Rh2BG216400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0017966
Physical Location & Seq
Forward (+)
20597270 .. 20597626
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG216400.1

Sequence Viewer

Length: 357 bp
ATGGATAGGTACTATCCTCTTCGTTCCGATTCGATGGATTCAAAGAGTTGCACCAGTGTGTGCTATTGCGGAGGCTTCCCGGTTGAGGTTGAACCCAAGGCCCCGATGACTAGTACTGCTTCACAAAACATTACCACAAGCAGTGGGGCGAATATTCCGATGTGCAAAAAGCTTGACGAGTTGGGAGGCTGGCTCGTTGACAGCGTGATAGCAGCTTTCTTTGGGTCTCTGCAGCGCTGCTCTTGTATTCACATCGATACCAAAGACGACACTGATCATGATCCTATTTACATGCCTCTTAGTAATGCCAACAACGAAGATACCGACATAGAAATCCCAATAGCTACTGGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.85

Weight (kDa)

4.34

Isoelectric Point (pI)

63.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017966)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18110 FvH4_1g18141
prunus_persica Prupe.6G217400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0108601
rosa_laevigata RLG00000017680
rosa_roxburghii Rroxscaffold_2G00134990
rosa_samantha Rh2AG203600 Rh2BG216400 Rh2CG207500 Rh2DG210600
rosa_wichuraiana Rw2G016270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 69
AclWI GGATC 1 cut(s) 275
AfaI GTAC 2 cut(s) 11, 115
AfeI AGCGCT 1 cut(s) 236
AfiI CCNNNNNNNGG 1 cut(s) 85
AgsI TTSAA 2 cut(s) 42, 92
AhlI ACTAGT 1 cut(s) 110
AleI CACNNNNGTG 1 cut(s) 56
AluBI AGCT 3 cut(s) 172, 215, 344
AluI AGCT 3 cut(s) 172, 215, 344
Alw26I GTCTC 1 cut(s) 231
AlwI GGATC 1 cut(s) 275
Aor51HI AGCGCT 1 cut(s) 236
AoxI GGCC 1 cut(s) 99
ApeKI GCWGC 3 cut(s) 212, 232, 237
AspLEI GCGC 1 cut(s) 237
AspS9I GGNCC 1 cut(s) 100
AsuC2I CCSGG 1 cut(s) 80
BbvI GCAGC 3 cut(s) 224, 224, 244
BccI CCATC 1 cut(s) 28
BclI TGATCA 1 cut(s) 274
BcnI CCSGG 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 231
BcuI ACTAGT 1 cut(s) 110
BfaI CTAG 1 cut(s) 111
BfmI CTRYAG 1 cut(s) 230
BfoI RGCGCY 1 cut(s) 238
BisI GCNGC 3 cut(s) 213, 233, 238
BlsI GCNGC 3 cut(s) 214, 234, 239
BmcAI AGTACT 1 cut(s) 115
Bme1390I CCNGG 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 100
BmiI GGNNCC 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 80
BplI GAGNNNNNCTC 2 cut(s) 177, 209
BpuMI CCSGG 1 cut(s) 80
Bsa29I ATCGAT 1 cut(s) 255
BsaBI GATNNNNATC 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 96
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse1I ACTGG 2 cut(s) 54, 352
Bse8I GATNNNNATC 1 cut(s) 279
BseCI ATCGAT 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 96
BseJI GATNNNNATC 1 cut(s) 279
BseLI CCNNNNNNNGG 1 cut(s) 85
BseNI ACTGG 2 cut(s) 54, 352
BseXI GCAGC 3 cut(s) 224, 224, 244
BshFI GGCC 1 cut(s) 101
BshVI ATCGAT 1 cut(s) 255
BsiSI CCGG 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 231
BsnI GGCC 1 cut(s) 101
Bso31I GGTCTC 1 cut(s) 231
Bsp143I GATC 2 cut(s) 274, 280
BspACI CCGC 1 cut(s) 69
BspANI GGCC 1 cut(s) 101
BspDI ATCGAT 1 cut(s) 255
BspHI TCATGA 1 cut(s) 277
BspLI GGNNCC 1 cut(s) 102
BspMAI CTGCAG 1 cut(s) 234
BspPI GGATC 1 cut(s) 275
BspTNI GGTCTC 1 cut(s) 231
BsrI ACTGG 2 cut(s) 54, 352
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 2 cut(s) 274, 280
BssT1I CCWWGG 1 cut(s) 96
Bst6I CTCTTC 1 cut(s) 24
BstC8I GCNNGC 1 cut(s) 191
BstDEI CTNAG 1 cut(s) 299
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 1 cut(s) 237
