Rw2G016270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0017966
Physical Location & Seq
Forward (+)
19075821 .. 19076379
559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G016270.1

Sequence Viewer

Length: 357 bp
ATGGATAGGTACTATCCTCTTCGTTCCGATTCGATGGATTCAAAGAGTTGCACCAGTGTGTGCTATTGCGGAGGCTTCCCGGTTGAGGTTGAGCCCAAGGCCTCGATGACTAGTACTGCTTCACAAAACATTACCACAAGCAGTGGGACGAATATTCCGATGTGCAAAAAGCTTGACGAGTTGGGAGGCTGGCTCGTTGACAGCGTGATAGCAGCTTTCTTTGGGTCTCTGCAGCGCTGCTCTTGCATTCACATCGATACCAAAGACGACACTGATCATGATCCTATTTACATGCCTCTTAGTAATGCCAACAACGAAGATACCGACGTAGAAATCCCAATAGCTACTGGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.86

Weight (kDa)

4.34

Isoelectric Point (pI)

57.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017966)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18110 FvH4_1g18141
prunus_persica Prupe.6G217400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0108601
rosa_laevigata RLG00000017680
rosa_roxburghii Rroxscaffold_2G00134990
rosa_samantha Rh2AG203600 Rh2BG216400 Rh2CG207500 Rh2DG210600
rosa_wichuraiana Rw2G016270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 69
AclWI GGATC 1 cut(s) 275
AfaI GTAC 2 cut(s) 11, 115
AfeI AGCGCT 1 cut(s) 236
AfiI CCNNNNNNNGG 1 cut(s) 85
AgsI TTSAA 1 cut(s) 42
AhlI ACTAGT 1 cut(s) 110
AleI CACNNNNGTG 1 cut(s) 56
AluBI AGCT 3 cut(s) 172, 215, 344
AluI AGCT 3 cut(s) 172, 215, 344
Alw26I GTCTC 1 cut(s) 231
AlwI GGATC 1 cut(s) 275
Aor51HI AGCGCT 1 cut(s) 236
AoxI GGCC 1 cut(s) 99
ApeKI GCWGC 3 cut(s) 212, 232, 237
AspLEI GCGC 1 cut(s) 237
AsuC2I CCSGG 1 cut(s) 80
BaeI ACNNNNGTAYC 2 cut(s) 312, 345
BanII GRGCYC 1 cut(s) 96
BbvI GCAGC 3 cut(s) 224, 224, 244
BccI CCATC 1 cut(s) 28
BcgI CGANNNNNNTGC 2 cut(s) 235, 269
BclI TGATCA 1 cut(s) 274
BcnI CCSGG 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 231
BcuI ACTAGT 1 cut(s) 110
BfaI CTAG 1 cut(s) 111
BfmI CTRYAG 1 cut(s) 230
BfoI RGCGCY 1 cut(s) 238
BisI GCNGC 3 cut(s) 213, 233, 238
BlsI GCNGC 3 cut(s) 214, 234, 239
BmcAI AGTACT 1 cut(s) 115
Bme1390I CCNGG 1 cut(s) 80
BmrFI CCNGG 1 cut(s) 80
BplI GAGNNNNNCTC 2 cut(s) 177, 209
BpuMI CCSGG 1 cut(s) 80
Bsa29I ATCGAT 1 cut(s) 255
BsaBI GATNNNNATC 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 96
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse1I ACTGG 2 cut(s) 54, 352
Bse8I GATNNNNATC 1 cut(s) 279
BseCI ATCGAT 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 96
BseJI GATNNNNATC 1 cut(s) 279
BseLI CCNNNNNNNGG 1 cut(s) 85
BseNI ACTGG 2 cut(s) 54, 352
BseXI GCAGC 3 cut(s) 224, 224, 244
BshFI GGCC 1 cut(s) 101
BshVI ATCGAT 1 cut(s) 255
BsiSI CCGG 1 cut(s) 80
BslFI GGGAC 1 cut(s) 160
BslI CCNNNNNNNGG 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 231
BsmFI GGGAC 1 cut(s) 160
BsmI GAATGC 1 cut(s) 246
BsnI GGCC 1 cut(s) 101
Bso31I GGTCTC 1 cut(s) 231
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 2 cut(s) 274, 280
BspACI CCGC 1 cut(s) 69
BspANI GGCC 1 cut(s) 101
BspDI ATCGAT 1 cut(s) 255
BspHI TCATGA 1 cut(s) 277
BspMAI CTGCAG 1 cut(s) 234
BspPI GGATC 1 cut(s) 275
BspTNI GGTCTC 1 cut(s) 231
BsrI ACTGG 2 cut(s) 54, 352
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 2 cut(s) 274, 280
BssT1I CCWWGG 1 cut(s) 96
Bst6I CTCTTC 1 cut(s) 24
BstC8I GCNNGC 1 cut(s) 191
BstDEI CTNAG 1 cut(s) 299
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 1 cut(s) 237
BstKTI GATC 2 cut(s) 277, 283
BstMAI GTCTC 1 cut(s) 231
BstMBI GATC 2 cut(s) 274, 280
BstMWI GCNNNNNNNGC 1 cut(s) 243
BstNSI RCATGY 1 cut(s) 295
BstSCI CCNGG 1 cut(s) 78
