Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0010519

Physical Location & Seq

Genomic Coordinates Reverse (-)

10592160 .. 10594715

Gene Structure 2556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g18210.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAGTCACAGAAGGGTTCATTCACAAGGGAACATACCCTTTGCTTGGGAGGCCAAGCCTGGAGTCTCCAAGGTTGCAAACAACGCAGACTTCCCTGCAGAAACTGCGTTTCCTGCTCTTGGTTCAAAATTGTCACGACCACCATTACCTAATGGCGTTTCTGAAGATTCCGGAGAAAAAAAAACAGTTAAGGGAATGGATCAGAATGACATAAAGATCCCTCTGCCTCCATGTTTGTTGAAGGTTCCGAGCAGAAGCGCTTCTGGGAAAGGACTCAAGTGCCAAGCTGCAGAGGAGGACCCTTTTCTTTTGGCATTCAAAGTGTGCACCAGAACAACTAGTACTACTGCTCCTGCTGTGAATTCTTCTCCAGGTAACAAGTTCGTTGCTCAGAAAAACAAGAGAGGCTCTGTGGGGATAATCGGGTCGAAATTGAAGAGCAAGTACTCTGTGTTTTCGTGCAAGAATTCATGTGAGGTTAGGGATGGTAATTTTGTAAAGCTTCCTCCTCTTCCTAGAGACAGAATTCGCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

19.15

Weight (kDa)

9.95

Isoelectric Point (pI)

