Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010519

Physical Location & Seq

Genomic Coordinates Forward (+)

36311782 .. 36312421

Gene Structure 640 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G419300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAGCAGTGTCCAACATTCCCTAGGCAAGGTGCCCTTCTCATGGGAAAACATGCCTGGTGTCTCCAAAGCCACACAACCACCACACCCCTACAGAGAGCTGCCACCCCCACCTTGCCCTTGTGGTGAGGCTTCTCCTAAACTCTCTCTCCAAGATTTTCATCTGCCTTTGCCTCCCTGCACCTTTCAGCCCCTCTCAAGAAGCTCCTCCACAAAGGCTCTTAGAAAACATGAAGACCCTTTTCTAGTGGCCTTCCAAGAGTGCACCAAGCCCCCGGAGGGGAAGGCAAAGGACAAGACGACGTTGTCGAATAAATATTGGTTTCGATCTGGACTGGGGAGTTGGTTTGGGTTTGGCTTGTCGTGTAAACGGTCGAGCAGTGTAAGGGATGATAGTTTGGTCAGGGTGTCTCGGGTTCCCTATCATAGAGACAGAACACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF688

Protein Analysis

148

Amino Acids

16.5

Weight (kDa)

9.6

Isoelectric Point (pI)

74.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010519)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18210 FvH4_1g18210
prunus_persica	Prupe.1G419300_v2.0.a1 Prupe.6G217200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0108721
rosa_laevigata	RLG00000010517 RLG00000017687
rosa_multiflora	Rmu_co8494099.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134870 Rroxscaffold_7G00158960
rosa_rugosa	Rorug02G0155300 Rorug06G0376900
rosa_samantha	Rh2AG205500 Rh2BG217200 Rh2CG208300 Rh2DG211600 Rh6AG490500 Rh6BG500000 Rh6CG504900 Rh6DG490900
rosa_wichuraiana	Rw2G016350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	304
AccB1I	GGYRCC	1 cut(s)	31
AfiI	CCNNNNNNNGG	4 cut(s)	28, 42, 278, 279
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	2 cut(s)	100, 204
AluI	AGCT	2 cut(s)	100, 204
Alw21I	GWGCWC	1 cut(s)	266
Alw26I	GTCTC	3 cut(s)	67, 414, 423
Alw44I	GTGCAC	1 cut(s)	262
Ama87I	CYCGRG	1 cut(s)	411
AoxI	GGCC	1 cut(s)	249
ApaLI	GTGCAC	1 cut(s)	262
ApeKI	GCWGC	1 cut(s)	100
AspA2I	CCTAGG	1 cut(s)	22
AsuC2I	CCSGG	1 cut(s)	275
AsuHPI	GGTGA	1 cut(s)	137
AvaI	CYCGRG	1 cut(s)	411
AvrII	CCTAGG	1 cut(s)	22
BaeGI	GKGCMC	2 cut(s)	36, 266
BanI	GGYRCC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	266
BbvI	GCAGC	1 cut(s)	87
BciT130I	CCWGG	1 cut(s)	57
BcnI	CCSGG	1 cut(s)	275
BcoDI	GTCTC	3 cut(s)	67, 414, 423
BfaI	CTAG	2 cut(s)	23, 245
BfmI	CTRYAG	1 cut(s)	91
BisI	GCNGC	1 cut(s)	101
BlnI	CCTAGG	1 cut(s)	22
BlsI	GCNGC	1 cut(s)	102
