Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0010519

Physical Location & Seq

Genomic Coordinates Reverse (-)

66708385 .. 66709850

Gene Structure 1466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG490500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGACTACTACTACTATTCACAGTCGCAGCAATAGCAAGCTCCAGTTCTACTCCAGAGGCACTGTGCCCTTCTCTTGGGAAAACAAGCCCGGAGTCTCCAAGCTGTCACACACCACTGAAGCGAAAACGGAGTACTACTTCATCAAGGACGACGATTACAAACTACCACCACCGCCTTTCCACGGGGACTACCAGCTCCCTCTTCCTCCTCCCTGCACTTTCGAGGCGCCCATTTCTAGGAGCTCCTCCATTAAAGGCTTGATCAGCAACAAAGCCGAAACCGATGACCCTTTTCAAATGGCCATCCTCGAGTGCACCAAGTCGATCCACAATGGTGGTGGCAATGATAGTGGGGATGTTGCTACCAAAGGTAGGAGGAAAACATCGTTGTCTTTGTCCCCGAAACATTACGGTGGGTTTGGATCTGGACTGAGAAGTTTGTTCGGGTCCTTATCGTGTAAATGCTCCAGCAGTGTAAGGGATGAAAGTTTGGTTAAGGTCTCTCGGGTTGACGGGTTCCATCTTCCATACCAGAGAGATACAGTTGTTAAAATACCACAACTCCACAAGAAGGAAGAAAAAAAAAACCCTAAAATCCGAACTGAATTCTATCTATCCCCTGATTCCCCTCTATCGTCTTTTTTCTCCTTCTCCTTTCTTTTTCTTCCTCTGCCTTTCGGAATCAAAGTATTAGCACGTGAAAAAGACCTGAAGATTGAGATGAAAACTCTCCAAAGGTCCAATTTCATGAAACGATTTAAGGAATTAAGGGTGATCATTAGCATTTGTGTTATTTGTTCTCTACTGCAACTGCATTTAAAGAAAATCCCAGTTCGTCAGTTCTTCGTTCATTCAGATTTTTTTGTTTTTCGTCTTCAAGGAGTTAACGGCAGCGTTAAGAAAGTTGAGAAGAAAAAGACCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF688

Protein Analysis

308

Amino Acids

34.92

Weight (kDa)

9.75

Isoelectric Point (pI)