47.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010519)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18210 FvH4_1g18210
prunus_persica	Prupe.1G419300_v2.0.a1 Prupe.6G217200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0108721
rosa_laevigata	RLG00000010517 RLG00000017687
rosa_multiflora	Rmu_co8494099.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134870 Rroxscaffold_7G00158960
rosa_rugosa	Rorug02G0155300 Rorug06G0376900
rosa_samantha	Rh2AG205500 Rh2BG217200 Rh2CG208300 Rh2DG211600 Rh6AG490500 Rh6BG500000 Rh6CG504900 Rh6DG490900
rosa_wichuraiana	Rw2G016350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	170
AclWI	GGATC	2 cut(s)	207, 211
AcsI	RAATTY	3 cut(s)	361, 466, 525
AcuI	CTGAAG	1 cut(s)	183
AfaI	GTAC	2 cut(s)	343, 446
AfeI	AGCGCT	1 cut(s)	259
AfiI	CCNNNNNNNGG	2 cut(s)	45, 119
AgsI	TTSAA	4 cut(s)	126, 241, 319, 436
AhlI	ACTAGT	1 cut(s)	338
AjnI	CCWGG	2 cut(s)	58, 370
AluBI	AGCT	2 cut(s)	287, 502
AluI	AGCT	2 cut(s)	287, 502
Alw21I	GWGCWC	1 cut(s)	329
Alw26I	GTCTC	2 cut(s)	70, 513
Alw44I	GTGCAC	1 cut(s)	325
AlwI	GGATC	2 cut(s)	207, 211
AlwNI	CAGNNNCTG	1 cut(s)	104
Aor13HI	TCCGGA	1 cut(s)	170
Aor51HI	AGCGCT	1 cut(s)	259
AoxI	GGCC	1 cut(s)	51
ApaLI	GTGCAC	1 cut(s)	325
ApeKI	GCWGC	1 cut(s)	287
ApoI	RAATTY	3 cut(s)	361, 466, 525
Asp700I	GAANNNNTTC	1 cut(s)	259
AspLEI	GCGC	1 cut(s)	260
AspS9I	GGNCC	1 cut(s)	298
AvaII	GGWCC	1 cut(s)	298
BaeGI	GKGCMC	1 cut(s)	329
BarI	GAAGNNNNNNTAC	2 cut(s)	428, 460
Bbv12I	GWGCWC	1 cut(s)	329
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	1 cut(s)	479
BciT130I	CCWGG	2 cut(s)	60, 372
BcoDI	GTCTC	2 cut(s)	70, 513
BcuI	ACTAGT	1 cut(s)	338
BfaI	CTAG	2 cut(s)	339, 516
BfmI	CTRYAG	2 cut(s)	96, 288
BfoI	RGCGCY	1 cut(s)	261
BisI	GCNGC	1 cut(s)	288
BlsI	GCNGC	1 cut(s)	289
BmcAI	AGTACT	2 cut(s)	343, 446
Bme1390I	CCNGG	2 cut(s)	60, 372
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	1 cut(s)	298
BmiI	GGNNCC	2 cut(s)	246, 300
BmrFI	CCNGG	2 cut(s)	60, 372
BpmI	CTGGAG	2 cut(s)	81, 354
BpuEI	CTTGAG	1 cut(s)	260
BsaJI	CCNNGG	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	170
BsaXI	ACNNNNNCTCC	2 cut(s)	334, 364
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 119
BseAI	TCCGGA	1 cut(s)	170
BseBI	CCWGG	2 cut(s)	60, 372
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	1 cut(s)	490
BseLI	CCNNNNNNNGG	2 cut(s)	45, 119
BseMII	CTCAG	1 cut(s)	404
BseRI	GAGGAG	2 cut(s)	308, 498
BseSI	GKGCMC	1 cut(s)	329
BseXI	GCAGC	1 cut(s)	274
BshFI	GGCC	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	329
BsiSI	CCGG	1 cut(s)	171
BslI	CCNNNNNNNGG	2 cut(s)	45, 119
BsmAI	GTCTC	2 cut(s)	70, 513
BsmI	GAATGC	1 cut(s)	314
BsnI	GGCC	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp13I	TCCGGA	1 cut(s)	170
Bsp143I	GATC	2 cut(s)	199, 216
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	1 cut(s)	403
BspEI	TCCGGA	1 cut(s)	170
BspLI	GGNNCC	2 cut(s)	246, 300
BspMAI	CTGCAG	2 cut(s)	100, 292
BspPI	GGATC	2 cut(s)	207, 211
BspQI	GCTCTTC	1 cut(s)	431
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	2 cut(s)	199, 216
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	2 cut(s)	60, 372
Bst4CI	ACNGT	1 cut(s)	187
Bst6I	CTCTTC	2 cut(s)	431, 516
BstAPI	GCANNNNNTGC	1 cut(s)	104
BstDEI	CTNAG	1 cut(s)	390
BstF5I	GGATG	1 cut(s)	490
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	2 cut(s)	202, 219
BstMAI	GTCTC	2 cut(s)	70, 513
BstMBI	GATC	2 cut(s)	199, 216
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 83, 104, 113
BstNI	CCWGG	2 cut(s)	60, 372
BstSCI	CCNGG	2 cut(s)	58, 370
BstSFI	CTRYAG	2 cut(s)	96, 288
BstSLI	GKGCMC	1 cut(s)	329
BstV1I	GCAGC	1 cut(s)	274
BstX2I	RGATCY	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	216
BsuRI	GGCC	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	490
CaiI	CAGNNNCTG	1 cut(s)	104
CfoI	GCGC	1 cut(s)	260
Cfr13I	GGNCC	1 cut(s)	298
Csp6I	GTAC	2 cut(s)	342, 445
CviAII	CATG	2 cut(s)	231, 471
CviJI	RGCY	5 cut(s)	53, 58, 287, 408, 502
CviKI_1	RGCY	5 cut(s)	53, 58, 287, 408, 502
CviQI	GTAC	2 cut(s)	342, 445
