Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0010519

Physical Location & Seq

Genomic Coordinates Reverse (-)

20067309 .. 20071120

Gene Structure 3812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG211600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAGTCACAGAAAGGTTCATTCACAAGGGAACATACCCTTTGCTTGGGAGGCCAAGCCCGGAGTCTCCAAGGTCACAAACAAAGCAGACTTCCCTACAGAAACTGGGTTTCCTGCCCTTAGTTCAAAACTGTCACAACCACCACTAGCTAATGACGTTTCTGAAGATTCCGGAGAGAAACCAGTTAAGGGATTGGATCAGAATGACATAAAGATCCCTCTGCCTCCATGTTTGTTGAAGGTTCCGAGCAGAAGCGCTTCTGGAAAAGGACTTAAGTGGCAGGCAGCAGAGGAGGATCCCTTTCTTTTGGCTTTCAAAGTGTGCACCAGAACCACTAGTACTACTAGTGCTGTGAATTCTTCTCCAGGTAACAAGTTCGTTGTTCAGAAAAACAAGAGAGGCTCTGTTGGGCTAATTGGGTCGAAATTGAAGAGCAAATACTCTGTGTTTTCTTGCAAGAATTCATGTGAGGTAAGGGATGGTAGTTTTGTAAAGCTTCCTCCTGTTCCAAGAGACAGAATTCGCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

176

Amino Acids

19.05

Weight (kDa)

9.83

Isoelectric Point (pI)

