FvH4_1g18110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017966
Physical Location & Seq
Forward (+)
10524739 .. 10525589
851 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g18110.t1

Sequence Viewer

Length: 357 bp
ATGGATAGGTACCATCCTCTTCGTTCCGATTCCATGGATTCAAGGAGTTGCCCCAGTCTGTGCTATTGCGGAGGCTTACCGGTTGAGGTTGAGCCCAAGGCCACGATGAGTAGTACTGCTTCACAAAACATCACTACAAGCTGTGGGAAGACTGTTCCGATGTGCACAAAGCTTGACGATTTGGGAGGCTGGCTCGTCGACAACGTGTTGGCAGCTTTCTTTGGGTCTCTGCGGCGCTGCTCTTGCATGCACATCGACACCAAAGACGATCCTGACCACGATCCTATAAACATGCCTCTTAGTACAGTCAACAACGAAAATACCGACATTGAAATCCCAATAGCTACTGGAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

12.86

Weight (kDa)

4.63

Isoelectric Point (pI)

79.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017966)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18110 FvH4_1g18141
prunus_persica Prupe.6G217400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0108601
rosa_laevigata RLG00000017680
rosa_roxburghii Rroxscaffold_2G00134990
rosa_samantha Rh2AG203600 Rh2BG216400 Rh2CG207500 Rh2DG210600
rosa_wichuraiana Rw2G016270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 9
AccB1I GGYRCC 1 cut(s) 9
AccI GTMKAC 1 cut(s) 198
AciI CCGC 2 cut(s) 69, 232
AclWI GGATC 2 cut(s) 263, 275
AfaI GTAC 3 cut(s) 11, 115, 304
AflIII ACRYGT 1 cut(s) 204
AgeI ACCGGT 1 cut(s) 79
AgsI TTSAA 2 cut(s) 42, 332
AluBI AGCT 4 cut(s) 141, 172, 215, 344
AluI AGCT 4 cut(s) 141, 172, 215, 344
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 1 cut(s) 231
Alw44I GTGCAC 1 cut(s) 163
AlwI GGATC 2 cut(s) 263, 275
AoxI GGCC 1 cut(s) 99
ApaLI GTGCAC 1 cut(s) 163
ApeKI GCWGC 2 cut(s) 212, 237
AsiGI ACCGGT 1 cut(s) 79
Asp718I GGTACC 1 cut(s) 9
AspLEI GCGC 1 cut(s) 237
BaeGI GKGCMC 1 cut(s) 167
BanI GGYRCC 1 cut(s) 9
BanII GRGCYC 1 cut(s) 96
BarI GAAGNNNNNNTAC 2 cut(s) 103, 135
BbsI GAAGAC 1 cut(s) 155
Bbv12I GWGCWC 1 cut(s) 167
BbvI GCAGC 2 cut(s) 224, 224
BccI CCATC 1 cut(s) 21
BcgI CGANNNNNNTGC 2 cut(s) 235, 269
BcoDI GTCTC 1 cut(s) 231
BfoI RGCGCY 1 cut(s) 238
BisI GCNGC 3 cut(s) 213, 233, 238
BlsI GCNGC 3 cut(s) 214, 234, 239
BmcAI AGTACT 1 cut(s) 115
BmiI GGNNCC 1 cut(s) 11
BmrI ACTGGG 1 cut(s) 48
BmuI ACTGGG 1 cut(s) 48
BpiI GAAGAC 1 cut(s) 155
BplI GAGNNNNNCTC 2 cut(s) 177, 209
BsaI GGTCTC 1 cut(s) 231
BsaJI CCNNGG 2 cut(s) 33, 96
BsaWI WCCGGW 1 cut(s) 79
Bse118I RCCGGY 1 cut(s) 79
Bse1I ACTGG 2 cut(s) 54, 352
BseDI CCNNGG 2 cut(s) 33, 96
BseGI GGATG 1 cut(s) 13
BseNI ACTGG 2 cut(s) 54, 352
BseSI GKGCMC 1 cut(s) 167
BseXI GCAGC 2 cut(s) 224, 224
BshFI GGCC 1 cut(s) 101
BshNI GGYRCC 1 cut(s) 9
BshTI ACCGGT 1 cut(s) 79
BsiHKAI GWGCWC 1 cut(s) 167
BsiSI CCGG 1 cut(s) 80
BsmAI GTCTC 1 cut(s) 231
BsnI GGCC 1 cut(s) 101
Bso31I GGTCTC 1 cut(s) 231
Bsp1286I GDGCHC 2 cut(s) 96, 167
Bsp143I GATC 2 cut(s) 268, 280
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 2 cut(s) 69, 232
BspANI GGCC 1 cut(s) 101
BspLI GGNNCC 1 cut(s) 11
BspPI GGATC 2 cut(s) 263, 275
BspT107I GGYRCC 1 cut(s) 9
BspTNI GGTCTC 1 cut(s) 231
BsrFI RCCGGY 1 cut(s) 79
BsrI ACTGG 2 cut(s) 54, 352
BssAI RCCGGY 1 cut(s) 79
BssECI CCNNGG 2 cut(s) 33, 96
BssMI GATC 2 cut(s) 268, 280
BssT1I CCWWGG 2 cut(s) 33, 96
Bst4CI ACNGT 2 cut(s) 154, 307
Bst6I CTCTTC 1 cut(s) 24
BstC8I GCNNGC 2 cut(s) 191, 248
BstDEI CTNAG 1 cut(s) 299
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 1 cut(s) 13
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 1 cut(s) 237
