RLG00000010517

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0010519
Physical Location & Seq
Forward (+)
2325309 .. 2328135
2827 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010517

Sequence Viewer

Length: 423 bp
ATGACTACTACTACTATTCACAGTCGCAGCAATAGCAAGCTCCAGTTCTACTCCAGAGGCACTGTGCCCTTCTCTTGGGAAAACAAGCCCGGAGTCTCCAAGCTGTCACACACCAAAACCGAAGCGAAAACGGAGTACTACTTCATCAAAGACGACGATTACAAACTACCACCACCGCCTAGGGTTTCTTTCCACGGGGACTACCAGCTCCCTCTTCCTCCTCCCTGCACTTTCCAGGCGCCCATTTCTAGAAGCTCCTCCATTAAGGGCTTGATCAGCAACAAAGCCGAAACCGATGACCCTTTTCAAATGGCCATCCTCGAGTGCACCAAGTCGATCCACAATGGTGGTGGCAATGATAGTGGGGATGTTGCTACCAAAGTCTTCGCACCACTAATTGCCGACTCACCTTATCACCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

141

Amino Acids

15.51

Weight (kDa)

7.79

Isoelectric Point (pI)

64.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 238
AciI CCGC 1 cut(s) 176
AclWI GGATC 1 cut(s) 331
AcoI YGGCCR 1 cut(s) 312
AcyI GRCGYC 1 cut(s) 239
AfaI GTAC 1 cut(s) 137
AfiI CCNNNNNNNGG 1 cut(s) 75
AgsI TTSAA 1 cut(s) 308
AjnI CCWGG 1 cut(s) 234
AleI CACNNNNGTG 1 cut(s) 345
AluBI AGCT 4 cut(s) 40, 103, 208, 255
AluI AGCT 4 cut(s) 40, 103, 208, 255
Alw21I GWGCWC 1 cut(s) 329
Alw26I GTCTC 1 cut(s) 100
Alw44I GTGCAC 1 cut(s) 325
AlwI GGATC 1 cut(s) 331
Ama87I CYCGRG 1 cut(s) 320
AoxI GGCC 1 cut(s) 312
ApaLI GTGCAC 1 cut(s) 325
ApeKI GCWGC 1 cut(s) 27
AspA2I CCTAGG 1 cut(s) 179
AspLEI GCGC 1 cut(s) 241
AsuC2I CCSGG 1 cut(s) 90
AsuHPI GGTGA 2 cut(s) 399, 407
AvaI CYCGRG 1 cut(s) 320
AvrII CCTAGG 1 cut(s) 179
BaeGI GKGCMC 2 cut(s) 69, 329
BalI TGGCCA 1 cut(s) 314
BanI GGYRCC 1 cut(s) 238
BbsI GAAGAC 1 cut(s) 376
Bbv12I GWGCWC 1 cut(s) 329
BbvI GCAGC 1 cut(s) 39
BccI CCATC 1 cut(s) 323
BciT130I CCWGG 1 cut(s) 236
BclI TGATCA 1 cut(s) 273
BcnI CCSGG 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 100
BfaI CTAG 2 cut(s) 180, 249
BfoI RGCGCY 1 cut(s) 242
BisI GCNGC 1 cut(s) 28
BlnI CCTAGG 1 cut(s) 179
BlsI GCNGC 1 cut(s) 29
BmcAI AGTACT 1 cut(s) 137
Bme1390I CCNGG 2 cut(s) 90, 236
BmeT110I CYCGRG 1 cut(s) 320
BmiI GGNNCC 1 cut(s) 240
BmrFI CCNGG 2 cut(s) 90, 236
BpiI GAAGAC 1 cut(s) 376
BpmI CTGGAG 2 cut(s) 26, 37
BpuMI CCSGG 1 cut(s) 90
BsaHI GRCGYC 1 cut(s) 239
BsaJI CCNNGG 2 cut(s) 179, 193
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse1I ACTGG 1 cut(s) 43
Bse3DI GCAATG 1 cut(s) 361
BseBI CCWGG 1 cut(s) 236
BseDI CCNNGG 2 cut(s) 179, 193
BseGI GGATG 2 cut(s) 315, 373
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMI GCAATG 1 cut(s) 361
BseNI ACTGG 1 cut(s) 43
BseRI GAGGAG 2 cut(s) 210, 247
BseSI GKGCMC 2 cut(s) 69, 329
BseXI GCAGC 1 cut(s) 39
BsgI GTGCAG 1 cut(s) 211