46.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010519)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18210 FvH4_1g18210
prunus_persica	Prupe.1G419300_v2.0.a1 Prupe.6G217200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0108721
rosa_laevigata	RLG00000010517 RLG00000017687
rosa_multiflora	Rmu_co8494099.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134870 Rroxscaffold_7G00158960
rosa_rugosa	Rorug02G0155300 Rorug06G0376900
rosa_samantha	Rh2AG205500 Rh2BG217200 Rh2CG208300 Rh2DG211600 Rh6AG490500 Rh6BG500000 Rh6CG504900 Rh6DG490900
rosa_wichuraiana	Rw2G016350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	529
AccIII	TCCGGA	1 cut(s)	170
AclWI	GGATC	4 cut(s)	204, 208, 290, 303
AcsI	RAATTY	3 cut(s)	355, 460, 519
AcuI	CTGAAG	1 cut(s)	183
AfaI	GTAC	1 cut(s)	340
AfeI	AGCGCT	1 cut(s)	256
AfiI	CCNNNNNNNGG	2 cut(s)	45, 188
AflII	CTTAAG	1 cut(s)	272
AgsI	TTSAA	4 cut(s)	126, 238, 316, 430
AhlI	ACTAGT	2 cut(s)	335, 344
AjnI	CCWGG	1 cut(s)	364
AluBI	AGCT	2 cut(s)	149, 496
AluI	AGCT	2 cut(s)	149, 496
Alw21I	GWGCWC	1 cut(s)	326
Alw26I	GTCTC	2 cut(s)	70, 507
Alw44I	GTGCAC	1 cut(s)	322
AlwI	GGATC	4 cut(s)	204, 208, 290, 303
AlwNI	CAGNNNCTG	1 cut(s)	104
Aor13HI	TCCGGA	1 cut(s)	170
Aor51HI	AGCGCT	1 cut(s)	256
AoxI	GGCC	1 cut(s)	51
ApaLI	GTGCAC	1 cut(s)	322
ApeKI	GCWGC	1 cut(s)	284
ApoI	RAATTY	3 cut(s)	355, 460, 519
Asp700I	GAANNNNTTC	1 cut(s)	256
AspLEI	GCGC	1 cut(s)	257
AsuC2I	CCSGG	1 cut(s)	60
BaeGI	GKGCMC	1 cut(s)	326
BamHI	GGATCC	1 cut(s)	295
BarI	GAAGNNNNNNTAC	2 cut(s)	422, 454
Bbv12I	GWGCWC	1 cut(s)	326
BbvI	GCAGC	1 cut(s)	296
BccI	CCATC	1 cut(s)	473
BciT130I	CCWGG	1 cut(s)	366
BcnI	CCSGG	1 cut(s)	60
BcoDI	GTCTC	2 cut(s)	70, 507
BcuI	ACTAGT	2 cut(s)	335, 344
BfaI	CTAG	3 cut(s)	146, 336, 345
BfmI	CTRYAG	1 cut(s)	96
BfoI	RGCGCY	1 cut(s)	258
BfrI	CTTAAG	1 cut(s)	272
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
BmcAI	AGTACT	1 cut(s)	340
Bme1390I	CCNGG	2 cut(s)	60, 366
BmiI	GGNNCC	2 cut(s)	243, 297
BmrFI	CCNGG	2 cut(s)	60, 366
BmrI	ACTGGG	1 cut(s)	114
BmuI	ACTGGG	1 cut(s)	114
BpmI	CTGGAG	1 cut(s)	348
BpuMI	CCSGG	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 188
Bse1I	ACTGG	2 cut(s)	109, 182
BseAI	TCCGGA	1 cut(s)	170
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	1 cut(s)	484
BseLI	CCNNNNNNNGG	2 cut(s)	45, 188
BseNI	ACTGG	2 cut(s)	109, 182
BseRI	GAGGAG	1 cut(s)	305
BseSI	GKGCMC	1 cut(s)	326
BseXI	GCAGC	1 cut(s)	296
BshFI	GGCC	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	326
BsiSI	CCGG	2 cut(s)	60, 171
BslI	CCNNNNNNNGG	2 cut(s)	45, 188
BsmAI	GTCTC	2 cut(s)	70, 507
BsnI	GGCC	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	326
Bsp13I	TCCGGA	1 cut(s)	170
Bsp143I	GATC	3 cut(s)	196, 213, 295
BspANI	GGCC	1 cut(s)	53
BspEI	TCCGGA	1 cut(s)	170
BspLI	GGNNCC	2 cut(s)	243, 297
BspPI	GGATC	4 cut(s)	204, 208, 290, 303
BspQI	GCTCTTC	1 cut(s)	425
BspTI	CTTAAG	1 cut(s)	272
BsrI	ACTGG	2 cut(s)	109, 182
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	3 cut(s)	196, 213, 295
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	1 cut(s)	132
Bst6I	CTCTTC	1 cut(s)	425
BstAFI	CTTAAG	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	1 cut(s)	119
BstF5I	GGATG	1 cut(s)	484
BstH2I	RGCGCY	1 cut(s)	258
BstHHI	GCGC	1 cut(s)	257
BstKTI	GATC	3 cut(s)	199, 216, 298
BstMAI	GTCTC	2 cut(s)	70, 507
BstMBI	GATC	3 cut(s)	196, 213, 295
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	1 cut(s)	366
BstSCI	CCNGG	2 cut(s)	58, 364
BstSFI	CTRYAG	1 cut(s)	96
BstSLI	GKGCMC	1 cut(s)	326
BstV1I	GCAGC	1 cut(s)	296
BstX2I	RGATCY	2 cut(s)	213, 295
BstYI	RGATCY	2 cut(s)	213, 295
BsuRI	GGCC	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	484
Cac8I	GCNNGC	1 cut(s)	282
CaiI	CAGNNNCTG	1 cut(s)	104
CfoI	GCGC	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	339
CviAII	CATG	2 cut(s)	228, 465
CviJI	RGCY	7 cut(s)	53, 58, 149, 311, 402, 412, 496
