Rorug02G0155300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010519
Physical Location & Seq
Forward (+)
13849505 .. 13851326
1822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0155300.1

Sequence Viewer

Length: 1047 bp
ATGCCTCTGGAATCGCCACCGCCGCTAAAACTGCTTTGGTTTCTCCTCTTCATCTTAACAACCACCAATGCCGCCGCCCTAAGAACAACAACTCATGTTTTCAAAGAAGCGCCAAAGTTTTACAACTCCCCCAGCTGCCCTTCGCTCCAAAACGACTCCACCGTCTGCTCCGACGTGGCGGTCCACGTAGCGATGACCCTCGACGCAGCCTACCTCCGCGGCTCAATGGCGGCGATCCTCTCGGTCCTTCAACACTCTTCATGCCCGGAAAATGTCATCTTCCATTTCGTCGCGGCGGCTTCTTCTTCGAACTCGATACTTCTAACCCAAACCCTGTCGAGGTCGTTCCCTTATTTGAAATTCCGAGTCTACCCCTTCGGCGACTCCGCCGTGGCGGGGCTGATCTCCACCTCTATCCGGTCAGCCCTCGACTGCCCGCTCAACTACGCGCGCAACTACTTGGTCACTCTCCTCCCGCCATGTGTCCGCCGCGTGGTCTACCTCGACTCCGACCTCGTACTCGTCGACGACATTGCCAAGCTGGCCGCCACCCCTCTCGGGCCCCACGCGGTCCTCGCCGCGCCGGAGTACTGCAACGCCAACTTCACCACCTACTTCACGCCGTCGTTTTGGGCCAACCCAACTCTCTCCTTAACCTTCGAGGGCCGCGACGCTTGCTACTTCAACACAGGCGTCATGGTCATTGACCTCGACCGGTGGCGGGCCGGCGGCTACACGAACCGGATCGTCGAGTGGATGGAGCTCCAGAAGCGAATGCGGATCTACGAACTCGGGTCATTGCCTCCTTTTCTCCTAGTCTTCGCCGGAAACATCGCCTCCGTGGACCACAGCTGGAACCAGCACGGCCTCGGCGGTGACAACTTCCGAGGGTTGTGTCGGGATTTGCATCCCGGTCCGGTCAGCCTGCTCCATTGGAGCGGCAAAGGGAAACCGTGGGTCCGGCTCGACTCGAACCGGCCTTGCCCTTTGGATGCTCTGTGGGCCCCTTATGATCTGTTACAAACACCTTTCGCGCTAGAGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

348

Amino Acids

38.55

Weight (kDa)

6.74

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 62 - 321 5.7e-47 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 161, 179
AccBSI CCGCTC 2 cut(s) 439, 939
AccI GTMKAC 3 cut(s) 369, 498, 525
AccII CGCG 9 cut(s) 219, 293, 449, 451, 492, 569, 581, 669, 1034
AclWI GGATC 3 cut(s) 229, 752, 788
AcoI YGGCCR 1 cut(s) 543
AcsI RAATTY 1 cut(s) 359
AcyI GRCGYC 1 cut(s) 693
AfaI GTAC 2 cut(s) 519, 590
AfiI CCNNNNNNNGG 6 cut(s) 339, 396, 417, 493, 558, 721
AgeI ACCGGT 1 cut(s) 714
AgsI TTSAA 4 cut(s) 103, 251, 358, 685
AjiI CACGTC 1 cut(s) 175
AluBI AGCT 4 cut(s) 135, 541, 763, 852
AluI AGCT 4 cut(s) 135, 541, 763, 852
Alw21I GWGCWC 1 cut(s) 765
AlwI GGATC 3 cut(s) 229, 752, 788
Ama87I CYCGRG 2 cut(s) 557, 791
AoxI GGCC 8 cut(s) 543, 560, 633, 664, 723, 865, 977, 1002
ApaI GGGCCC 2 cut(s) 564, 1006
ApeKI GCWGC 2 cut(s) 135, 206
ApoI RAATTY 1 cut(s) 359
