RLG00000017680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017966
Physical Location & Seq
Forward (+)
19750602 .. 19750961
360 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017680

Sequence Viewer

Length: 360 bp
ATGGATAGGTACTATCCTCTTCGTTCCGATTCGATGGATTCAAAGAGTTGCACCAGTTTGTGCTATGGCGGAGGCTTCCCGGTTGAGGTTGAGCCCAAGGCCCCGATGACTAGTACTACTGCTTCACAAAACATTACCACAAGCAGTGGGACGAATATTCCGATGTGCAAAAAGCTTGACGAGTTGGGAGGCTGGCTCGTTGACAGCGTGATAGCAGCTTTCTTTGGGTCTCTGCAGCGCTGCTCTTGCATTCAAATCGATACCAAAGACGACACTGATCATGATCCTATTTACATGCCTCTTAGTAATGCCAACAACGAAGATACCGACATAGAAATCCCAATAGATACTGGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

12.98

Weight (kDa)

4.18

Isoelectric Point (pI)

56.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017966)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18110 FvH4_1g18141
prunus_persica Prupe.6G217400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0108601
rosa_laevigata RLG00000017680
rosa_roxburghii Rroxscaffold_2G00134990
rosa_samantha Rh2AG203600 Rh2BG216400 Rh2CG207500 Rh2DG210600
rosa_wichuraiana Rw2G016270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 69
AclWI GGATC 1 cut(s) 278
AfaI GTAC 2 cut(s) 11, 115
AfeI AGCGCT 1 cut(s) 239
AfiI CCNNNNNNNGG 1 cut(s) 85
AgsI TTSAA 2 cut(s) 42, 254
AhlI ACTAGT 1 cut(s) 110
AluBI AGCT 2 cut(s) 175, 218
AluI AGCT 2 cut(s) 175, 218
Alw26I GTCTC 1 cut(s) 234
AlwI GGATC 1 cut(s) 278
Aor51HI AGCGCT 1 cut(s) 239
AoxI GGCC 1 cut(s) 99
ApeKI GCWGC 3 cut(s) 215, 235, 240
AspLEI GCGC 1 cut(s) 240
AspS9I GGNCC 1 cut(s) 100
AsuC2I CCSGG 1 cut(s) 80
BanII GRGCYC 1 cut(s) 96
BarI GAAGNNNNNNTAC 2 cut(s) 106, 138
BbvI GCAGC 3 cut(s) 227, 227, 247
BccI CCATC 1 cut(s) 28
BcgI CGANNNNNNTGC 2 cut(s) 238, 272
BclI TGATCA 1 cut(s) 277
BcnI CCSGG 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 234
BcuI ACTAGT 1 cut(s) 110
BfaI CTAG 1 cut(s) 111
BfmI CTRYAG 1 cut(s) 233
BfoI RGCGCY 1 cut(s) 241
BisI GCNGC 3 cut(s) 216, 236, 241
BlsI GCNGC 3 cut(s) 217, 237, 242
BmcAI AGTACT 1 cut(s) 115
Bme1390I CCNGG 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 100
BmiI GGNNCC 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 80
BplI GAGNNNNNCTC 2 cut(s) 180, 212
BpuMI CCSGG 1 cut(s) 80
Bsa29I ATCGAT 1 cut(s) 258
BsaBI GATNNNNATC 1 cut(s) 282
BsaI GGTCTC 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 96
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse1I ACTGG 2 cut(s) 54, 355
Bse8I GATNNNNATC 1 cut(s) 282
BseCI ATCGAT 1 cut(s) 258
BseDI CCNNGG 1 cut(s) 96
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 1 cut(s) 85
BseNI ACTGG 2 cut(s) 54, 355
BseXI GCAGC 3 cut(s) 227, 227, 247
BshFI GGCC 1 cut(s) 101
BshVI ATCGAT 1 cut(s) 258
BsiSI CCGG 1 cut(s) 80
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 234
BsmFI GGGAC 1 cut(s) 163
BsmI GAATGC 1 cut(s) 249
BsnI GGCC 1 cut(s) 101
Bso31I GGTCTC 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 2 cut(s) 277, 283
BspACI CCGC 1 cut(s) 69
BspANI GGCC 1 cut(s) 101
BspDI ATCGAT 1 cut(s) 258
BspHI TCATGA 1 cut(s) 280
BspLI GGNNCC 1 cut(s) 102
BspMAI CTGCAG 1 cut(s) 237
BspPI GGATC 1 cut(s) 278
BspTNI GGTCTC 1 cut(s) 234
BsrI ACTGG 2 cut(s) 54, 355
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 2 cut(s) 277, 283
BssT1I CCWWGG 1 cut(s) 96
Bst6I CTCTTC 1 cut(s) 24
BstC8I GCNNGC 1 cut(s) 194
BstDEI CTNAG 1 cut(s) 302
BstH2I RGCGCY 1 cut(s) 241
BstHHI GCGC 1 cut(s) 240
BstKTI GATC 2 cut(s) 280, 286
