Rh2AG203600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0017966
Physical Location & Seq
Forward (+)
20562105 .. 20567597
5493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG203600.1

Sequence Viewer

Length: 648 bp
ATGGATAGGTACTATCCTCTTCGTTCCGATTCGATGGATTCAAAGAGTTGCACCAGTGTGTGCTATTGCGGAGGCTTCCCGGTTGAGGTTGAGCCCAAGGCCCCGATGACTAGTACTGCTTCACAAAACATTACCGCAAGCAGTGGGACGAATATTCCGATGTGCAAAAAGCTTGACGAGTTGGGAGGCTGGCTCGTTGACAGCGTGATAGCAGCTTTCTTTGGGTCTCTGCAGCGCTGCTCTTGCATTCACATCGATACCAAAGACGACACTGATCATGATCCTATTTACATGCCTCTTAGTAATGCCAACAACGAAGATACCGACATAGAAATCCCAATAGCTACTGAGATGGCAGCTGAGAATGCCAAGAGAGGGATAAAGAGGTTCTTGGAACAATCCACAAGTGACCGAGTTGATCAAGGAGAATCTAAATGTAGTTGTGTCAAATCAAATAGATTGAAAACAATGTTTCATCCAGAAATTGCTGGAGGATCTAATGAATGTAAAGATGGAAGCTTTACGGGCTACTTTGTATCTGGCCTGGATTCATTGGTGGAATTAAATGAAAATAATTCTTTCCAACACCTCCCAACTGATGATGGACATAGCAATAACTTACAAGGATATGGAGACCGAAGGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

23.56

Weight (kDa)

4.77

Isoelectric Point (pI)