AsiGI ACCGGT 1 cut(s) 714
AspLEI GCGC 5 cut(s) 112, 451, 453, 583, 1036
AsuC2I CCSGG 2 cut(s) 266, 912
AsuHPI GGTGA 2 cut(s) 598, 887
AsuII TTCGAA 1 cut(s) 308
AvaI CYCGRG 2 cut(s) 557, 791
AvaII GGWCC 6 cut(s) 181, 244, 571, 844, 914, 958
BaeGI GKGCMC 2 cut(s) 564, 1006
BanII GRGCYC 3 cut(s) 564, 765, 1006
BbsI GAAGAC 1 cut(s) 811
Bbv12I GWGCWC 1 cut(s) 765
BbvI GCAGC 2 cut(s) 122, 218
BccI CCATC 1 cut(s) 751
BceAI ACGGC 3 cut(s) 374, 607, 880
BcgI CGANNNNNNTGC 2 cut(s) 515, 549
BcnI CCSGG 2 cut(s) 266, 912
BfaI CTAG 2 cut(s) 815, 1037
BfoI RGCGCY 1 cut(s) 113
BglI GCCNNNNNGGC 1 cut(s) 542
BmcAI AGTACT 1 cut(s) 590
Bme1390I CCNGG 2 cut(s) 266, 912
Bme18I GGWCC 6 cut(s) 181, 244, 571, 844, 914, 958
BmeT110I CYCGRG 2 cut(s) 557, 791
BmgBI CACGTC 1 cut(s) 175
BmiI GGNNCC 6 cut(s) 562, 563, 857, 959, 1004, 1005
BmrFI CCNGG 2 cut(s) 266, 912
BmsI GCATC 2 cut(s) 916, 982
BpiI GAAGAC 1 cut(s) 811
BpmI CTGGAG 1 cut(s) 749
Bpu14I TTCGAA 1 cut(s) 308
BpuMI CCSGG 2 cut(s) 266, 912
BsaAI YACGTR 1 cut(s) 187
BsaBI GATNNNNATC 1 cut(s) 906
BsaHI GRCGYC 1 cut(s) 693
BsaJI CCNNGG 6 cut(s) 217, 390, 840, 868, 886, 953
BsaWI WCCGGW 4 cut(s) 417, 714, 741, 916
BsaXI ACNNNNNCTCC 4 cut(s) 491, 521, 821, 851
Bsc4I CCNNNNNNNGG 6 cut(s) 339, 396, 417, 493, 558, 721
Bse118I RCCGGY 3 cut(s) 714, 725, 975
Bse3DI GCAATG 2 cut(s) 531, 797
Bse8I GATNNNNATC 1 cut(s) 906
BseDI CCNNGG 6 cut(s) 217, 390, 840, 868, 886, 953
BseGI GGATG 3 cut(s) 762, 907, 997
BseJI GATNNNNATC 1 cut(s) 906
BseLI CCNNNNNNNGG 6 cut(s) 339, 396, 417, 493, 558, 721
BseMI GCAATG 2 cut(s) 531, 797
BsePI GCGCGC 1 cut(s) 449
BseRI GAGGAG 2 cut(s) 35, 461
BseSI GKGCMC 2 cut(s) 564, 1006
BseXI GCAGC 2 cut(s) 122, 218
BseYI CCCAGC 1 cut(s) 131
Bsh1236I CGCG 9 cut(s) 219, 293, 449, 451, 492, 569, 581, 669, 1034
Bsh1285I CGRYCG 1 cut(s) 715
BshFI GGCC 8 cut(s) 545, 562, 635, 666, 725, 867, 979, 1004
BshTI ACCGGT 1 cut(s) 714
BsiEI CGRYCG 1 cut(s) 715
BsiHKAI GWGCWC 1 cut(s) 765
BsiHKCI CYCGRG 2 cut(s) 557, 791
BslI CCNNNNNNNGG 6 cut(s) 339, 396, 417, 493, 558, 721
BsmI GAATGC 1 cut(s) 780
BsnI GGCC 8 cut(s) 545, 562, 635, 666, 725, 867, 979, 1004
BsoBI CYCGRG 2 cut(s) 557, 791
Bsp119I TTCGAA 1 cut(s) 308
Bsp120I GGGCCC 2 cut(s) 560, 1002
Bsp1286I GDGCHC 3 cut(s) 564, 765, 1006