55.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010519)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18210 FvH4_1g18210
prunus_persica	Prupe.1G419300_v2.0.a1 Prupe.6G217200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0108721
rosa_laevigata	RLG00000010517 RLG00000017687
rosa_multiflora	Rmu_co8494099.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134870 Rroxscaffold_7G00158960
rosa_rugosa	Rorug02G0155300 Rorug06G0376900
rosa_samantha	Rh2AG205500 Rh2BG217200 Rh2CG208300 Rh2DG211600 Rh6AG490500 Rh6BG500000 Rh6CG504900 Rh6DG490900
rosa_wichuraiana	Rw2G016350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	226
AciI	CCGC	1 cut(s)	173
AclWI	GGATC	2 cut(s)	319, 430
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	1 cut(s)	605
AcuI	CTGAAG	2 cut(s)	138, 731
AcvI	CACGTG	1 cut(s)	698
AcyI	GRCGYC	1 cut(s)	227
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	5 cut(s)	75, 182, 237, 372, 571
AgsI	TTSAA	2 cut(s)	296, 878
AleI	CACNNNNGTG	1 cut(s)	333
AluBI	AGCT	4 cut(s)	40, 103, 196, 243
AluI	AGCT	4 cut(s)	40, 103, 196, 243
Alw21I	GWGCWC	2 cut(s)	245, 317
Alw26I	GTCTC	2 cut(s)	100, 505
Alw44I	GTGCAC	1 cut(s)	313
AlwI	GGATC	2 cut(s)	319, 430
Ama87I	CYCGRG	2 cut(s)	308, 504
AoxI	GGCC	1 cut(s)	300
ApaLI	GTGCAC	1 cut(s)	313
ApeKI	GCWGC	2 cut(s)	27, 891
ApoI	RAATTY	1 cut(s)	605
AspLEI	GCGC	1 cut(s)	229
AspS9I	GGNCC	2 cut(s)	447, 738
AsuC2I	CCSGG	1 cut(s)	90
AsuHPI	GGTGA	1 cut(s)	784
AvaI	CYCGRG	2 cut(s)	308, 504
AvaII	GGWCC	2 cut(s)	447, 738
BaeGI	GKGCMC	2 cut(s)	69, 317
BaeI	ACNNNNGTAYC	2 cut(s)	531, 564
BalI	TGGCCA	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	226
BanII	GRGCYC	1 cut(s)	245
BbrPI	CACGTG	1 cut(s)	698
BbsI	GAAGAC	1 cut(s)	866
Bbv12I	GWGCWC	2 cut(s)	245, 317
BbvI	GCAGC	2 cut(s)	39, 903
BccI	CCATC	2 cut(s)	311, 528
BceAI	ACGGC	1 cut(s)	904
BclI	TGATCA	2 cut(s)	261, 774
BcnI	CCSGG	1 cut(s)	90
BcoDI	GTCTC	2 cut(s)	100, 505
BfaI	CTAG	1 cut(s)	237
BfoI	RGCGCY	1 cut(s)	230
BisI	GCNGC	2 cut(s)	28, 892
BlsI	GCNGC	2 cut(s)	29, 893
BmcAI	AGTACT	1 cut(s)	134
Bme1390I	CCNGG	1 cut(s)	90
Bme18I	GGWCC	2 cut(s)	447, 738
BmeT110I	CYCGRG	2 cut(s)	308, 504
BmgT120I	GGNCC	2 cut(s)	447, 738
BmiI	GGNNCC	3 cut(s)	228, 448, 518
BmrFI	CCNGG	1 cut(s)	90
BmrI	ACTGGG	1 cut(s)	824
BmuI	ACTGGG	1 cut(s)	824
BpiI	GAAGAC	1 cut(s)	866
BpmI	CTGGAG	3 cut(s)	26, 37, 451
BpuMI	CCSGG	1 cut(s)	90
BsaAI	YACGTR	1 cut(s)	698
BsaHI	GRCGYC	1 cut(s)	227
BsaI	GGTCTC	1 cut(s)	505
BsaJI	CCNNGG	1 cut(s)	181
BsaXI	ACNNNNNCTCC	2 cut(s)	546, 576