BshFI GGCC 1 cut(s) 314
BshNI GGYRCC 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 329
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 1 cut(s) 90
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 75
BsmAI GTCTC 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 212
BsnI GGCC 1 cut(s) 314
BsoBI CYCGRG 1 cut(s) 320
Bsp1286I GDGCHC 2 cut(s) 69, 329
Bsp143I GATC 2 cut(s) 273, 336
BspACI CCGC 1 cut(s) 176
BspANI GGCC 1 cut(s) 314
BspLI GGNNCC 1 cut(s) 240
BspPI GGATC 1 cut(s) 331
BspT107I GGYRCC 1 cut(s) 238
BsrDI GCAATG 1 cut(s) 361
BsrI ACTGG 1 cut(s) 43
BssECI CCNNGG 2 cut(s) 179, 193
BssMI GATC 2 cut(s) 273, 336
BssNI GRCGYC 1 cut(s) 239
BssT1I CCWWGG 1 cut(s) 179
Bst2UI CCWGG 1 cut(s) 236
Bst4CI ACNGT 2 cut(s) 23, 64
Bst6I CTCTTC 1 cut(s) 219
BstACI GRCGYC 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 38
BstDSI CCRYGG 1 cut(s) 193
BstF5I GGATG 2 cut(s) 315, 373
BstH2I RGCGCY 1 cut(s) 242
BstHHI GCGC 1 cut(s) 241
BstKTI GATC 2 cut(s) 276, 339
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 2 cut(s) 273, 336
BstMWI GCNNNNNNNGC 2 cut(s) 33, 276
BstNI CCWGG 1 cut(s) 236
BstSCI CCNGG 2 cut(s) 88, 234
BstSLI GKGCMC 2 cut(s) 69, 329
BstV1I GCAGC 1 cut(s) 39
BstV2I GAAGAC 1 cut(s) 376
BstXI CCANNNNNNTGG 1 cut(s) 347
BsuRI GGCC 1 cut(s) 314
BtgI CCRYGG 1 cut(s) 193
BtsCI GGATG 2 cut(s) 315, 373
BtsIMutI CAGTG 1 cut(s) 60
Cac8I GCNNGC 1 cut(s) 38
CfoI GCGC 1 cut(s) 241
Csp6I GTAC 1 cut(s) 136
CspCI CAANNNNNGTGG 4 cut(s) 331, 343, 366, 378
CviJI RGCY 8 cut(s) 40, 88, 103, 208, 255, 270, 287, 314
CviKI_1 RGCY 8 cut(s) 40, 88, 103, 208, 255, 270, 287, 314
CviQI GTAC 1 cut(s) 136
DinI GGCGCC 1 cut(s) 240
DpnI GATC 2 cut(s) 275, 338
DpnII GATC 2 cut(s) 273, 336
EaeI YGGCCR 1 cut(s) 312
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
Eco130I CCWWGG 1 cut(s) 179
Eco88I CYCGRG 1 cut(s) 320
EcoRII CCWGG 1 cut(s) 234
EcoT14I CCWWGG 1 cut(s) 179
EgeI GGCGCC 1 cut(s) 240
EheI GGCGCC 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 179
FaqI GGGAC 1 cut(s) 212
FbaI TGATCA 1 cut(s) 273
Fnu4HI GCNGC 1 cut(s) 28
FokI GGATG 2 cut(s) 302, 380
Fsp4HI GCNGC 1 cut(s) 28
FspBI CTAG 2 cut(s) 180, 249
GlaI GCGC 1 cut(s) 240
GluI GCNGC 1 cut(s) 28
GsuI CTGGAG 2 cut(s) 26, 37
HaeII RGCGCY 1 cut(s) 242
HaeIII GGCC 1 cut(s) 314
HapII CCGG 1 cut(s) 90
HhaI GCGC 1 cut(s) 241
Hin1I GRCGYC 1 cut(s) 239
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HinfI GANTC 2 cut(s) 93, 404
HpaII CCGG 1 cut(s) 90
HphI GGTGA 2 cut(s) 399, 407
Hpy166II GTNNAC 1 cut(s) 327
Hpy188III TCNNGA 2 cut(s) 54, 249
Hpy8I GTNNAC 1 cut(s) 327