CviKI_1	RGCY	7 cut(s)	53, 58, 149, 311, 402, 412, 496
CviQI	GTAC	1 cut(s)	339
DdeI	CTNAG	1 cut(s)	119
DpnI	GATC	3 cut(s)	198, 215, 297
DpnII	GATC	3 cut(s)	196, 213, 295
Eam1104I	CTCTTC	1 cut(s)	425
EarI	CTCTTC	1 cut(s)	425
Eco130I	CCWWGG	1 cut(s)	69
Eco47III	AGCGCT	1 cut(s)	256
Eco57I	CTGAAG	1 cut(s)	183
EcoRI	GAATTC	3 cut(s)	355, 460, 519
EcoRII	CCWGG	1 cut(s)	364
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	2 cut(s)	231, 468
FaiI	YATR	5 cut(s)	35, 209, 229, 466, 529
FatI	CATG	2 cut(s)	227, 464
Fnu4HI	GCNGC	1 cut(s)	285
FokI	GGATG	1 cut(s)	491
Fsp4HI	GCNGC	1 cut(s)	285
FspBI	CTAG	3 cut(s)	146, 336, 345
GlaI	GCGC	1 cut(s)	256
GluI	GCNGC	1 cut(s)	285
GsuI	CTGGAG	1 cut(s)	348
HaeII	RGCGCY	1 cut(s)	258
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	2 cut(s)	60, 171
HhaI	GCGC	1 cut(s)	257
Hin1II	CATG	2 cut(s)	231, 468
Hin6I	GCGC	1 cut(s)	255
HinP1I	GCGC	1 cut(s)	255
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	3 cut(s)	4, 63, 167
HpaII	CCGG	2 cut(s)	60, 171
Hpy166II	GTNNAC	1 cut(s)	324
Hpy188I	TCNGA	4 cut(s)	163, 201, 246, 387
Hpy188III	TCNNGA	2 cut(s)	171, 261
Hpy8I	GTNNAC	1 cut(s)	324
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	1 cut(s)	132
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	2 cut(s)	324, 456
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	1 cut(s)	119
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	2 cut(s)	231, 468
HspAI	GCGC	1 cut(s)	255
Kpn2I	TCCGGA	1 cut(s)	170
Kzo9I	GATC	3 cut(s)	196, 213, 295
LguI	GCTCTTC	1 cut(s)	425
Lsp1109I	GCAGC	1 cut(s)	296
MaeI	CTAG	3 cut(s)	146, 336, 345
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	4 cut(s)	5, 73, 132, 368
MalI	GATC	3 cut(s)	198, 215, 297
MboI	GATC	3 cut(s)	196, 213, 295
MboII	GAAGA	3 cut(s)	176, 351, 442
MflI	RGATCY	2 cut(s)	213, 295
MhlI	GDGCHC	1 cut(s)	326
MluCI	AATT	5 cut(s)	355, 414, 425, 460, 519
MlyI	GAGTC	2 cut(s)	13, 72
MnlI	CCTC	8 cut(s)	43, 228, 234, 283, 286, 392, 463, 510
MroI	TCCGGA	1 cut(s)	170
MroXI	GAANNNNTTC	1 cut(s)	256
MseI	TTAA	2 cut(s)	186, 273
MspCI	CTTAAG	1 cut(s)	272
MspI	CCGG	2 cut(s)	60, 171
MspR9I	CCNGG	2 cut(s)	60, 366
MvaI	CCWGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	1 cut(s)	50
NciI	CCSGG	1 cut(s)	60
NdeII	GATC	3 cut(s)	196, 213, 295
NlaIII	CATG	2 cut(s)	231, 468
NlaIV	GGNNCC	2 cut(s)	243, 297
NmuCI	GTSAC	3 cut(s)	5, 73, 132
PciSI	GCTCTTC	1 cut(s)	425
PdmI	GAANNNNTTC	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	286
PleI	GAGTC	2 cut(s)	12, 71
PpsI	GAGTC	2 cut(s)	12, 71
PsiI	TTATAA	1 cut(s)	529
Psp6I	CCWGG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	2 cut(s)	243, 297
PsrI	GAACNNNNNNTAC	2 cut(s)	322, 354
PstNI	CAGNNNCTG	1 cut(s)	104
PsuI	RGATCY	2 cut(s)	213, 295
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
SapI	GCTCTTC	1 cut(s)	425
SaqAI	TTAA	2 cut(s)	186, 273
SatI	GCNGC	1 cut(s)	285
Sau3AI	GATC	3 cut(s)	196, 213, 295
ScaI	AGTACT	1 cut(s)	340
SchI	GAGTC	2 cut(s)	13, 72
ScrFI	CCNGG	2 cut(s)	60, 366
SduI	GDGCHC	1 cut(s)	326
SetI	ASST	8 cut(s)	18, 75, 151, 159, 243, 370, 474, 498
SfcI	CTRYAG	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
SpeI	ACTAGT	2 cut(s)	335, 344
Sse9I	AATT	5 cut(s)	355, 414, 425, 460, 519
SspMI	CTAG	3 cut(s)	146, 336, 345
StyD4I	CCNGG	2 cut(s)	58, 364
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	132
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	1 cut(s)	422
TasI	AATT	5 cut(s)	355, 414, 425, 460, 519
TatI	WGTACW	1 cut(s)	338
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	2 cut(s)	186, 273
Tru9I	TTAA	2 cut(s)	186, 273
TseFI	GTSAC	3 cut(s)	5, 73, 132
TseI	GCWGC	1 cut(s)	284
Tsp45I	GTSAC	3 cut(s)	5, 73, 132
TspDTI	ATGAA	2 cut(s)	8, 453
Vha464I	CTTAAG	1 cut(s)	272
VneI	GTGCAC	1 cut(s)	322
XapI	RAATTY	3 cut(s)	355, 460, 519
XmnI	GAANNNNTTC	1 cut(s)	256
XspI	CTAG	3 cut(s)	146, 336, 345
ZrmI	AGTACT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.