Bsc4I	CCNNNNNNNGG	5 cut(s)	75, 182, 237, 372, 571
Bse1I	ACTGG	2 cut(s)	43, 830
Bse3DI	GCAATG	1 cut(s)	349
BseDI	CCNNGG	1 cut(s)	181
BseGI	GGATG	3 cut(s)	303, 361, 487
BseLI	CCNNNNNNNGG	5 cut(s)	75, 182, 237, 372, 571
BseMI	GCAATG	1 cut(s)	349
BseMII	CTCAG	1 cut(s)	422
BseNI	ACTGG	2 cut(s)	43, 830
BseRI	GAGGAG	2 cut(s)	198, 235
BseSI	GKGCMC	2 cut(s)	69, 317
BseXI	GCAGC	2 cut(s)	39, 903
BsgI	GTGCAG	1 cut(s)	199
BshFI	GGCC	1 cut(s)	302
BshNI	GGYRCC	1 cut(s)	226
BsiHKAI	GWGCWC	2 cut(s)	245, 317
BsiHKCI	CYCGRG	2 cut(s)	308, 504
BsiSI	CCGG	1 cut(s)	90
BslFI	GGGAC	2 cut(s)	200, 382
BslI	CCNNNNNNNGG	5 cut(s)	75, 182, 237, 372, 571
BsmAI	GTCTC	2 cut(s)	100, 505
BsmFI	GGGAC	2 cut(s)	200, 382
BsnI	GGCC	1 cut(s)	302
Bso31I	GGTCTC	1 cut(s)	505
BsoBI	CYCGRG	2 cut(s)	308, 504
Bsp1286I	GDGCHC	3 cut(s)	69, 245, 317
Bsp143I	GATC	4 cut(s)	261, 324, 422, 774
BspACI	CCGC	1 cut(s)	173
BspANI	GGCC	1 cut(s)	302
BspCNI	CTCAG	1 cut(s)	423
BspHI	TCATGA	1 cut(s)	747
BspLI	GGNNCC	3 cut(s)	228, 448, 518
BspPI	GGATC	2 cut(s)	319, 430
BspT107I	GGYRCC	1 cut(s)	226
BspTNI	GGTCTC	1 cut(s)	505
BsrDI	GCAATG	1 cut(s)	349
BsrI	ACTGG	2 cut(s)	43, 830
BssECI	CCNNGG	1 cut(s)	181
BssMI	GATC	4 cut(s)	261, 324, 422, 774
BssNI	GRCGYC	1 cut(s)	227
Bst4CI	ACNGT	4 cut(s)	23, 64, 413, 544
Bst6I	CTCTTC	1 cut(s)	207
BstACI	GRCGYC	1 cut(s)	227
BstBAI	YACGTR	1 cut(s)	698
BstC8I	GCNNGC	1 cut(s)	38
BstDEI	CTNAG	1 cut(s)	431
BstDSI	CCRYGG	1 cut(s)	181
BstF5I	GGATG	3 cut(s)	303, 361, 487
BstH2I	RGCGCY	1 cut(s)	230
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	4 cut(s)	264, 327, 425, 777
BstMAI	GTCTC	2 cut(s)	100, 505
BstMBI	GATC	4 cut(s)	261, 324, 422, 774
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 264
BstSCI	CCNGG	1 cut(s)	88
BstSLI	GKGCMC	2 cut(s)	69, 317
BstV1I	GCAGC	2 cut(s)	39, 903
BstV2I	GAAGAC	1 cut(s)	866
BstX2I	RGATCY	1 cut(s)	422
BstXI	CCANNNNNNTGG	1 cut(s)	335
BstYI	RGATCY	1 cut(s)	422
BsuRI	GGCC	1 cut(s)	302
BtgI	CCRYGG	1 cut(s)	181
BtsCI	GGATG	3 cut(s)	303, 361, 487
BtsI	GCAGTG	1 cut(s)	478
BtsIMutI	CAGTG	3 cut(s)	60, 114, 478
Cac8I	GCNNGC	1 cut(s)	38
CciI	TCATGA	1 cut(s)	747
CfoI	GCGC	1 cut(s)	229
Cfr13I	GGNCC	2 cut(s)	447, 738
Csp6I	GTAC	1 cut(s)	133
CspCI	CAANNNNNGTGG	4 cut(s)	319, 331, 354, 366
CviAII	CATG	1 cut(s)	748
CviJI	RGCY	8 cut(s)	40, 88, 103, 196, 243, 258, 275, 302
CviKI_1	RGCY	8 cut(s)	40, 88, 103, 196, 243, 258, 275, 302
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	1 cut(s)	431
DinI	GGCGCC	1 cut(s)	228
DpnI	GATC	4 cut(s)	263, 326, 424, 776
DpnII	GATC	4 cut(s)	261, 324, 422, 774