BstSFI CTRYAG 1 cut(s) 230
BstV1I GCAGC 3 cut(s) 224, 224, 244
Bsu15I ATCGAT 1 cut(s) 255
BsuRI GGCC 1 cut(s) 101
BsuTUI ATCGAT 1 cut(s) 255
BtsI GCAGTG 1 cut(s) 148
BtsIMutI CAGTG 3 cut(s) 61, 148, 270
Cac8I GCNNGC 1 cut(s) 191
CciI TCATGA 1 cut(s) 277
CfoI GCGC 1 cut(s) 237
ClaI ATCGAT 1 cut(s) 255
Csp6I GTAC 2 cut(s) 10, 114
CviAII CATG 2 cut(s) 278, 292
CviJI RGCY 8 cut(s) 75, 94, 101, 172, 189, 193, 215, 344
CviKI_1 RGCY 8 cut(s) 75, 94, 101, 172, 189, 193, 215, 344
CviQI GTAC 2 cut(s) 10, 114
DdeI CTNAG 1 cut(s) 299
DpnI GATC 2 cut(s) 276, 282
DpnII GATC 2 cut(s) 274, 280
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 96
Eco147I AGGCCT 1 cut(s) 101
Eco24I GRGCYC 1 cut(s) 96
Eco31I GGTCTC 1 cut(s) 231
Eco47III AGCGCT 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 96
EcoT38I GRGCYC 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 2 cut(s) 281, 295
FaiI YATR 3 cut(s) 279, 293, 353
FaqI GGGAC 1 cut(s) 160
FatI CATG 2 cut(s) 277, 291
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 3 cut(s) 213, 233, 238
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 3 cut(s) 213, 233, 238
FspBI CTAG 1 cut(s) 111
GlaI GCGC 1 cut(s) 236
GluI GCNGC 3 cut(s) 213, 233, 238
HaeII RGCGCY 1 cut(s) 238
HaeIII GGCC 1 cut(s) 101
HapII CCGG 1 cut(s) 80
HhaI GCGC 1 cut(s) 237
Hin1II CATG 2 cut(s) 281, 295
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 2 cut(s) 29, 38
HpaII CCGG 1 cut(s) 80
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 2 cut(s) 28, 159
Hpy188III TCNNGA 1 cut(s) 278
Hpy8I GTNNAC 1 cut(s) 199
Hpy99I CGWCG 1 cut(s) 329
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 4 cut(s) 51, 165, 232, 246
HpyF10VI GCNNNNNNNGC 1 cut(s) 243
HpyF3I CTNAG 1 cut(s) 299
HpySE526I ACGT 1 cut(s) 327
Hsp92II CATG 2 cut(s) 281, 295
HspAI GCGC 1 cut(s) 235
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 2 cut(s) 274, 280
LpnPI CCDG 4 cut(s) 67, 93, 175, 333
Lsp1109I GCAGC 3 cut(s) 224, 224, 244
MaeI CTAG 1 cut(s) 111
MaeII ACGT 1 cut(s) 327
MalI GATC 2 cut(s) 276, 282
MboI GATC 2 cut(s) 274, 280
MboII GAAGA 2 cut(s) 11, 329
MhlI GDGCHC 1 cut(s) 96
MnlI CCTC 6 cut(s) 27, 65, 79, 112, 179, 306
MslI CAYNNNNRTG 1 cut(s) 56
MspI CCGG 1 cut(s) 80
MspR9I CCNGG 1 cut(s) 80
Mva1269I GAATGC 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 243
NciI CCSGG 1 cut(s) 80
NdeII GATC 2 cut(s) 274, 280
NlaIII CATG 2 cut(s) 281, 295
NspI RCATGY 1 cut(s) 295
OliI CACNNNNGTG 1 cut(s) 56
PagI TCATGA 1 cut(s) 277
PceI AGGCCT 1 cut(s) 101
PcsI WCGNNNNNNNCGW 3 cut(s) 155, 201, 321
PctI GAATGC 1 cut(s) 246
PfeI GAWTC 2 cut(s) 29, 38
PkrI GCNGC 3 cut(s) 214, 234, 239
PstI CTGCAG 1 cut(s) 234
RsaI GTAC 2 cut(s) 11, 115
RsaNI GTAC 2 cut(s) 10, 114
RseI CAYNNNNRTG 1 cut(s) 56
SatI GCNGC 3 cut(s) 213, 233, 238
Sau3AI GATC 2 cut(s) 274, 280
ScaI AGTACT 1 cut(s) 115
ScrFI CCNGG 1 cut(s) 80
SduI GDGCHC 1 cut(s) 96
SetI ASST 6 cut(s) 11, 90, 174, 217, 330, 346
SfcI CTRYAG 1 cut(s) 230
SmiMI CAYNNNNRTG 1 cut(s) 56
SpeI ACTAGT 1 cut(s) 110
SseBI AGGCCT 1 cut(s) 101
SsiI CCGC 1 cut(s) 69
SspI AATATT 1 cut(s) 154
SspMI CTAG 1 cut(s) 111
StuI AGGCCT 1 cut(s) 101
StyD4I CCNGG 1 cut(s) 78
StyI CCWWGG 1 cut(s) 96
TaiI ACGT 1 cut(s) 330
TaqI TCGA 3 cut(s) 32, 104, 255
TatI WGTACW 1 cut(s) 113
TfiI GAWTC 2 cut(s) 29, 38
TscAI CASTG 3 cut(s) 61, 148, 277
TseI GCWGC 3 cut(s) 212, 232, 237
TspRI CASTG 3 cut(s) 61, 148, 277
XceI RCATGY 1 cut(s) 295
XspI CTAG 1 cut(s) 111
ZrmI AGTACT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.