Bsp143I GATC 5 cut(s) 234, 402, 744, 780, 1012
BspANI GGCC 8 cut(s) 545, 562, 635, 666, 725, 867, 979, 1004
BspFNI CGCG 9 cut(s) 219, 293, 449, 451, 492, 569, 581, 669, 1034
BspLI GGNNCC 6 cut(s) 562, 563, 857, 959, 1004, 1005
BspPI GGATC 3 cut(s) 229, 752, 788
BspT104I TTCGAA 1 cut(s) 308
BsrBI CCGCTC 2 cut(s) 439, 939
BsrDI GCAATG 2 cut(s) 531, 797
BsrFI RCCGGY 3 cut(s) 714, 725, 975
BssAI RCCGGY 3 cut(s) 714, 725, 975
BssECI CCNNGG 6 cut(s) 217, 390, 840, 868, 886, 953
BssHII GCGCGC 1 cut(s) 449
BssMI GATC 5 cut(s) 234, 402, 744, 780, 1012
BssNI GRCGYC 1 cut(s) 693
Bst4CI ACNGT 2 cut(s) 163, 954
Bst6I CTCTTC 2 cut(s) 53, 262
BstACI GRCGYC 1 cut(s) 693
BstBAI YACGTR 1 cut(s) 187
BstBI TTCGAA 1 cut(s) 308
BstC8I GCNNGC 7 cut(s) 437, 451, 543, 676, 723, 727, 926
BstDEI CTNAG 2 cut(s) 80, 1044
BstDSI CCRYGG 4 cut(s) 217, 390, 840, 953
BstF5I GGATG 3 cut(s) 762, 907, 997
BstFNI CGCG 9 cut(s) 219, 293, 449, 451, 492, 569, 581, 669, 1034
BstH2I RGCGCY 1 cut(s) 113
BstHHI GCGC 5 cut(s) 112, 451, 453, 583, 1036
BstKTI GATC 5 cut(s) 237, 405, 747, 783, 1015
BstMBI GATC 5 cut(s) 234, 402, 744, 780, 1012
BstMCI CGRYCG 1 cut(s) 715
BstMWI GCNNNNNNNGC 7 cut(s) 22, 31, 542, 575, 675, 769, 1001
BstSCI CCNGG 2 cut(s) 264, 910
BstSLI GKGCMC 2 cut(s) 564, 1006
BstUI CGCG 9 cut(s) 219, 293, 449, 451, 492, 569, 581, 669, 1034
BstV1I GCAGC 2 cut(s) 122, 218
BstV2I GAAGAC 1 cut(s) 811
BstX2I RGATCY 1 cut(s) 780
BstYI RGATCY 1 cut(s) 780
BsuRI GGCC 8 cut(s) 545, 562, 635, 666, 725, 867, 979, 1004
BtgI CCRYGG 4 cut(s) 217, 390, 840, 953
BtgZI GCGATG 2 cut(s) 206, 817
BtrI CACGTC 1 cut(s) 175
BtsCI GGATG 3 cut(s) 762, 907, 997
Cac8I GCNNGC 7 cut(s) 437, 451, 543, 676, 723, 727, 926
CfoI GCGC 5 cut(s) 112, 451, 453, 583, 1036
Cfr10I RCCGGY 3 cut(s) 714, 725, 975
Cfr42I CCGCGG 1 cut(s) 220
CpoI CGGWCCG 1 cut(s) 914
CseI GACGC 3 cut(s) 212, 680, 682
Csp6I GTAC 2 cut(s) 518, 589
CspAI ACCGGT 1 cut(s) 714
CspI CGGWCCG 1 cut(s) 914
CviAII CATG 4 cut(s) 95, 261, 480, 697
CviQI GTAC 2 cut(s) 518, 589
DdeI CTNAG 2 cut(s) 80, 1044
DpnI GATC 5 cut(s) 236, 404, 746, 782, 1014
DpnII GATC 5 cut(s) 234, 402, 744, 780, 1012
DrdI GACNNNNNNGTC 2 cut(s) 161, 179
DseDI GACNNNNNNGTC 2 cut(s) 161, 179
EaeI YGGCCR 1 cut(s) 543
Eam1104I CTCTTC 2 cut(s) 53, 262