DraI	TTTAAA	1 cut(s)	819
EaeI	YGGCCR	1 cut(s)	300
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Ecl136II	GAGCTC	1 cut(s)	243
Eco24I	GRGCYC	1 cut(s)	245
Eco31I	GGTCTC	1 cut(s)	505
Eco47I	GGWCC	2 cut(s)	447, 738
Eco53kI	GAGCTC	1 cut(s)	243
Eco57I	CTGAAG	2 cut(s)	138, 731
Eco72I	CACGTG	1 cut(s)	698
Eco88I	CYCGRG	2 cut(s)	308, 504
EcoICRI	GAGCTC	1 cut(s)	243
EcoO109I	RGGNCCY	1 cut(s)	447
EcoRI	GAATTC	1 cut(s)	605
EcoT38I	GRGCYC	1 cut(s)	245
EgeI	GGCGCC	1 cut(s)	228
EheI	GGCGCC	1 cut(s)	228
FaeI	CATG	1 cut(s)	751
FaiI	YATR	2 cut(s)	529, 749
FaqI	GGGAC	2 cut(s)	200, 382
FatI	CATG	1 cut(s)	747
FbaI	TGATCA	2 cut(s)	261, 774
Fnu4HI	GCNGC	2 cut(s)	28, 892
FokI	GGATG	3 cut(s)	290, 368, 494
FriOI	GRGCYC	1 cut(s)	245
Fsp4HI	GCNGC	2 cut(s)	28, 892
FspBI	CTAG	1 cut(s)	237
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	2 cut(s)	28, 892
GsuI	CTGGAG	3 cut(s)	26, 37, 451
HaeII	RGCGCY	1 cut(s)	230
HaeIII	GGCC	1 cut(s)	302
HapII	CCGG	1 cut(s)	90
HhaI	GCGC	1 cut(s)	229
Hin1I	GRCGYC	1 cut(s)	227
Hin1II	CATG	1 cut(s)	751
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HincII	GTYRAC	2 cut(s)	511, 886
HindII	GTYRAC	2 cut(s)	511, 886
HinfI	GANTC	3 cut(s)	93, 623, 681
HpaI	GTTAAC	1 cut(s)	886
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	1 cut(s)	784
Hpy166II	GTNNAC	3 cut(s)	315, 511, 886
Hpy188I	TCNGA	3 cut(s)	599, 680, 856
Hpy188III	TCNNGA	3 cut(s)	54, 426, 748
Hpy8I	GTNNAC	3 cut(s)	315, 511, 886
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	3 cut(s)	79, 565, 658
HpyCH4III	ACNGT	4 cut(s)	23, 64, 413, 544
HpyCH4IV	ACGT	1 cut(s)	697
HpyCH4V	TGCA	4 cut(s)	216, 315, 808, 814
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 264
HpyF3I	CTNAG	1 cut(s)	431
HpySE526I	ACGT	1 cut(s)	697
Hsp92I	GRCGYC	1 cut(s)	227
Hsp92II	CATG	1 cut(s)	751
HspAI	GCGC	1 cut(s)	227
KasI	GGCGCC	1 cut(s)	226
Ksp22I	TGATCA	2 cut(s)	261, 774
KspAI	GTTAAC	1 cut(s)	886
Kzo9I	GATC	4 cut(s)	261, 324, 422, 774
LmnI	GCTCC	5 cut(s)	45, 201, 240, 248, 470
Lsp1109I	GCAGC	2 cut(s)	39, 903
MaeI	CTAG	1 cut(s)	237
MaeII	ACGT	1 cut(s)	697
MaeIII	GTNAC	1 cut(s)	105
MalI	GATC	4 cut(s)	263, 326, 424, 776
MboI	GATC	4 cut(s)	261, 324, 422, 774
MboII	GAAGA	8 cut(s)	194, 515, 587, 656, 724, 835, 866, 922
MflI	RGATCY	1 cut(s)	422
MhlI	GDGCHC	3 cut(s)	69, 245, 317
MlsI	TGGCCA	1 cut(s)	302
MluCI	AATT	3 cut(s)	605, 742, 764
MluNI	TGGCCA	1 cut(s)	302
Mly113I	GGCGCC	1 cut(s)	227
MlyI	GAGTC	1 cut(s)	102
Mox20I	TGGCCA	1 cut(s)	302
MscI	TGGCCA	1 cut(s)	302
