Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010519

Physical Location & Seq

Genomic Coordinates Forward (+)

22418828 .. 22420130

Gene Structure 1303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G217200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAGCCACAGAAAAGTTCATTCACAAGGGAGCGTACCCTTTTCATGGGAGGCCATGCCCGGCGTCTCCAAGGTCACAAATCAAGACTGCCCTACAGATTTTGGGGTTGGTGCCCTTAACTGCCTCTCTGCAGAAGAAGACTCTGGAGATAGCCCCAATAAGTTGGTGAACAATCCTGAGATAAAGATTCCTCTGCCTCCATGCCCATTATTGAAGGCTCCGAGTAGAAGTAGTTCGACGAAGGGGTTTAGATGGCATGTAGAAGCAGACCCCTTTCTTCTGGCTTACAAAGAGTGCACCAAAAGTACAAGCACTTTGAATAATAATTCAGGTAAGCTGCCTGGCATTGAGAATAATAAGAAAGGTTTCGGTGCAATTGGGTGTAAAGTCAGGAAGAGCAGGTTCAATATGTTTTCTTGCAAGAATTCATGCGATGTGAGAGAGGATAATTTTGTAAAGCTGTCTCAGCTTCCTGCTCTTCCGAGAGACACAAGTGGCTCAACCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

170

Amino Acids

18.42

Weight (kDa)

9.14

Isoelectric Point (pI)

