Prupe.6G217400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0017966
Physical Location & Seq
Reverse (-)
22433349 .. 22434397
1049 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G217400.1

Sequence Viewer

Length: 387 bp
ATGGCTAGCTACCATCCTCTTCATTCCCGATCAATGGATTCCATAAGCAATCCAAAAGGCTGCACCAACTTGTGCTATTTCAGAGGCTGTGCAGACGCCAATGCGGACGCCGGGCCCAAAGAAATGACAGCATCACCAAACACAAGCTGTGGAGTTCCTCCCGTCTGCAAAAAGCTCGACGGATTGGCAGCCTGGCTTTTCCACTCCGTGGCAGAAGCTTTCTTTGCATCTCTTCTACGCTGCTCTTGCATTCACATCGACACAAAAGATGACCCTGATGATATTTTCTACATCCCTCTTAATAGGAGCCAGGAGGAGGAGGAGAAGGAGAAGGAGGATGGTGGCATTCAAATCTCAATAGCAACTGTGGATTCTGAAAACTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.02

Weight (kDa)

4.71

Isoelectric Point (pI)

53.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017966)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18110 FvH4_1g18141
prunus_persica Prupe.6G217400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0108601
rosa_laevigata RLG00000017680
rosa_roxburghii Rroxscaffold_2G00134990
rosa_samantha Rh2AG203600 Rh2BG216400 Rh2CG207500 Rh2DG210600
rosa_wichuraiana Rw2G016270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 208
AciI CCGC 1 cut(s) 104
AcyI GRCGYC 2 cut(s) 96, 108
AdeI CACNNNGTG 1 cut(s) 208
AfiI CCNNNNNNNGG 3 cut(s) 34, 208, 316
AgsI TTSAA 1 cut(s) 350
AjnI CCWGG 2 cut(s) 191, 309
AluBI AGCT 4 cut(s) 9, 147, 175, 218
AluI AGCT 4 cut(s) 9, 147, 175, 218
AlwNI CAGNNNCTG 1 cut(s) 87
AoxI GGCC 1 cut(s) 113
ApaI GGGCCC 1 cut(s) 117
ApeKI GCWGC 3 cut(s) 60, 188, 240
AspS9I GGNCC 2 cut(s) 113, 114
AsuC2I CCSGG 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 126
AsuNHI GCTAGC 1 cut(s) 5
BaeGI GKGCMC 1 cut(s) 117
BanII GRGCYC 1 cut(s) 117
BbvI GCAGC 3 cut(s) 47, 200, 227
BccI CCATC 2 cut(s) 21, 332
BcgI CGANNNNNNTGC 4 cut(s) 157, 191, 238, 272
BciT130I CCWGG 2 cut(s) 193, 311
BcnI CCSGG 1 cut(s) 112
BfaI CTAG 1 cut(s) 6
BisI GCNGC 3 cut(s) 61, 189, 241
BlsI GCNGC 3 cut(s) 62, 190, 242
Bme1390I CCNGG 3 cut(s) 112, 193, 311
BmgT120I GGNCC 2 cut(s) 113, 114
BmiI GGNNCC 2 cut(s) 115, 308
BmrFI CCNGG 3 cut(s) 112, 193, 311
BmsI GCATC 2 cut(s) 140, 236
BmtI GCTAGC 1 cut(s) 9
BpuMI CCSGG 1 cut(s) 112
BsaHI GRCGYC 2 cut(s) 96, 108
BsaJI CCNNGG 1 cut(s) 207
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 208, 316
BseBI CCWGG 2 cut(s) 193, 311
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 3 cut(s) 13, 291, 343
BseLI CCNNNNNNNGG 3 cut(s) 34, 208, 316
BseRI GAGGAG 3 cut(s) 329, 332, 335
BseSI GKGCMC 1 cut(s) 117
BseXI GCAGC 3 cut(s) 47, 200, 227
BsgI GTGCAG 2 cut(s) 46, 111
BshFI GGCC 1 cut(s) 115
BsiSI CCGG 1 cut(s) 111
BslI CCNNNNNNNGG 3 cut(s) 34, 208, 316
BsmI GAATGC 2 cut(s) 249, 345
BsnI GGCC 1 cut(s) 115
Bsp120I GGGCCC 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 117
Bsp143I GATC 1 cut(s) 29
BspACI CCGC 1 cut(s) 104
BspANI GGCC 1 cut(s) 115
BspLI GGNNCC 2 cut(s) 115, 308
BspOI GCTAGC 1 cut(s) 9
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 1 cut(s) 29
BssNI GRCGYC 2 cut(s) 96, 108
Bst2UI CCWGG 2 cut(s) 193, 311
Bst4CI ACNGT 1 cut(s) 367
Bst6I CTCTTC 2 cut(s) 24, 237