Bme1390I	CCNGG	2 cut(s)	57, 275
BmeT110I	CYCGRG	1 cut(s)	411
BmiI	GGNNCC	2 cut(s)	33, 417
BmrFI	CCNGG	2 cut(s)	57, 275
BmrI	ACTGGG	1 cut(s)	344
BmuI	ACTGGG	1 cut(s)	344
BpiI	GAAGAC	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	181
BpuMI	CCSGG	1 cut(s)	275
BsaBI	GATNNNNATC	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	22, 273
BsaXI	ACNNNNNCTCC	2 cut(s)	132, 162
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 42, 278, 279
Bse1I	ACTGG	1 cut(s)	339
Bse8I	GATNNNNATC	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	22, 273
BseGI	GGATG	1 cut(s)	394
BseJI	GATNNNNATC	1 cut(s)	159
BseLI	CCNNNNNNNGG	4 cut(s)	28, 42, 278, 279
BseNI	ACTGG	1 cut(s)	339
BseRI	GAGGAG	1 cut(s)	196
BseSI	GKGCMC	2 cut(s)	36, 266
BseXI	GCAGC	1 cut(s)	87
BsgI	GTGCAG	1 cut(s)	163
Bsh1285I	CGRYCG	1 cut(s)	374
BshFI	GGCC	1 cut(s)	251
BshNI	GGYRCC	1 cut(s)	31
BsiEI	CGRYCG	1 cut(s)	374
BsiHKAI	GWGCWC	1 cut(s)	266
BsiHKCI	CYCGRG	1 cut(s)	411
BsiSI	CCGG	1 cut(s)	275
BslI	CCNNNNNNNGG	4 cut(s)	28, 42, 278, 279
BsmAI	GTCTC	3 cut(s)	67, 414, 423
BsnI	GGCC	1 cut(s)	251
BsoBI	CYCGRG	1 cut(s)	411
Bsp1286I	GDGCHC	2 cut(s)	36, 266
Bsp143I	GATC	1 cut(s)	326
BspANI	GGCC	1 cut(s)	251
BspLI	GGNNCC	2 cut(s)	33, 417
BspT107I	GGYRCC	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	339
BssECI	CCNNGG	2 cut(s)	22, 273
BssMI	GATC	1 cut(s)	326
BssT1I	CCWWGG	1 cut(s)	22
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	372
BstDEI	CTNAG	1 cut(s)	221
BstENI	CCTNNNNNAGG	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	394
BstKTI	GATC	1 cut(s)	329
BstMAI	GTCTC	3 cut(s)	67, 414, 423
BstMBI	GATC	1 cut(s)	326
BstMCI	CGRYCG	1 cut(s)	374
BstNI	CCWGG	1 cut(s)	57
BstNSI	RCATGY	1 cut(s)	55
BstSCI	CCNGG	2 cut(s)	55, 273
BstSFI	CTRYAG	1 cut(s)	91
BstSLI	GKGCMC	2 cut(s)	36, 266
BstV1I	GCAGC	1 cut(s)	87
BstV2I	GAAGAC	1 cut(s)	240
BsuRI	GGCC	1 cut(s)	251
BtsCI	GGATG	1 cut(s)	394
BtsI	GCAGTG	2 cut(s)	13, 385
BtsIMutI	CAGTG	2 cut(s)	13, 385
CviAII	CATG	3 cut(s)	42, 52, 230
CviJI	RGCY	9 cut(s)	71, 100, 131, 190, 204, 218, 251, 271, 357
CviKI_1	RGCY	9 cut(s)	71, 100, 131, 190, 204, 218, 251, 271, 357
DdeI	CTNAG	1 cut(s)	221
DpnI	GATC	1 cut(s)	328
DpnII	GATC	1 cut(s)	326
DrdI	GACNNNNNNGTC	1 cut(s)	304
DseDI	GACNNNNNNGTC	1 cut(s)	304
Eco130I	CCWWGG	1 cut(s)	22
Eco88I	CYCGRG	1 cut(s)	411
EcoNI	CCTNNNNNAGG	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	22