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	2 cut(s)	201, 218
DpnII	GATC	2 cut(s)	199, 216
Eam1104I	CTCTTC	2 cut(s)	431, 516
EarI	CTCTTC	2 cut(s)	431, 516
Eco130I	CCWWGG	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	298
Eco47III	AGCGCT	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	183
EcoO109I	RGGNCCY	1 cut(s)	298
EcoRI	GAATTC	3 cut(s)	361, 466, 525
EcoRII	CCWGG	2 cut(s)	58, 370
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	2 cut(s)	234, 474
FaiI	YATR	5 cut(s)	35, 212, 232, 472, 535
FatI	CATG	2 cut(s)	230, 470
Fnu4HI	GCNGC	1 cut(s)	288
FokI	GGATG	1 cut(s)	497
Fsp4HI	GCNGC	1 cut(s)	288
FspBI	CTAG	2 cut(s)	339, 516
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	1 cut(s)	288
GsuI	CTGGAG	2 cut(s)	81, 354
HaeII	RGCGCY	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	1 cut(s)	171
HhaI	GCGC	1 cut(s)	260
Hin1II	CATG	2 cut(s)	234, 474
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HindIII	AAGCTT	1 cut(s)	500
HinfI	GANTC	4 cut(s)	4, 63, 167, 273
HpaII	CCGG	1 cut(s)	171
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188I	TCNGA	4 cut(s)	163, 204, 249, 393
Hpy188III	TCNNGA	2 cut(s)	135, 171
Hpy8I	GTNNAC	1 cut(s)	327
HpyAV	CCTTC	2 cut(s)	6, 235
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4V	TGCA	5 cut(s)	77, 98, 290, 327, 462
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 83, 104, 113
HpyF3I	CTNAG	1 cut(s)	390
Hsp92II	CATG	2 cut(s)	234, 474
HspAI	GCGC	1 cut(s)	258
Kpn2I	TCCGGA	1 cut(s)	170
Kzo9I	GATC	2 cut(s)	199, 216
LguI	GCTCTTC	1 cut(s)	431
LmnI	GCTCC	1 cut(s)	355
Lsp1109I	GCAGC	1 cut(s)	274
MaeI	CTAG	2 cut(s)	339, 516
MaeIII	GTNAC	3 cut(s)	5, 132, 374
MalI	GATC	2 cut(s)	201, 218
MboI	GATC	2 cut(s)	199, 216
MboII	GAAGA	4 cut(s)	176, 357, 448, 503
MflI	RGATCY	1 cut(s)	216
MhlI	GDGCHC	1 cut(s)	329
MluCI	AATT	6 cut(s)	128, 361, 431, 466, 490, 525
MlyI	GAGTC	3 cut(s)	13, 72, 267
MnlI	CCTC	9 cut(s)	43, 231, 237, 286, 289, 398, 469, 516, 519
MroI	TCCGGA	1 cut(s)	170
MroXI	GAANNNNTTC	1 cut(s)	259
MseI	TTAA	1 cut(s)	189
MspI	CCGG	1 cut(s)	171
MspR9I	CCNGG	2 cut(s)	60, 372
Mva1269I	GAATGC	1 cut(s)	314
MvaI	CCWGG	2 cut(s)	60, 372
MwoI	GCNNNNNNNGC	4 cut(s)	50, 83, 104, 113
NdeII	GATC	2 cut(s)	199, 216
NlaIII	CATG	2 cut(s)	234, 474
NlaIV	GGNNCC	2 cut(s)	246, 300
NmuCI	GTSAC	2 cut(s)	5, 132
PciSI	GCTCTTC	1 cut(s)	431
PctI	GAATGC	1 cut(s)	314
PdmI	GAANNNNTTC	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	289
PleI	GAGTC	3 cut(s)	12, 71, 267
PpsI	GAGTC	3 cut(s)	12, 71, 267
PpuMI	RGGWCCY	1 cut(s)	298
Psp5II	RGGWCCY	1 cut(s)	298
Psp6I	CCWGG	2 cut(s)	58, 370
PspGI	CCWGG	2 cut(s)	58, 370
PspN4I	GGNNCC	2 cut(s)	246, 300
PspPI	GGNCC	1 cut(s)	298
PspPPI	RGGWCCY	1 cut(s)	298
PsrI	GAACNNNNNNTAC	2 cut(s)	325, 357
PstI	CTGCAG	2 cut(s)	100, 292
PstNI	CAGNNNCTG	1 cut(s)	104
PsuI	RGATCY	1 cut(s)	216
RsaI	GTAC	2 cut(s)	343, 446
RsaNI	GTAC	2 cut(s)	342, 445
SapI	GCTCTTC	1 cut(s)	431
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	1 cut(s)	288
Sau3AI	GATC	2 cut(s)	199, 216
Sau96I	GGNCC	1 cut(s)	298
ScaI	AGTACT	2 cut(s)	343, 446
SchI	GAGTC	3 cut(s)	13, 72, 267
ScrFI	CCNGG	2 cut(s)	60, 372
SduI	GDGCHC	1 cut(s)	329
SetI	ASST	7 cut(s)	75, 151, 246, 289, 376, 480, 504
SfcI	CTRYAG	2 cut(s)	96, 288
SinI	GGWCC	1 cut(s)	298
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
SpeI	ACTAGT	1 cut(s)	338
Sse9I	AATT	6 cut(s)	128, 361, 431, 466, 490, 525
SspMI	CTAG	2 cut(s)	339, 516
StyD4I	CCNGG	2 cut(s)	58, 370
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	187
TaqI	TCGA	1 cut(s)	428
TasI	AATT	6 cut(s)	128, 361, 431, 466, 490, 525
TatI	WGTACW	2 cut(s)	341, 444
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TseFI	GTSAC	2 cut(s)	5, 132
TseI	GCWGC	1 cut(s)	287
Tsp45I	GTSAC	2 cut(s)	5, 132
TspDTI	ATGAA	2 cut(s)	8, 459
VneI	GTGCAC	1 cut(s)	325
VpaK11BI	GGWCC	1 cut(s)	298
XapI	RAATTY	3 cut(s)	361, 466, 525
XmnI	GAANNNNTTC	1 cut(s)	259
XspI	CTAG	2 cut(s)	339, 516
ZrmI	AGTACT	2 cut(s)	343, 446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.