MseI	TTAA	8 cut(s)	252, 495, 549, 759, 767, 818, 885, 897
MslI	CAYNNNNRTG	2 cut(s)	333, 411
Msp20I	TGGCCA	1 cut(s)	302
MspI	CCGG	1 cut(s)	90
MspR9I	CCNGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	2 cut(s)	33, 264
NarI	GGCGCC	1 cut(s)	227
NciI	CCSGG	1 cut(s)	90
NdeII	GATC	4 cut(s)	261, 324, 422, 774
NlaIII	CATG	1 cut(s)	751
NlaIV	GGNNCC	3 cut(s)	228, 448, 518
NmuCI	GTSAC	1 cut(s)	105
OliI	CACNNNNGTG	1 cut(s)	333
PaeR7I	CTCGAG	1 cut(s)	308
PagI	TCATGA	1 cut(s)	747
PfeI	GAWTC	2 cut(s)	623, 681
PkrI	GCNGC	2 cut(s)	29, 893
PleI	GAGTC	1 cut(s)	101
PluTI	GGCGCC	1 cut(s)	230
PmaCI	CACGTG	1 cut(s)	698
PmlI	CACGTG	1 cut(s)	698
PpsI	GAGTC	1 cut(s)	101
Ppu21I	YACGTR	1 cut(s)	698
PpuMI	RGGWCCY	1 cut(s)	447
Psp124BI	GAGCTC	1 cut(s)	245
Psp5II	RGGWCCY	1 cut(s)	447
PspCI	CACGTG	1 cut(s)	698
PspN4I	GGNNCC	3 cut(s)	228, 448, 518
PspPI	GGNCC	2 cut(s)	447, 738
PspPPI	RGGWCCY	1 cut(s)	447
PspXI	VCTCGAGB	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	422
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
RseI	CAYNNNNRTG	2 cut(s)	333, 411
SacI	GAGCTC	1 cut(s)	245
SaqAI	TTAA	8 cut(s)	252, 495, 549, 759, 767, 818, 885, 897
SatI	GCNGC	2 cut(s)	28, 892
Sau3AI	GATC	4 cut(s)	261, 324, 422, 774
Sau96I	GGNCC	2 cut(s)	447, 738
ScaI	AGTACT	1 cut(s)	134
SchI	GAGTC	1 cut(s)	102
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	3 cut(s)	69, 245, 317
SetI	ASST	9 cut(s)	42, 105, 198, 245, 373, 501, 700, 711, 740
SfoI	GGCGCC	1 cut(s)	228
Sfr274I	CTCGAG	1 cut(s)	308
SinI	GGWCC	2 cut(s)	447, 738
SlaI	CTCGAG	1 cut(s)	308
SmiMI	CAYNNNNRTG	2 cut(s)	333, 411
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	3 cut(s)	605, 742, 764
SsiI	CCGC	1 cut(s)	173
SspDI	GGCGCC	1 cut(s)	226
SspMI	CTAG	1 cut(s)	237
SstI	GAGCTC	1 cut(s)	245
StyD4I	CCNGG	1 cut(s)	88
TaaI	ACNGT	4 cut(s)	23, 64, 413, 544
TaiI	ACGT	1 cut(s)	700
TaqI	TCGA	3 cut(s)	222, 309, 323
TasI	AATT	3 cut(s)	605, 742, 764
TatI	WGTACW	1 cut(s)	132
TfiI	GAWTC	2 cut(s)	623, 681
Tru1I	TTAA	8 cut(s)	252, 495, 549, 759, 767, 818, 885, 897
Tru9I	TTAA	8 cut(s)	252, 495, 549, 759, 767, 818, 885, 897
TscAI	CASTG	3 cut(s)	67, 121, 478
TseFI	GTSAC	1 cut(s)	105
TseI	GCWGC	2 cut(s)	27, 891
Tsp45I	GTSAC	1 cut(s)	105
TspDTI	ATGAA	6 cut(s)	130, 498, 736, 737, 764, 839
TspGWI	ACGGA	1 cut(s)	143
TspRI	CASTG	3 cut(s)	67, 121, 478
VneI	GTGCAC	1 cut(s)	313
VpaK11BI	GGWCC	2 cut(s)	447, 738
XapI	RAATTY	1 cut(s)	605
XcmI	CCANNNNNNNNNTGG	1 cut(s)	335
XhoI	CTCGAG	1 cut(s)	308
XspI	CTAG	1 cut(s)	237
ZrmI	AGTACT	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.