ErhI	CCWWGG	1 cut(s)	22
FaeI	CATG	3 cut(s)	45, 55, 233
FaiI	YATR	4 cut(s)	43, 53, 231, 426
FalI	AAGNNNNNCTT	2 cut(s)	20, 52
FatI	CATG	3 cut(s)	41, 51, 229
Fnu4HI	GCNGC	1 cut(s)	101
FokI	GGATG	1 cut(s)	401
Fsp4HI	GCNGC	1 cut(s)	101
FspBI	CTAG	2 cut(s)	23, 245
GluI	GCNGC	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	1 cut(s)	275
Hin1II	CATG	3 cut(s)	45, 55, 233
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	1 cut(s)	137
Hpy166II	GTNNAC	2 cut(s)	264, 368
Hpy188III	TCNNGA	2 cut(s)	198, 330
Hpy8I	GTNNAC	2 cut(s)	264, 368
Hpy99I	CGWCG	1 cut(s)	304
HpyAV	CCTTC	3 cut(s)	46, 262, 277
HpyCH4III	ACNGT	1 cut(s)	372
HpyCH4IV	ACGT	1 cut(s)	302
HpyCH4V	TGCA	2 cut(s)	180, 264
HpyF3I	CTNAG	1 cut(s)	221
HpySE526I	ACGT	1 cut(s)	302
Hsp92II	CATG	3 cut(s)	45, 55, 233
Kzo9I	GATC	1 cut(s)	326
LmnI	GCTCC	1 cut(s)	209
LpnPI	CCDG	7 cut(s)	42, 69, 190, 288, 315, 320, 388
Lsp1109I	GCAGC	1 cut(s)	87
MaeI	CTAG	2 cut(s)	23, 245
MaeII	ACGT	1 cut(s)	302
MalI	GATC	1 cut(s)	328
MboI	GATC	1 cut(s)	326
MboII	GAAGA	1 cut(s)	245
MhlI	GDGCHC	2 cut(s)	36, 266
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	5 cut(s)	121, 183, 203, 217, 271
MspI	CCGG	1 cut(s)	275
MspR9I	CCNGG	2 cut(s)	57, 275
MvaI	CCWGG	1 cut(s)	57
NciI	CCSGG	1 cut(s)	275
NdeII	GATC	1 cut(s)	326
NlaIII	CATG	3 cut(s)	45, 55, 233
NlaIV	GGNNCC	2 cut(s)	33, 417
NspI	RCATGY	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	1 cut(s)	305
PflFI	GACNNNGTC	1 cut(s)	304
PkrI	GCNGC	1 cut(s)	102
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	2 cut(s)	33, 417
PsyI	GACNNNGTC	1 cut(s)	304
SatI	GCNGC	1 cut(s)	101
Sau3AI	GATC	1 cut(s)	326
ScrFI	CCNGG	2 cut(s)	57, 275
SduI	GDGCHC	2 cut(s)	36, 266
SetI	ASST	6 cut(s)	33, 102, 115, 185, 206, 305
SfcI	CTRYAG	1 cut(s)	91
SmlI	CTYRAG	1 cut(s)	196
SmoI	CTYRAG	1 cut(s)	196
SspI	AATATT	1 cut(s)	317
SspMI	CTAG	2 cut(s)	23, 245
StyD4I	CCNGG	2 cut(s)	55, 273
StyI	CCWWGG	1 cut(s)	22
TaaI	ACNGT	1 cut(s)	372
TaiI	ACGT	1 cut(s)	305
TaqI	TCGA	3 cut(s)	308, 325, 374
TscAI	CASTG	2 cut(s)	13, 385
TseI	GCWGC	1 cut(s)	100
TspDTI	ATGAA	2 cut(s)	149, 246
TspRI	CASTG	2 cut(s)	13, 385
Tth111I	GACNNNGTC	1 cut(s)	304
VneI	GTGCAC	1 cut(s)	262
XagI	CCTNNNNNAGG	1 cut(s)	26
XceI	RCATGY	1 cut(s)	55
XmaJI	CCTAGG	1 cut(s)	22
XspI	CTAG	2 cut(s)	23, 245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.