EarI CTCTTC 2 cut(s) 53, 262
EciI GGCGGA 2 cut(s) 376, 476
Ecl136II GAGCTC 1 cut(s) 763
Eco24I GRGCYC 3 cut(s) 564, 765, 1006
Eco47I GGWCC 6 cut(s) 181, 244, 571, 844, 914, 958
Eco53kI GAGCTC 1 cut(s) 763
Eco88I CYCGRG 2 cut(s) 557, 791
EcoICRI GAGCTC 1 cut(s) 763
EcoO109I RGGNCCY 2 cut(s) 561, 1003
EcoT38I GRGCYC 3 cut(s) 564, 765, 1006
FaeI CATG 4 cut(s) 98, 264, 483, 700
FaiI YATR 5 cut(s) 96, 262, 481, 698, 1011
FatI CATG 4 cut(s) 94, 260, 479, 696
FauI CCCGC 4 cut(s) 388, 444, 483, 714
FblI GTMKAC 3 cut(s) 369, 498, 525
FokI GGATG 3 cut(s) 769, 894, 1004
FriOI GRGCYC 3 cut(s) 564, 765, 1006
FspBI CTAG 2 cut(s) 815, 1037
GlaI GCGC 5 cut(s) 111, 450, 452, 582, 1035
GsaI CCCAGC 1 cut(s) 135
GsuI CTGGAG 1 cut(s) 749
HaeII RGCGCY 1 cut(s) 113
HaeIII GGCC 8 cut(s) 545, 562, 635, 666, 725, 867, 979, 1004
HgaI GACGC 3 cut(s) 212, 680, 682
HhaI GCGC 5 cut(s) 112, 451, 453, 583, 1036
Hin1I GRCGYC 1 cut(s) 693
Hin1II CATG 4 cut(s) 98, 264, 483, 700
Hin6I GCGC 5 cut(s) 110, 449, 451, 581, 1034
HinP1I GCGC 5 cut(s) 110, 449, 451, 581, 1034
HincII GTYRAC 1 cut(s) 526
HindII GTYRAC 1 cut(s) 526
HinfI GANTC 7 cut(s) 11, 155, 366, 383, 506, 968, 1040
HphI GGTGA 2 cut(s) 598, 887
Hpy166II GTNNAC 5 cut(s) 184, 370, 499, 526, 844
Hpy188I TCNGA 4 cut(s) 172, 365, 511, 887
Hpy188III TCNNGA 3 cut(s) 8, 766, 899
Hpy8I GTNNAC 5 cut(s) 184, 370, 499, 526, 844
Hpy99I CGWCG 8 cut(s) 176, 206, 293, 527, 530, 628, 674, 752
HpyAV CCTTC 4 cut(s) 150, 257, 385, 667
HpyCH4III ACNGT 2 cut(s) 163, 954
HpyCH4IV ACGT 2 cut(s) 174, 186
HpyCH4V TGCA 2 cut(s) 594, 907
HpyF10VI GCNNNNNNNGC 7 cut(s) 22, 31, 542, 575, 675, 769, 1001
HpyF3I CTNAG 2 cut(s) 80, 1044
HpySE526I ACGT 2 cut(s) 174, 186
Hsp92I GRCGYC 1 cut(s) 693
Hsp92II CATG 4 cut(s) 98, 264, 483, 700
HspAI GCGC 5 cut(s) 110, 449, 451, 581, 1034
KroI GCCGGC 1 cut(s) 725
KroNI GCCGGC 1 cut(s) 727
KspI CCGCGG 1 cut(s) 220
Kzo9I GATC 5 cut(s) 234, 402, 744, 780, 1012
LmnI GCTCC 6 cut(s) 150, 173, 760, 768, 933, 936
Lsp1109I GCAGC 2 cut(s) 122, 218
LweI GCATC 2 cut(s) 916, 982
MaeI CTAG 2 cut(s) 815, 1037
MaeII ACGT 2 cut(s) 174, 186
MaeIII GTNAC 3 cut(s) 463, 875, 1017
MalI GATC 5 cut(s) 236, 404, 746, 782, 1014
MbiI CCGCTC 2 cut(s) 439, 939
MboI GATC 5 cut(s) 234, 402, 744, 780, 1012
