RchiOBHm_Chr2g0108601

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0017966
Physical Location & Seq
Forward (+)
19956338 .. 19956749
412 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48249

Sequence Viewer

Length: 324 bp
ATGGATTCAAAGAGTAGCACCAGTGTGTGCTATTGCGGAGGCTTCCCGGTTGAGGTGGAACCCAAGGCCCCAATGACTAGTACTGCTTCACAAAACATTACCACAAGCAGTGGGACGAATATTCCGATGTGCAAAAAGCTTGACGAGTTGGGAGGCTGGCTCGTTGACAGAGTGATAGCAGCTTTCTTTGGGTCTCTGCAGCGCTGCTCTTGTATTCACATCGATACCAAAGACGACACTGATCATGATCCTATTTACATGCCTCTTAGTAATGCCAAAAACGAAGATACCGACATAGAAATCCCAATAGCTACTGGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.56

Weight (kDa)

4.5

Isoelectric Point (pI)

52.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017966)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18110 FvH4_1g18141
prunus_persica Prupe.6G217400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0108601
rosa_laevigata RLG00000017680
rosa_roxburghii Rroxscaffold_2G00134990
rosa_samantha Rh2AG203600 Rh2BG216400 Rh2CG207500 Rh2DG210600
rosa_wichuraiana Rw2G016270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 36
AclWI GGATC 1 cut(s) 242
AfaI GTAC 1 cut(s) 82
AfeI AGCGCT 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 1 cut(s) 9
AhlI ACTAGT 1 cut(s) 77
AleI CACNNNNGTG 1 cut(s) 23
AluBI AGCT 3 cut(s) 139, 182, 311
AluI AGCT 3 cut(s) 139, 182, 311
Alw26I GTCTC 1 cut(s) 198
AlwI GGATC 1 cut(s) 242
Aor51HI AGCGCT 1 cut(s) 203
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 3 cut(s) 179, 199, 204
AspLEI GCGC 1 cut(s) 204
AspS9I GGNCC 1 cut(s) 67
AsuC2I CCSGG 1 cut(s) 47
BbvI GCAGC 3 cut(s) 191, 191, 211
BclI TGATCA 1 cut(s) 241
BcnI CCSGG 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 198
BcuI ACTAGT 1 cut(s) 77
BfaI CTAG 1 cut(s) 78
BfmI CTRYAG 1 cut(s) 197
BfoI RGCGCY 1 cut(s) 205
BisI GCNGC 3 cut(s) 180, 200, 205
BlsI GCNGC 3 cut(s) 181, 201, 206
BmcAI AGTACT 1 cut(s) 82
Bme1390I CCNGG 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 2 cut(s) 60, 69
BmrFI CCNGG 1 cut(s) 47
BplI GAGNNNNNCTC 2 cut(s) 144, 176
BpuMI CCSGG 1 cut(s) 47
Bsa29I ATCGAT 1 cut(s) 222
BsaBI GATNNNNATC 1 cut(s) 246
BsaI GGTCTC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 63
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse1I ACTGG 2 cut(s) 21, 319
Bse8I GATNNNNATC 1 cut(s) 246
BseCI ATCGAT 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 63
BseJI GATNNNNATC 1 cut(s) 246
BseLI CCNNNNNNNGG 1 cut(s) 52
BseNI ACTGG 2 cut(s) 21, 319
BseXI GCAGC 3 cut(s) 191, 191, 211
BshFI GGCC 1 cut(s) 68
BshVI ATCGAT 1 cut(s) 222
BsiSI CCGG 1 cut(s) 47
BslFI GGGAC 1 cut(s) 127
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 1 cut(s) 198
BsmFI GGGAC 1 cut(s) 127
BsnI GGCC 1 cut(s) 68
Bso31I GGTCTC 1 cut(s) 198
Bsp143I GATC 2 cut(s) 241, 247
BspACI CCGC 1 cut(s) 36
BspANI GGCC 1 cut(s) 68
BspDI ATCGAT 1 cut(s) 222
BspHI TCATGA 1 cut(s) 244
BspLI GGNNCC 2 cut(s) 60, 69
BspMAI CTGCAG 1 cut(s) 201
BspPI GGATC 1 cut(s) 242
BspTNI GGTCTC 1 cut(s) 198
BsrI ACTGG 2 cut(s) 21, 319
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 2 cut(s) 241, 247
BssT1I CCWWGG 1 cut(s) 63
BstC8I GCNNGC 1 cut(s) 158
BstDEI CTNAG 1 cut(s) 266
BstH2I RGCGCY 1 cut(s) 205
BstHHI GCGC 1 cut(s) 204