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 2 cut(s) 277, 283
BstMWI GCNNNNNNNGC 1 cut(s) 246
BstNSI RCATGY 1 cut(s) 298
BstSCI CCNGG 1 cut(s) 78
BstSFI CTRYAG 1 cut(s) 233
BstV1I GCAGC 3 cut(s) 227, 227, 247
Bsu15I ATCGAT 1 cut(s) 258
BsuRI GGCC 1 cut(s) 101
BsuTUI ATCGAT 1 cut(s) 258
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 2 cut(s) 151, 273
Cac8I GCNNGC 1 cut(s) 194
CciI TCATGA 1 cut(s) 280
CfoI GCGC 1 cut(s) 240
Cfr13I GGNCC 1 cut(s) 100
ClaI ATCGAT 1 cut(s) 258
Csp6I GTAC 2 cut(s) 10, 114
CviAII CATG 2 cut(s) 281, 295
CviJI RGCY 7 cut(s) 75, 94, 101, 175, 192, 196, 218
CviKI_1 RGCY 7 cut(s) 75, 94, 101, 175, 192, 196, 218
CviQI GTAC 2 cut(s) 10, 114
DdeI CTNAG 1 cut(s) 302
DpnI GATC 2 cut(s) 279, 285
DpnII GATC 2 cut(s) 277, 283
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
EciI GGCGGA 1 cut(s) 84
Eco130I CCWWGG 1 cut(s) 96
Eco24I GRGCYC 1 cut(s) 96
Eco31I GGTCTC 1 cut(s) 234
Eco47III AGCGCT 1 cut(s) 239
EcoO109I RGGNCCY 1 cut(s) 100
EcoT14I CCWWGG 1 cut(s) 96
EcoT38I GRGCYC 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 2 cut(s) 284, 298
FaiI YATR 5 cut(s) 66, 282, 296, 332, 356
FaqI GGGAC 1 cut(s) 163
FatI CATG 2 cut(s) 280, 294
FbaI TGATCA 1 cut(s) 277
Fnu4HI GCNGC 3 cut(s) 216, 236, 241
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 3 cut(s) 216, 236, 241
FspBI CTAG 1 cut(s) 111
GlaI GCGC 1 cut(s) 239
GluI GCNGC 3 cut(s) 216, 236, 241
HaeII RGCGCY 1 cut(s) 241
HaeIII GGCC 1 cut(s) 101
HapII CCGG 1 cut(s) 80
HhaI GCGC 1 cut(s) 240
Hin1II CATG 2 cut(s) 284, 298
Hin6I GCGC 1 cut(s) 238
HinP1I GCGC 1 cut(s) 238
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 2 cut(s) 29, 38
HpaII CCGG 1 cut(s) 80
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 2 cut(s) 28, 162
Hpy188III TCNNGA 1 cut(s) 281
Hpy8I GTNNAC 1 cut(s) 202
HpyCH4V TGCA 4 cut(s) 51, 168, 235, 249
HpyF10VI GCNNNNNNNGC 1 cut(s) 246
HpyF3I CTNAG 1 cut(s) 302
Hsp92II CATG 2 cut(s) 284, 298
HspAI GCGC 1 cut(s) 238
Ksp22I TGATCA 1 cut(s) 277
Kzo9I GATC 2 cut(s) 277, 283
LpnPI CCDG 4 cut(s) 67, 93, 178, 336
Lsp1109I GCAGC 3 cut(s) 227, 227, 247
MaeI CTAG 1 cut(s) 111
MalI GATC 2 cut(s) 279, 285
MboI GATC 2 cut(s) 277, 283
MboII GAAGA 2 cut(s) 11, 332
MhlI GDGCHC 1 cut(s) 96
MnlI CCTC 5 cut(s) 27, 65, 79, 182, 309
MspI CCGG 1 cut(s) 80
MspR9I CCNGG 1 cut(s) 80
Mva1269I GAATGC 1 cut(s) 249
MwoI GCNNNNNNNGC 1 cut(s) 246
NciI CCSGG 1 cut(s) 80
NdeII GATC 2 cut(s) 277, 283
NlaIII CATG 2 cut(s) 284, 298
NlaIV GGNNCC 1 cut(s) 102
NspI RCATGY 1 cut(s) 298
PagI TCATGA 1 cut(s) 280
PcsI WCGNNNNNNNCGW 3 cut(s) 158, 204, 324
PctI GAATGC 1 cut(s) 249
PfeI GAWTC 2 cut(s) 29, 38
PkrI GCNGC 3 cut(s) 217, 237, 242
PspN4I GGNNCC 1 cut(s) 102
PspPI GGNCC 1 cut(s) 100
PstI CTGCAG 1 cut(s) 237
RsaI GTAC 2 cut(s) 11, 115
RsaNI GTAC 2 cut(s) 10, 114
SatI GCNGC 3 cut(s) 216, 236, 241
Sau3AI GATC 2 cut(s) 277, 283
Sau96I GGNCC 1 cut(s) 100
ScaI AGTACT 1 cut(s) 115
ScrFI CCNGG 1 cut(s) 80
SduI GDGCHC 1 cut(s) 96
SetI ASST 4 cut(s) 11, 90, 177, 220
SfcI CTRYAG 1 cut(s) 233
SpeI ACTAGT 1 cut(s) 110
SsiI CCGC 1 cut(s) 69
SspI AATATT 1 cut(s) 157
SspMI CTAG 1 cut(s) 111
StyD4I CCNGG 1 cut(s) 78
StyI CCWWGG 1 cut(s) 96
TaqI TCGA 2 cut(s) 32, 258
TatI WGTACW 1 cut(s) 113
TfiI GAWTC 2 cut(s) 29, 38
TscAI CASTG 2 cut(s) 151, 280
TseI GCWGC 3 cut(s) 215, 235, 240
TspRI CASTG 2 cut(s) 151, 280
XceI RCATGY 1 cut(s) 298
XspI CTAG 1 cut(s) 111
ZrmI AGTACT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.