53.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017966)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18110 FvH4_1g18141
prunus_persica Prupe.6G217400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0108601
rosa_laevigata RLG00000017680
rosa_roxburghii Rroxscaffold_2G00134990
rosa_samantha Rh2AG203600 Rh2BG216400 Rh2CG207500 Rh2DG210600
rosa_wichuraiana Rw2G016270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 69, 135
AclWI GGATC 2 cut(s) 275, 502
AfaI GTAC 2 cut(s) 11, 115
AfeI AGCGCT 1 cut(s) 236
AfiI CCNNNNNNNGG 2 cut(s) 85, 375
AgsI TTSAA 2 cut(s) 42, 463
AhlI ACTAGT 1 cut(s) 110
AjnI CCWGG 1 cut(s) 543
AleI CACNNNNGTG 1 cut(s) 56
AluBI AGCT 5 cut(s) 172, 215, 344, 359, 519
AluI AGCT 5 cut(s) 172, 215, 344, 359, 519
Alw26I GTCTC 2 cut(s) 231, 627
AlwI GGATC 2 cut(s) 275, 502
Aor51HI AGCGCT 1 cut(s) 236
AoxI GGCC 2 cut(s) 99, 541
ApeKI GCWGC 4 cut(s) 212, 232, 237, 356
AspLEI GCGC 1 cut(s) 237
AspS9I GGNCC 1 cut(s) 100
AsuC2I CCSGG 1 cut(s) 80
BanII GRGCYC 1 cut(s) 96
BbvI GCAGC 4 cut(s) 224, 224, 244, 368
BccI CCATC 4 cut(s) 28, 346, 506, 596
BcgI CGANNNNNNTGC 2 cut(s) 235, 269
BciT130I CCWGG 1 cut(s) 545
BclI TGATCA 2 cut(s) 274, 418
BcnI CCSGG 1 cut(s) 80
BcoDI GTCTC 2 cut(s) 231, 627
BcuI ACTAGT 1 cut(s) 110
BfaI CTAG 1 cut(s) 111
BfmI CTRYAG 1 cut(s) 230
BfoI RGCGCY 1 cut(s) 238
BisI GCNGC 4 cut(s) 213, 233, 238, 357
BlsI GCNGC 4 cut(s) 214, 234, 239, 358
BmcAI AGTACT 1 cut(s) 115
Bme1390I CCNGG 2 cut(s) 80, 545
BmgT120I GGNCC 1 cut(s) 100
BmiI GGNNCC 1 cut(s) 102
BmrFI CCNGG 2 cut(s) 80, 545
BplI GAGNNNNNCTC 2 cut(s) 177, 209
BpmI CTGGAG 1 cut(s) 510
BpuMI CCSGG 1 cut(s) 80
Bsa29I ATCGAT 1 cut(s) 255
BsaBI GATNNNNATC 1 cut(s) 279
BsaI GGTCTC 2 cut(s) 231, 627
BsaJI CCNNGG 1 cut(s) 96
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 375
Bse1I ACTGG 1 cut(s) 54
Bse8I GATNNNNATC 1 cut(s) 279
BseBI CCWGG 1 cut(s) 545
BseCI ATCGAT 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 1 cut(s) 475
BseJI GATNNNNATC 1 cut(s) 279
BseLI CCNNNNNNNGG 2 cut(s) 85, 375
BseMII CTCAG 2 cut(s) 339, 351
BseNI ACTGG 1 cut(s) 54
BseXI GCAGC 4 cut(s) 224, 224, 244, 368
BshFI GGCC 2 cut(s) 101, 543
BshVI ATCGAT 1 cut(s) 255
BsiSI CCGG 1 cut(s) 80
BslFI GGGAC 1 cut(s) 160
BslI CCNNNNNNNGG 2 cut(s) 85, 375
BsmAI GTCTC 2 cut(s) 231, 627
BsmFI GGGAC 1 cut(s) 160
BsmI GAATGC 2 cut(s) 246, 370
BsnI GGCC 2 cut(s) 101, 543
Bso31I GGTCTC 2 cut(s) 231, 627
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 4 cut(s) 274, 280, 418, 494
BspACI CCGC 2 cut(s) 69, 135
BspANI GGCC 2 cut(s) 101, 543
BspCNI CTCAG 2 cut(s) 340, 352
BspDI ATCGAT 1 cut(s) 255
BspHI TCATGA 1 cut(s) 277
BspLI GGNNCC 1 cut(s) 102
BspMAI CTGCAG 1 cut(s) 234
BspPI GGATC 2 cut(s) 275, 502
BspTNI GGTCTC 2 cut(s) 231, 627
BsrI ACTGG 1 cut(s) 54
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 4 cut(s) 274, 280, 418, 494
BssT1I CCWWGG 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 545
Bst6I CTCTTC 1 cut(s) 24
BstC8I GCNNGC 2 cut(s) 139, 191
BstDEI CTNAG 3 cut(s) 299, 348, 360
BstF5I GGATG 1 cut(s) 475
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 1 cut(s) 237
BstKTI GATC 4 cut(s) 277, 283, 421, 497
BstMAI GTCTC 2 cut(s) 231, 627
BstMBI GATC 4 cut(s) 274, 280, 418, 494
BstMWI GCNNNNNNNGC 3 cut(s) 243, 365, 525
BstNI CCWGG 1 cut(s) 545
BstNSI RCATGY 1 cut(s) 295
BstSCI CCNGG 2 cut(s) 78, 543
BstSFI CTRYAG 1 cut(s) 230
BstV1I GCAGC 4 cut(s) 224, 224, 244, 368
BstX2I RGATCY 1 cut(s) 494
BstYI RGATCY 1 cut(s) 494
Bsu15I ATCGAT 1 cut(s) 255
BsuRI GGCC 2 cut(s) 101, 543
BsuTUI ATCGAT 1 cut(s) 255
BtsCI GGATG 1 cut(s) 475
BtsI GCAGTG 1 cut(s) 148
BtsIMutI CAGTG 3 cut(s) 61, 148, 270
Cac8I GCNNGC 2 cut(s) 139, 191
CciI TCATGA 1 cut(s) 277
CfoI GCGC 1 cut(s) 237
Cfr13I GGNCC 1 cut(s) 100
ClaI ATCGAT 1 cut(s) 255
Csp6I GTAC 2 cut(s) 10, 114
CviAII CATG 2 cut(s) 278, 292
CviQI GTAC 2 cut(s) 10, 114