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 2 cut(s) 23, 64
HpyCH4V TGCA 2 cut(s) 228, 327
HpyF10VI GCNNNNNNNGC 2 cut(s) 33, 276
Hsp92I GRCGYC 1 cut(s) 239
HspAI GCGC 1 cut(s) 239
KasI GGCGCC 1 cut(s) 238
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 2 cut(s) 273, 336
LmnI GCTCC 3 cut(s) 45, 213, 260
LpnPI CCDG 7 cut(s) 56, 67, 103, 218, 221, 238, 248
Lsp1109I GCAGC 1 cut(s) 39
MaeI CTAG 2 cut(s) 180, 249
MaeIII GTNAC 1 cut(s) 105
MalI GATC 2 cut(s) 275, 338
MboI GATC 2 cut(s) 273, 336
MboII GAAGA 2 cut(s) 206, 376
MhlI GDGCHC 2 cut(s) 69, 329
MlsI TGGCCA 1 cut(s) 314
MluCI AATT 1 cut(s) 396
MluNI TGGCCA 1 cut(s) 314
Mly113I GGCGCC 1 cut(s) 239
MlyI GAGTC 2 cut(s) 102, 398
MnlI CCTC 6 cut(s) 50, 222, 228, 231, 268, 329
Mox20I TGGCCA 1 cut(s) 314
MscI TGGCCA 1 cut(s) 314
MseI TTAA 1 cut(s) 264
MslI CAYNNNNRTG 1 cut(s) 345
Msp20I TGGCCA 1 cut(s) 314
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 2 cut(s) 90, 236
MvaI CCWGG 1 cut(s) 236
MwoI GCNNNNNNNGC 2 cut(s) 33, 276
NarI GGCGCC 1 cut(s) 239
NciI CCSGG 1 cut(s) 90
NdeII GATC 2 cut(s) 273, 336
NlaIV GGNNCC 1 cut(s) 240
NmuCI GTSAC 1 cut(s) 105
OliI CACNNNNGTG 1 cut(s) 345
PaeR7I CTCGAG 1 cut(s) 320
PkrI GCNGC 1 cut(s) 29
PleI GAGTC 2 cut(s) 101, 398
PluTI GGCGCC 1 cut(s) 242
PpsI GAGTC 2 cut(s) 101, 398
Psp6I CCWGG 1 cut(s) 234
PspGI CCWGG 1 cut(s) 234
PspN4I GGNNCC 1 cut(s) 240
PspXI VCTCGAGB 1 cut(s) 320
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
RseI CAYNNNNRTG 1 cut(s) 345
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 1 cut(s) 28
Sau3AI GATC 2 cut(s) 273, 336
ScaI AGTACT 1 cut(s) 137
SchI GAGTC 2 cut(s) 102, 398
ScrFI CCNGG 2 cut(s) 90, 236
SduI GDGCHC 2 cut(s) 69, 329
SetI ASST 6 cut(s) 42, 105, 210, 257, 412, 420
SfoI GGCGCC 1 cut(s) 240
Sfr274I CTCGAG 1 cut(s) 320
SlaI CTCGAG 1 cut(s) 320
SmiMI CAYNNNNRTG 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 1 cut(s) 396
SsiI CCGC 1 cut(s) 176
SspDI GGCGCC 1 cut(s) 238
SspMI CTAG 2 cut(s) 180, 249
StyD4I CCNGG 2 cut(s) 88, 234
StyI CCWWGG 1 cut(s) 179
TaaI ACNGT 2 cut(s) 23, 64
TaqI TCGA 2 cut(s) 321, 335
TasI AATT 1 cut(s) 396
TatI WGTACW 1 cut(s) 135
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TscAI CASTG 1 cut(s) 67
TseFI GTSAC 1 cut(s) 105
TseI GCWGC 1 cut(s) 27
Tsp45I GTSAC 1 cut(s) 105
TspDTI ATGAA 1 cut(s) 133
TspGWI ACGGA 1 cut(s) 146
TspRI CASTG 1 cut(s) 67
VneI GTGCAC 1 cut(s) 325
XbaI TCTAGA 1 cut(s) 248
XcmI CCANNNNNNNNNTGG 1 cut(s) 347
XhoI CTCGAG 1 cut(s) 320
XmaJI CCTAGG 1 cut(s) 179
XspI CTAG 2 cut(s) 180, 249
ZrmI AGTACT 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.