BstKTI GATC 2 cut(s) 244, 250
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 2 cut(s) 241, 247
BstNSI RCATGY 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 45
BstSFI CTRYAG 1 cut(s) 197
BstV1I GCAGC 3 cut(s) 191, 191, 211
Bsu15I ATCGAT 1 cut(s) 222
BsuRI GGCC 1 cut(s) 68
BsuTUI ATCGAT 1 cut(s) 222
BtsI GCAGTG 1 cut(s) 115
BtsIMutI CAGTG 3 cut(s) 28, 115, 237
Cac8I GCNNGC 1 cut(s) 158
CciI TCATGA 1 cut(s) 244
CfoI GCGC 1 cut(s) 204
Cfr13I GGNCC 1 cut(s) 67
ClaI ATCGAT 1 cut(s) 222
Csp6I GTAC 1 cut(s) 81
CviAII CATG 2 cut(s) 245, 259
CviJI RGCY 7 cut(s) 42, 68, 139, 156, 160, 182, 311
CviKI_1 RGCY 7 cut(s) 42, 68, 139, 156, 160, 182, 311
CviQI GTAC 1 cut(s) 81
DdeI CTNAG 1 cut(s) 266
DpnI GATC 2 cut(s) 243, 249
DpnII GATC 2 cut(s) 241, 247
Eco130I CCWWGG 1 cut(s) 63
Eco31I GGTCTC 1 cut(s) 198
Eco47III AGCGCT 1 cut(s) 203
EcoO109I RGGNCCY 1 cut(s) 67
EcoT14I CCWWGG 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 2 cut(s) 248, 262
FaiI YATR 4 cut(s) 246, 260, 296, 320
FaqI GGGAC 1 cut(s) 127
FatI CATG 2 cut(s) 244, 258
FbaI TGATCA 1 cut(s) 241
Fnu4HI GCNGC 3 cut(s) 180, 200, 205
Fsp4HI GCNGC 3 cut(s) 180, 200, 205
FspBI CTAG 1 cut(s) 78
GlaI GCGC 1 cut(s) 203
GluI GCNGC 3 cut(s) 180, 200, 205
HaeII RGCGCY 1 cut(s) 205
HaeIII GGCC 1 cut(s) 68
HapII CCGG 1 cut(s) 47
HhaI GCGC 1 cut(s) 204
Hin1II CATG 2 cut(s) 248, 262
Hin6I GCGC 1 cut(s) 202
HinP1I GCGC 1 cut(s) 202
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 1 cut(s) 5
HpaII CCGG 1 cut(s) 47
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 1 cut(s) 245
Hpy8I GTNNAC 1 cut(s) 166
HpyCH4V TGCA 2 cut(s) 132, 199
HpyF3I CTNAG 1 cut(s) 266
Hsp92II CATG 2 cut(s) 248, 262
HspAI GCGC 1 cut(s) 202
Ksp22I TGATCA 1 cut(s) 241
Kzo9I GATC 2 cut(s) 241, 247
LpnPI CCDG 4 cut(s) 34, 60, 142, 300
Lsp1109I GCAGC 3 cut(s) 191, 191, 211
MaeI CTAG 1 cut(s) 78
MalI GATC 2 cut(s) 243, 249
MboI GATC 2 cut(s) 241, 247
MboII GAAGA 1 cut(s) 296
MnlI CCTC 4 cut(s) 32, 46, 146, 273
MslI CAYNNNNRTG 1 cut(s) 23
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 1 cut(s) 47
NciI CCSGG 1 cut(s) 47
NdeII GATC 2 cut(s) 241, 247
NlaIII CATG 2 cut(s) 248, 262
NlaIV GGNNCC 2 cut(s) 60, 69
NspI RCATGY 1 cut(s) 262
OliI CACNNNNGTG 1 cut(s) 23
PagI TCATGA 1 cut(s) 244
PcsI WCGNNNNNNNCGW 2 cut(s) 122, 288
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 3 cut(s) 181, 201, 206
PspN4I GGNNCC 2 cut(s) 60, 69
PspPI GGNCC 1 cut(s) 67
PstI CTGCAG 1 cut(s) 201
RsaI GTAC 1 cut(s) 82
RsaNI GTAC 1 cut(s) 81
RseI CAYNNNNRTG 1 cut(s) 23
SatI GCNGC 3 cut(s) 180, 200, 205
Sau3AI GATC 2 cut(s) 241, 247
Sau96I GGNCC 1 cut(s) 67
ScaI AGTACT 1 cut(s) 82
ScrFI CCNGG 1 cut(s) 47
SetI ASST 4 cut(s) 57, 141, 184, 313
SfcI CTRYAG 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 23
SpeI ACTAGT 1 cut(s) 77
SsiI CCGC 1 cut(s) 36
SspI AATATT 1 cut(s) 121
SspMI CTAG 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 45
StyI CCWWGG 1 cut(s) 63
TaqI TCGA 1 cut(s) 222
TatI WGTACW 1 cut(s) 80
TfiI GAWTC 1 cut(s) 5
TscAI CASTG 3 cut(s) 28, 115, 244
TseI GCWGC 3 cut(s) 179, 199, 204
TspRI CASTG 3 cut(s) 28, 115, 244
XceI RCATGY 1 cut(s) 262
XspI CTAG 1 cut(s) 78
ZrmI AGTACT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.