DdeI CTNAG 3 cut(s) 299, 348, 360
DpnI GATC 4 cut(s) 276, 282, 420, 496
DpnII GATC 4 cut(s) 274, 280, 418, 494
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 96
Eco24I GRGCYC 1 cut(s) 96
Eco31I GGTCTC 2 cut(s) 231, 627
Eco47III AGCGCT 1 cut(s) 236
EcoO109I RGGNCCY 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 543
EcoT14I CCWWGG 1 cut(s) 96
EcoT38I GRGCYC 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 2 cut(s) 281, 295
FaiI YATR 5 cut(s) 279, 293, 329, 609, 630
FalI AAGNNNNNCTT 2 cut(s) 374, 406
FaqI GGGAC 1 cut(s) 160
FatI CATG 2 cut(s) 277, 291
FbaI TGATCA 2 cut(s) 274, 418
Fnu4HI GCNGC 4 cut(s) 213, 233, 238, 357
FokI GGATG 1 cut(s) 462
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 4 cut(s) 213, 233, 238, 357
FspBI CTAG 1 cut(s) 111
GlaI GCGC 1 cut(s) 236
GluI GCNGC 4 cut(s) 213, 233, 238, 357
GsuI CTGGAG 1 cut(s) 510
HaeII RGCGCY 1 cut(s) 238
HaeIII GGCC 2 cut(s) 101, 543
HapII CCGG 1 cut(s) 80
HhaI GCGC 1 cut(s) 237
Hin1II CATG 2 cut(s) 281, 295
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HindIII AAGCTT 2 cut(s) 170, 517
HinfI GANTC 4 cut(s) 29, 38, 428, 548
HpaII CCGG 1 cut(s) 80
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 2 cut(s) 28, 159
Hpy188III TCNNGA 2 cut(s) 278, 479
Hpy8I GTNNAC 1 cut(s) 199
HpyAV CCTTC 1 cut(s) 633
HpyCH4V TGCA 4 cut(s) 51, 165, 232, 246
HpyF10VI GCNNNNNNNGC 3 cut(s) 243, 365, 525
HpyF3I CTNAG 3 cut(s) 299, 348, 360
Hsp92II CATG 2 cut(s) 281, 295
HspAI GCGC 1 cut(s) 235
Ksp22I TGATCA 2 cut(s) 274, 418
Kzo9I GATC 4 cut(s) 274, 280, 418, 494
LpnPI CCDG 8 cut(s) 67, 93, 175, 474, 492, 525, 530, 557
Lsp1109I GCAGC 4 cut(s) 224, 224, 244, 368
MaeI CTAG 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 407
MalI GATC 4 cut(s) 276, 282, 420, 496
MboI GATC 4 cut(s) 274, 280, 418, 494
MboII GAAGA 2 cut(s) 11, 329
MflI RGATCY 1 cut(s) 494
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 3 cut(s) 483, 560, 574
MmeI TCCRAC 1 cut(s) 607
MnlI CCTC 9 cut(s) 27, 65, 79, 179, 306, 368, 378, 485, 599
MseI TTAA 1 cut(s) 563
MslI CAYNNNNRTG 1 cut(s) 56
MspA1I CMGCKG 1 cut(s) 359
MspI CCGG 1 cut(s) 80
MspR9I CCNGG 2 cut(s) 80, 545
Mva1269I GAATGC 2 cut(s) 246, 370
MvaI CCWGG 1 cut(s) 545
MwoI GCNNNNNNNGC 3 cut(s) 243, 365, 525
NciI CCSGG 1 cut(s) 80
NdeII GATC 4 cut(s) 274, 280, 418, 494
NlaIII CATG 2 cut(s) 281, 295
NlaIV GGNNCC 1 cut(s) 102
NmuCI GTSAC 1 cut(s) 407
NspI RCATGY 1 cut(s) 295
OliI CACNNNNGTG 1 cut(s) 56
PagI TCATGA 1 cut(s) 277
PcsI WCGNNNNNNNCGW 3 cut(s) 155, 201, 321
PctI GAATGC 2 cut(s) 246, 370
PfeI GAWTC 4 cut(s) 29, 38, 428, 548
PkrI GCNGC 4 cut(s) 214, 234, 239, 358
Psp6I CCWGG 1 cut(s) 543
PspGI CCWGG 1 cut(s) 543
PspN4I GGNNCC 1 cut(s) 102
PspPI GGNCC 1 cut(s) 100
PstI CTGCAG 1 cut(s) 234
PsuI RGATCY 1 cut(s) 494
PvuII CAGCTG 1 cut(s) 359
RsaI GTAC 2 cut(s) 11, 115
RsaNI GTAC 2 cut(s) 10, 114
RseI CAYNNNNRTG 1 cut(s) 56
SaqAI TTAA 1 cut(s) 563
SatI GCNGC 4 cut(s) 213, 233, 238, 357
Sau3AI GATC 4 cut(s) 274, 280, 418, 494
Sau96I GGNCC 1 cut(s) 100
ScaI AGTACT 1 cut(s) 115
ScrFI CCNGG 2 cut(s) 80, 545
SduI GDGCHC 1 cut(s) 96
SetI ASST 9 cut(s) 11, 90, 174, 217, 346, 361, 389, 521, 591
SfcI CTRYAG 1 cut(s) 230
SmiMI CAYNNNNRTG 1 cut(s) 56
SpeI ACTAGT 1 cut(s) 110
Sse9I AATT 3 cut(s) 483, 560, 574
SsiI CCGC 2 cut(s) 69, 135
SspI AATATT 1 cut(s) 154
SspMI CTAG 1 cut(s) 111
StyD4I CCNGG 2 cut(s) 78, 543
StyI CCWWGG 1 cut(s) 96
TaqI TCGA 2 cut(s) 32, 255
TaqII GACCGA 1 cut(s) 426
TasI AATT 3 cut(s) 483, 560, 574
TatI WGTACW 1 cut(s) 113
TfiI GAWTC 4 cut(s) 29, 38, 428, 548
Tru1I TTAA 1 cut(s) 563
Tru9I TTAA 1 cut(s) 563
TscAI CASTG 3 cut(s) 61, 148, 277
TseFI GTSAC 1 cut(s) 407
TseI GCWGC 4 cut(s) 212, 232, 237, 356
Tsp45I GTSAC 1 cut(s) 407
TspDTI ATGAA 4 cut(s) 464, 516, 540, 582
TspRI CASTG 3 cut(s) 61, 148, 277
XceI RCATGY 1 cut(s) 295
XspI CTAG 1 cut(s) 111
ZrmI AGTACT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.