BstACI GRCGYC 2 cut(s) 96, 108
BstC8I GCNNGC 1 cut(s) 7
BstDSI CCRYGG 1 cut(s) 207
BstF5I GGATG 3 cut(s) 13, 291, 343
BstKTI GATC 1 cut(s) 32
BstMBI GATC 1 cut(s) 29
BstMWI GCNNNNNNNGC 2 cut(s) 224, 246
BstNI CCWGG 2 cut(s) 193, 311
BstSCI CCNGG 3 cut(s) 110, 191, 309
BstSLI GKGCMC 1 cut(s) 117
BstV1I GCAGC 3 cut(s) 47, 200, 227
BsuRI GGCC 1 cut(s) 115
BtgI CCRYGG 1 cut(s) 207
BtsCI GGATG 3 cut(s) 13, 291, 343
Cac8I GCNNGC 1 cut(s) 7
CaiI CAGNNNCTG 1 cut(s) 87
Cfr13I GGNCC 2 cut(s) 113, 114
CseI GACGC 2 cut(s) 104, 116
DpnI GATC 1 cut(s) 31
DpnII GATC 1 cut(s) 29
DraIII CACNNNGTG 1 cut(s) 208
Eam1104I CTCTTC 2 cut(s) 24, 237
EarI CTCTTC 2 cut(s) 24, 237
Eco24I GRGCYC 1 cut(s) 117
EcoRII CCWGG 2 cut(s) 191, 309
EcoT38I GRGCYC 1 cut(s) 117
FaiI YATR 1 cut(s) 44
Fnu4HI GCNGC 3 cut(s) 61, 189, 241
FokI GGATG 2 cut(s) 278, 350
FriOI GRGCYC 1 cut(s) 117
Fsp4HI GCNGC 3 cut(s) 61, 189, 241
FspBI CTAG 1 cut(s) 6
GluI GCNGC 3 cut(s) 61, 189, 241
HaeIII GGCC 1 cut(s) 115
HapII CCGG 1 cut(s) 111
HgaI GACGC 2 cut(s) 104, 116
Hin1I GRCGYC 2 cut(s) 96, 108
HindIII AAGCTT 1 cut(s) 216
HinfI GANTC 2 cut(s) 38, 371
HpaII CCGG 1 cut(s) 111
HphI GGTGA 1 cut(s) 126
Hpy188I TCNGA 2 cut(s) 83, 376
Hpy188III TCNNGA 1 cut(s) 27
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 2 cut(s) 319, 325
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4V TGCA 5 cut(s) 63, 92, 168, 227, 249
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 246
Hsp92I GRCGYC 2 cut(s) 96, 108
Kzo9I GATC 1 cut(s) 29
LmnI GCTCC 1 cut(s) 306
LpnPI CCDG 6 cut(s) 124, 178, 205, 288, 296, 323
Lsp1109I GCAGC 3 cut(s) 47, 200, 227
LweI GCATC 2 cut(s) 140, 236
MaeI CTAG 1 cut(s) 6
MalI GATC 1 cut(s) 31
MboI GATC 1 cut(s) 29
MboII GAAGA 2 cut(s) 11, 224
MhlI GDGCHC 1 cut(s) 117
MnlI CCTC 8 cut(s) 27, 77, 168, 306, 307, 310, 313, 328
MseI TTAA 2 cut(s) 300, 385
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 3 cut(s) 112, 193, 311
Mva1269I GAATGC 2 cut(s) 249, 345
MvaI CCWGG 2 cut(s) 193, 311
MwoI GCNNNNNNNGC 2 cut(s) 224, 246
NciI CCSGG 1 cut(s) 112
NdeII GATC 1 cut(s) 29
NheI GCTAGC 1 cut(s) 5
NlaIV GGNNCC 2 cut(s) 115, 308
PctI GAATGC 2 cut(s) 249, 345
PfeI GAWTC 2 cut(s) 38, 371
PflMI CCANNNNNTGG 1 cut(s) 208
PkrI GCNGC 3 cut(s) 62, 190, 242
Psp6I CCWGG 2 cut(s) 191, 309
PspGI CCWGG 2 cut(s) 191, 309
PspN4I GGNNCC 2 cut(s) 115, 308
PspOMI GGGCCC 1 cut(s) 113
PspPI GGNCC 2 cut(s) 113, 114
PstNI CAGNNNCTG 1 cut(s) 87
SaqAI TTAA 2 cut(s) 300, 385
SatI GCNGC 3 cut(s) 61, 189, 241
Sau3AI GATC 1 cut(s) 29
Sau96I GGNCC 2 cut(s) 113, 114
ScrFI CCNGG 3 cut(s) 112, 193, 311
SduI GDGCHC 1 cut(s) 117
SetI ASST 4 cut(s) 11, 149, 177, 220
SfaNI GCATC 2 cut(s) 140, 236
SsiI CCGC 1 cut(s) 104
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 3 cut(s) 110, 191, 309
TaaI ACNGT 1 cut(s) 367
TaqI TCGA 2 cut(s) 177, 258
TfiI GAWTC 2 cut(s) 38, 371
Tru1I TTAA 2 cut(s) 300, 385
Tru9I TTAA 2 cut(s) 300, 385
TseI GCWGC 3 cut(s) 60, 188, 240
TspDTI ATGAA 1 cut(s) 11
TspGWI ACGGA 2 cut(s) 195, 196
Van91I CCANNNNNTGG 1 cut(s) 208
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.