, 1151
MvnI CGCG 1 cut(s) 212
MwoI GCNNNNNNNGC 7 cut(s) 179, 362, 449, 629, 914, 1016, 1336
NdeII GATC 4 cut(s) 109, 304, 889, 1308
NheI GCTAGC 2 cut(s) 352, 379
NlaIII CATG 6 cut(s) 86, 822, 885, 1167, 1210, 1390
NlaIV GGNNCC 5 cut(s) 111, 716, 773, 891, 1184
NmuCI GTSAC 2 cut(s) 308, 1091
NspI RCATGY 1 cut(s) 1167
NspV TTCGAA 1 cut(s) 840
PaeI GCATGC 1 cut(s) 1167
PfeI GAWTC 4 cut(s) 388, 580, 723, 815
PflMI CCANNNNNTGG 1 cut(s) 275
PkrI GCNGC 2 cut(s) 181, 708
PleI GAGTC 2 cut(s) 186, 754
PpsI GAGTC 2 cut(s) 186, 754
Ppu21I YACGTR 1 cut(s) 1028
PpuMI RGGWCCY 2 cut(s) 772, 1052
Psp1406I AACGTT 1 cut(s) 1078
Psp5II RGGWCCY 2 cut(s) 772, 1052
Psp6I CCWGG 4 cut(s) 618, 718, 774, 1149
PspGI CCWGG 4 cut(s) 618, 718, 774, 1149
PspN4I GGNNCC 5 cut(s) 111, 716, 773, 891, 1184
PspPI GGNCC 3 cut(s) 426, 772, 1052
PspPPI RGGWCCY 2 cut(s) 772, 1052
PstI CTGCAG 1 cut(s) 1266
PsuI RGATCY 2 cut(s) 109, 889
RsaI GTAC 4 cut(s) 203, 678, 716, 1404
RsaNI GTAC 4 cut(s) 202, 677, 715, 1403
RseI CAYNNNNRTG 2 cut(s) 530, 1385
SaqAI TTAA 4 cut(s) 291, 615, 755, 1335
SatI GCNGC 2 cut(s) 180, 707
Sau3AI GATC 4 cut(s) 109, 304, 889, 1308
Sau96I GGNCC 3 cut(s) 426, 772, 1052
ScaI AGTACT 1 cut(s) 1404
SchI GAGTC 2 cut(s) 186, 754
ScrFI CCNGG 4 cut(s) 620, 720, 776, 1151
SduI GDGCHC 1 cut(s) 454
SfaNI GCATC 5 cut(s) 62, 274, 374, 895, 1108
SfcI CTRYAG 2 cut(s) 732, 1262
SfuI TTCGAA 1 cut(s) 840
SinI GGWCC 3 cut(s) 426, 772, 1052
SmiMI CAYNNNNRTG 2 cut(s) 530, 1385
SphI GCATGC 1 cut(s) 1167
SsiI CCGC 3 cut(s) 179, 212, 410
SspI AATATT 1 cut(s) 151
SspMI CTAG 6 cut(s) 353, 380, 440, 830, 981, 1271
StyD4I CCNGG 4 cut(s) 618, 718, 774, 1149
TaaI ACNGT 1 cut(s) 664
TaiI ACGT 2 cut(s) 1030, 1081
TaqI TCGA 4 cut(s) 578, 840, 1104, 1348
TatI WGTACW 1 cut(s) 1402
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 4 cut(s) 388, 580, 723, 815
Tru1I TTAA 4 cut(s) 291, 615, 755, 1335
Tru9I TTAA 4 cut(s) 291, 615, 755, 1335
TscAI CASTG 3 cut(s) 280, 390, 1219
TseFI GTSAC 2 cut(s) 308, 1091
TseI GCWGC 1 cut(s) 706
Tsp45I GTSAC 2 cut(s) 308, 1091
TspDTI ATGAA 7 cut(s) 416, 807, 934, 1010, 1014, 1083, 1375
TspGWI ACGGA 1 cut(s) 859
TspRI CASTG 3 cut(s) 280, 390, 1219
Van91I CCANNNNNTGG 1 cut(s) 275
VpaK11BI GGWCC 3 cut(s) 426, 772, 1052
XapI RAATTY 5 cut(s) 836, 958, 974, 1058, 1238
XceI RCATGY 1 cut(s) 1167
XspI CTAG 6 cut(s) 353, 380, 440, 830, 981, 1271
ZrmI AGTACT 1 cut(s) 1404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.