58.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010519)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18210 FvH4_1g18210
prunus_persica	Prupe.1G419300_v2.0.a1 Prupe.6G217200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0108721
rosa_laevigata	RLG00000010517 RLG00000017687
rosa_multiflora	Rmu_co8494099.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134870 Rroxscaffold_7G00158960
rosa_rugosa	Rorug02G0155300 Rorug06G0376900
rosa_samantha	Rh2AG205500 Rh2BG217200 Rh2CG208300 Rh2DG211600 Rh6AG490500 Rh6BG500000 Rh6CG504900 Rh6DG490900
rosa_wichuraiana	Rw2G016350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	390
AccB1I	GGYRCC	1 cut(s)	110
AcsI	RAATTY	1 cut(s)	424
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	2 cut(s)	36, 307
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgsI	TTSAA	3 cut(s)	214, 319, 406
AjnI	CCWGG	1 cut(s)	340
AluBI	AGCT	3 cut(s)	337, 460, 469
AluI	AGCT	3 cut(s)	337, 460, 469
Alw21I	GWGCWC	1 cut(s)	299
Alw26I	GTCTC	3 cut(s)	70, 468, 480
Alw44I	GTGCAC	1 cut(s)	295
AoxI	GGCC	1 cut(s)	51
ApaLI	GTGCAC	1 cut(s)	295
ApeKI	GCWGC	1 cut(s)	337
ApoI	RAATTY	1 cut(s)	424
Asp700I	GAANNNNTTC	2 cut(s)	232, 365
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	1 cut(s)	178
BaeGI	GKGCMC	2 cut(s)	115, 299
BanI	GGYRCC	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	299
BbvI	GCAGC	1 cut(s)	324
BccI	CCATC	1 cut(s)	246
BciT130I	CCWGG	1 cut(s)	342
BcnI	CCSGG	1 cut(s)	60
BcoDI	GTCTC	3 cut(s)	70, 468, 480
BfmI	CTRYAG	2 cut(s)	93, 129
BfuAI	ACCTGC	1 cut(s)	390
BisI	GCNGC	1 cut(s)	338
BlsI	GCNGC	1 cut(s)	339
Bme1390I	CCNGG	2 cut(s)	60, 342
BmiI	GGNNCC	2 cut(s)	112, 219
BmrFI	CCNGG	2 cut(s)	60, 342
BpiI	GAAGAC	1 cut(s)	144
BpmI	CTGGAG	1 cut(s)	165
BpuMI	CCSGG	1 cut(s)	60
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	69
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMII	CTCAG	2 cut(s)	168, 479
BseSI	GKGCMC	2 cut(s)	115, 299
BseXI	GCAGC	1 cut(s)	324
BshFI	GGCC	1 cut(s)	53
BshNI	GGYRCC	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	299
BsiSI	CCGG	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmAI	GTCTC	3 cut(s)	70, 468, 480
BsmBI	CGTCTC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	53
Bsp1286I	GDGCHC	2 cut(s)	115, 299
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	2 cut(s)	169, 478
BspLI	GGNNCC	2 cut(s)	112, 219
BspMAI	CTGCAG	1 cut(s)	133
BspMI	ACCTGC	1 cut(s)	390
BspQI	GCTCTTC	2 cut(s)	389, 483
BspT107I	GGYRCC	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	69
BssNI	GRCGYC	1 cut(s)	63
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	342
Bst6I	CTCTTC	2 cut(s)	389, 483
BstACI	GRCGYC	1 cut(s)	63
BstDEI	CTNAG	2 cut(s)	177, 465
BstMAI	GTCTC	3 cut(s)	70, 468, 480
BstMWI	GCNNNNNNNGC	1 cut(s)	466
BstNI	CCWGG	1 cut(s)	342
BstNSI	RCATGY	1 cut(s)	260
BstSCI	CCNGG	2 cut(s)	58, 340
BstSFI	CTRYAG	2 cut(s)	93, 129
BstSLI	GKGCMC	2 cut(s)	115, 299
BstV1I	GCAGC	1 cut(s)	324
BstV2I	GAAGAC	1 cut(s)	144
BstXI	CCANNNNNNTGG	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	53
BtgZI	GCGATG	1 cut(s)	447
BveI	ACCTGC	1 cut(s)	390
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	2 cut(s)	35, 306
CviAII	CATG	5 cut(s)	45, 55, 201, 257, 429
CviJI	RGCY	9 cut(s)	6, 53, 153, 218, 284, 337, 460, 469, 498
CviKI_1	RGCY	9 cut(s)	6, 53, 153, 218, 284, 337, 460, 469, 498
CviQI	GTAC	2 cut(s)	35, 306
DdeI	CTNAG	2 cut(s)	177, 465
Eam1104I	CTCTTC	2 cut(s)	389, 483
EarI	CTCTTC	2 cut(s)	389, 483
Eco130I	CCWWGG	1 cut(s)	69
EcoRI	GAATTC	1 cut(s)	424
EcoRII	CCWGG	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
Esp3I	CGTCTC	1 cut(s)	70
FaeI	CATG	5 cut(s)	48, 58, 204, 260, 432
FaiI	YATR	6 cut(s)	46, 56, 202, 258, 410, 430
FatI	CATG	5 cut(s)	44, 54, 200, 256, 428
Fnu4HI	GCNGC	1 cut(s)	338
Fsp4HI	GCNGC	1 cut(s)	338
GluI	GCNGC	1 cut(s)	338
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	1 cut(s)	60
HgaI	GACGC	1 cut(s)	52
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	5 cut(s)	48, 58, 204, 260, 432
HinfI	GANTC	2 cut(s)	140, 187
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	2 cut(s)	169, 297
Hpy188I	TCNGA	2 cut(s)	222, 483
Hpy188III	TCNNGA	4 cut(s)	83, 144, 176, 391
Hpy8I	GTNNAC	2 cut(s)	169, 297
Hpy99I	CGWCG	1 cut(s)	241
HpyAV	CCTTC	2 cut(s)	208, 235
HpyCH4V	TGCA	4 cut(s)	131, 297, 374, 420
HpyF10VI	GCNNNNNNNGC	1 cut(s)	466
HpyF3I	CTNAG	2 cut(s)	177, 465
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	5 cut(s)	48, 58, 204, 260, 432
LguI	GCTCTTC	2 cut(s)	389, 483
LmnI	GCTCC	2 cut(s)	30, 223
Lsp1109I	GCAGC	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	73
MboII	GAAGA	5 cut(s)	146, 149, 269, 406, 470
MfeI	CAATTG	1 cut(s)	375
MhlI	GDGCHC	2 cut(s)	115, 299
MluCI	AATT	4 cut(s)	325, 375, 424, 448
MlyI	GAGTC	1 cut(s)	134
MnlI	CCTC	5 cut(s)	43, 134, 201, 207, 436
MroXI	GAANNNNTTC	2 cut(s)	232, 365
MseI	TTAA	1 cut(s)	117
MspI	CCGG	1 cut(s)	60
MspR9I	CCNGG	2 cut(s)	60, 342
MunI	CAATTG	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	342
MwoI	GCNNNNNNNGC	1 cut(s)	466
NciI	CCSGG	1 cut(s)	60
NlaIII	CATG	5 cut(s)	48, 58, 204, 260, 432
NlaIV	GGNNCC	2 cut(s)	112, 219
NmuCI	GTSAC	1 cut(s)	73
NspI	RCATGY	1 cut(s)	260
PciSI	GCTCTTC	2 cut(s)	389, 483
PdmI	GAANNNNTTC	2 cut(s)	232, 365
PfeI	GAWTC	1 cut(s)	187
PkrI	GCNGC	1 cut(s)	339
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
Psp6I	CCWGG	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	2 cut(s)	112, 219
PsrI	GAACNNNNNNTAC	2 cut(s)	217, 249
PstI	CTGCAG	1 cut(s)	133
RsaI	GTAC	2 cut(s)	36, 307
RsaNI	GTAC	2 cut(s)	35, 306
SapI	GCTCTTC	2 cut(s)	389, 483
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	1 cut(s)	338
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	2 cut(s)	60, 342
SduI	GDGCHC	2 cut(s)	115, 299
SetI	ASST	7 cut(s)	75, 334, 339, 367, 404, 462, 471
SfcI	CTRYAG	2 cut(s)	93, 129
Sse9I	AATT	4 cut(s)	325, 375, 424, 448
StyD4I	CCNGG	2 cut(s)	58, 340
StyI	CCWWGG	1 cut(s)	69
TaqI	TCGA	1 cut(s)	236
TasI	AATT	4 cut(s)	325, 375, 424, 448
TatI	WGTACW	1 cut(s)	305
TfiI	GAWTC	1 cut(s)	187
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	337
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	3 cut(s)	8, 33, 417
VneI	GTGCAC	1 cut(s)	295
XapI	RAATTY	1 cut(s)	424
XceI	RCATGY	1 cut(s)	260
XmnI	GAANNNNTTC	2 cut(s)	232, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.