BstKTI GATC 2 cut(s) 277, 283
BstMAI GTCTC 1 cut(s) 231
BstMBI GATC 2 cut(s) 274, 280
BstNSI RCATGY 1 cut(s) 295
BstSCI CCNGG 1 cut(s) 78
BstSFI CTRYAG 1 cut(s) 230
BstV1I GCAGC 3 cut(s) 224, 224, 244
Bsu15I ATCGAT 1 cut(s) 255
BsuRI GGCC 1 cut(s) 101
BsuTUI ATCGAT 1 cut(s) 255
BtsI GCAGTG 1 cut(s) 148
BtsIMutI CAGTG 3 cut(s) 61, 148, 270
Cac8I GCNNGC 1 cut(s) 191
CciI TCATGA 1 cut(s) 277
CfoI GCGC 1 cut(s) 237
Cfr13I GGNCC 1 cut(s) 100
ClaI ATCGAT 1 cut(s) 255
Csp6I GTAC 2 cut(s) 10, 114
CviAII CATG 2 cut(s) 278, 292
CviJI RGCY 7 cut(s) 75, 101, 172, 189, 193, 215, 344
CviKI_1 RGCY 7 cut(s) 75, 101, 172, 189, 193, 215, 344
CviQI GTAC 2 cut(s) 10, 114
DdeI CTNAG 1 cut(s) 299
DpnI GATC 2 cut(s) 276, 282
DpnII GATC 2 cut(s) 274, 280
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 96
Eco31I GGTCTC 1 cut(s) 231
Eco47III AGCGCT 1 cut(s) 236
EcoO109I RGGNCCY 1 cut(s) 100
EcoT14I CCWWGG 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 2 cut(s) 281, 295
FaiI YATR 4 cut(s) 279, 293, 329, 353
FatI CATG 2 cut(s) 277, 291
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 3 cut(s) 213, 233, 238
Fsp4HI GCNGC 3 cut(s) 213, 233, 238
FspBI CTAG 1 cut(s) 111
GlaI GCGC 1 cut(s) 236
GluI GCNGC 3 cut(s) 213, 233, 238
HaeII RGCGCY 1 cut(s) 238
HaeIII GGCC 1 cut(s) 101
HapII CCGG 1 cut(s) 80
HhaI GCGC 1 cut(s) 237
Hin1II CATG 2 cut(s) 281, 295
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 2 cut(s) 29, 38
HpaII CCGG 1 cut(s) 80
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 2 cut(s) 28, 159
Hpy188III TCNNGA 1 cut(s) 278
Hpy8I GTNNAC 1 cut(s) 199
HpyCH4V TGCA 3 cut(s) 51, 165, 232
HpyF3I CTNAG 1 cut(s) 299
Hsp92II CATG 2 cut(s) 281, 295
HspAI GCGC 1 cut(s) 235
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 2 cut(s) 274, 280
LpnPI CCDG 4 cut(s) 67, 93, 175, 333
Lsp1109I GCAGC 3 cut(s) 224, 224, 244
MaeI CTAG 1 cut(s) 111
MalI GATC 2 cut(s) 276, 282
MboI GATC 2 cut(s) 274, 280
MboII GAAGA 2 cut(s) 11, 329
MnlI CCTC 5 cut(s) 27, 65, 79, 179, 306
MslI CAYNNNNRTG 1 cut(s) 56
MspI CCGG 1 cut(s) 80
MspR9I CCNGG 1 cut(s) 80
NciI CCSGG 1 cut(s) 80
NdeII GATC 2 cut(s) 274, 280
NlaIII CATG 2 cut(s) 281, 295
NlaIV GGNNCC 1 cut(s) 102
NspI RCATGY 1 cut(s) 295
OliI CACNNNNGTG 1 cut(s) 56
PagI TCATGA 1 cut(s) 277
PcsI WCGNNNNNNNCGW 2 cut(s) 201, 321
PfeI GAWTC 2 cut(s) 29, 38
PkrI GCNGC 3 cut(s) 214, 234, 239
PspN4I GGNNCC 1 cut(s) 102
PspPI GGNCC 1 cut(s) 100
PstI CTGCAG 1 cut(s) 234
RsaI GTAC 2 cut(s) 11, 115
RsaNI GTAC 2 cut(s) 10, 114
RseI CAYNNNNRTG 1 cut(s) 56
SatI GCNGC 3 cut(s) 213, 233, 238
Sau3AI GATC 2 cut(s) 274, 280
Sau96I GGNCC 1 cut(s) 100
ScaI AGTACT 1 cut(s) 115
ScrFI CCNGG 1 cut(s) 80
SetI ASST 5 cut(s) 11, 90, 174, 217, 346
SfcI CTRYAG 1 cut(s) 230
SmiMI CAYNNNNRTG 1 cut(s) 56
SpeI ACTAGT 1 cut(s) 110
SsiI CCGC 1 cut(s) 69
SspI AATATT 1 cut(s) 154
SspMI CTAG 1 cut(s) 111
StyD4I CCNGG 1 cut(s) 78
StyI CCWWGG 1 cut(s) 96
TaqI TCGA 2 cut(s) 32, 255
TatI WGTACW 1 cut(s) 113
TfiI GAWTC 2 cut(s) 29, 38
TscAI CASTG 3 cut(s) 61, 148, 277
TseI GCWGC 3 cut(s) 212, 232, 237
TspRI CASTG 3 cut(s) 61, 148, 277
XceI RCATGY 1 cut(s) 295
XspI CTAG 1 cut(s) 111
ZrmI AGTACT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.