BstKTI GATC 2 cut(s) 271, 283
BstMAI GTCTC 1 cut(s) 231
BstMBI GATC 2 cut(s) 268, 280
BstMWI GCNNNNNNNGC 1 cut(s) 243
BstNSI RCATGY 2 cut(s) 250, 295
BstSLI GKGCMC 1 cut(s) 167
BstV1I GCAGC 2 cut(s) 224, 224
BstV2I GAAGAC 1 cut(s) 155
BsuRI GGCC 1 cut(s) 101
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 1 cut(s) 13
Cac8I GCNNGC 2 cut(s) 191, 248
CfoI GCGC 1 cut(s) 237
Cfr10I RCCGGY 1 cut(s) 79
Csp6I GTAC 3 cut(s) 10, 114, 303
CspAI ACCGGT 1 cut(s) 79
CviAII CATG 3 cut(s) 34, 247, 292
CviJI RGCY 9 cut(s) 75, 94, 101, 141, 172, 189, 193, 215, 344
CviKI_1 RGCY 9 cut(s) 75, 94, 101, 141, 172, 189, 193, 215, 344
CviQI GTAC 3 cut(s) 10, 114, 303
DdeI CTNAG 1 cut(s) 299
DpnI GATC 2 cut(s) 270, 282
DpnII GATC 2 cut(s) 268, 280
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco130I CCWWGG 2 cut(s) 33, 96
Eco24I GRGCYC 1 cut(s) 96
Eco31I GGTCTC 1 cut(s) 231
EcoT14I CCWWGG 2 cut(s) 33, 96
EcoT38I GRGCYC 1 cut(s) 96
ErhI CCWWGG 2 cut(s) 33, 96
FaeI CATG 3 cut(s) 37, 250, 295
FaiI YATR 4 cut(s) 35, 248, 287, 293
FatI CATG 3 cut(s) 33, 246, 291
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 3 cut(s) 213, 233, 238
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 3 cut(s) 213, 233, 238
GlaI GCGC 1 cut(s) 236
GluI GCNGC 3 cut(s) 213, 233, 238
HaeII RGCGCY 1 cut(s) 238
HaeIII GGCC 1 cut(s) 101
HapII CCGG 1 cut(s) 80
HhaI GCGC 1 cut(s) 237
Hin1II CATG 3 cut(s) 37, 250, 295
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HincII GTYRAC 2 cut(s) 199, 310
HindII GTYRAC 2 cut(s) 199, 310
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 2 cut(s) 29, 38
HpaII CCGG 1 cut(s) 80
Hpy166II GTNNAC 3 cut(s) 165, 199, 310
Hpy188I TCNGA 2 cut(s) 28, 159
Hpy188III TCNNGA 1 cut(s) 272
Hpy8I GTNNAC 3 cut(s) 165, 199, 310
Hpy99I CGWCG 1 cut(s) 200
HpyCH4III ACNGT 2 cut(s) 154, 307
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 3 cut(s) 165, 246, 250
HpyF10VI GCNNNNNNNGC 1 cut(s) 243
HpyF3I CTNAG 1 cut(s) 299
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 3 cut(s) 37, 250, 295
HspAI GCGC 1 cut(s) 235
KpnI GGTACC 1 cut(s) 13
Kzo9I GATC 2 cut(s) 268, 280
LpnPI CCDG 5 cut(s) 67, 93, 175, 285, 333
Lsp1109I GCAGC 2 cut(s) 224, 224
MaeII ACGT 1 cut(s) 204
MalI GATC 2 cut(s) 270, 282
MboI GATC 2 cut(s) 268, 280
MboII GAAGA 2 cut(s) 11, 160
MhlI GDGCHC 2 cut(s) 96, 167
MnlI CCTC 5 cut(s) 27, 65, 79, 179, 306
MspI CCGG 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 243
NcoI CCATGG 1 cut(s) 33
NdeII GATC 2 cut(s) 268, 280
NlaIII CATG 3 cut(s) 37, 250, 295
NlaIV GGNNCC 1 cut(s) 11
NspI RCATGY 2 cut(s) 250, 295
PaeI GCATGC 1 cut(s) 250
PcsI WCGNNNNNNNCGW 2 cut(s) 201, 321
PfeI GAWTC 2 cut(s) 29, 38
PinAI ACCGGT 1 cut(s) 79
PkrI GCNGC 3 cut(s) 214, 234, 239
PspN4I GGNNCC 1 cut(s) 11
RsaI GTAC 3 cut(s) 11, 115, 304
RsaNI GTAC 3 cut(s) 10, 114, 303
SalI GTCGAC 1 cut(s) 197
SatI GCNGC 3 cut(s) 213, 233, 238
Sau3AI GATC 2 cut(s) 268, 280
ScaI AGTACT 1 cut(s) 115
SduI GDGCHC 2 cut(s) 96, 167
SetI ASST 7 cut(s) 11, 90, 143, 174, 207, 217, 346
SphI GCATGC 1 cut(s) 250
SsiI CCGC 2 cut(s) 69, 232
StyI CCWWGG 2 cut(s) 33, 96
TaaI ACNGT 2 cut(s) 154, 307
TaiI ACGT 1 cut(s) 207
TaqI TCGA 2 cut(s) 198, 255
TatI WGTACW 2 cut(s) 113, 302
TauI GCSGC 1 cut(s) 235
TfiI GAWTC 2 cut(s) 29, 38
TseI GCWGC 2 cut(s) 212, 237
VneI GTGCAC 1 cut(s) 163
XceI RCATGY 2 cut(s) 250, 295
XmiI GTMKAC 1 cut(s) 198
ZrmI AGTACT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.