MboII GAAGA 6 cut(s) 40, 249, 271, 294, 297, 811
MflI RGATCY 1 cut(s) 780
MhlI GDGCHC 3 cut(s) 564, 765, 1006
MluCI AATT 1 cut(s) 359
MlyI GAGTC 5 cut(s) 149, 375, 377, 500, 962
MmeI TCCRAC 2 cut(s) 195, 534
MroNI GCCGGC 1 cut(s) 725
MseI TTAA 2 cut(s) 56, 653
MspA1I CMGCKG 3 cut(s) 135, 219, 852
MspR9I CCNGG 2 cut(s) 266, 912
Mva1269I GAATGC 1 cut(s) 780
MvnI CGCG 9 cut(s) 219, 293, 449, 451, 492, 569, 581, 669, 1034
MwoI GCNNNNNNNGC 7 cut(s) 22, 31, 542, 575, 675, 769, 1001
NaeI GCCGGC 1 cut(s) 727
NciI CCSGG 2 cut(s) 266, 912
NdeII GATC 5 cut(s) 234, 402, 744, 780, 1012
NgoMIV GCCGGC 1 cut(s) 725
NlaIII CATG 4 cut(s) 98, 264, 483, 700
NlaIV GGNNCC 6 cut(s) 562, 563, 857, 959, 1004, 1005
NmeAIII GCCGAG 1 cut(s) 849
NmuCI GTSAC 2 cut(s) 463, 875
NspV TTCGAA 1 cut(s) 308
PauI GCGCGC 1 cut(s) 449
PcsI WCGNNNNNNNCGW 3 cut(s) 159, 522, 666
PctI GAATGC 1 cut(s) 780
PdiI GCCGGC 1 cut(s) 727
PfeI GAWTC 1 cut(s) 11
PinAI ACCGGT 1 cut(s) 714
PleI GAGTC 5 cut(s) 149, 374, 377, 500, 962
PpsI GAGTC 5 cut(s) 149, 374, 377, 500, 962
Ppu21I YACGTR 1 cut(s) 187
Psp124BI GAGCTC 1 cut(s) 765
PspFI CCCAGC 1 cut(s) 131
PspN4I GGNNCC 6 cut(s) 562, 563, 857, 959, 1004, 1005
PspOMI GGGCCC 2 cut(s) 560, 1002
PsuI RGATCY 1 cut(s) 780
PteI GCGCGC 1 cut(s) 449
PvuII CAGCTG 2 cut(s) 135, 852
RsaI GTAC 2 cut(s) 519, 590
RsaNI GTAC 2 cut(s) 518, 589
Rsr2I CGGWCCG 1 cut(s) 914
RsrII CGGWCCG 1 cut(s) 914
SacI GAGCTC 1 cut(s) 765
SacII CCGCGG 1 cut(s) 220
SalI GTCGAC 1 cut(s) 524
SaqAI TTAA 2 cut(s) 56, 653
Sau3AI GATC 5 cut(s) 234, 402, 744, 780, 1012
ScaI AGTACT 1 cut(s) 590
SchI GAGTC 5 cut(s) 149, 375, 377, 500, 962
ScrFI CCNGG 2 cut(s) 266, 912
SduI GDGCHC 3 cut(s) 564, 765, 1006
SfaNI GCATC 2 cut(s) 916, 982
Sfr303I CCGCGG 1 cut(s) 220
SfuI TTCGAA 1 cut(s) 308
SgrBI CCGCGG 1 cut(s) 220
SgrDI CGTCGACG 1 cut(s) 524
SinI GGWCC 6 cut(s) 181, 244, 571, 844, 914, 958
Sse9I AATT 1 cut(s) 359
SspMI CTAG 2 cut(s) 815, 1037
SstI GAGCTC 1 cut(s) 765
StyD4I CCNGG 2 cut(s) 264, 910
TaaI ACNGT 2 cut(s) 163, 954
TaiI ACGT 2 cut(s) 177, 189
TaqII GACCGA 1 cut(s) 232
TasI AATT 1 cut(s) 359
TatI WGTACW 1 cut(s) 588
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 2 cut(s) 56, 653
Tru9I TTAA 2 cut(s) 56, 653
TseFI GTSAC 2 cut(s) 463, 875
TseI GCWGC 2 cut(s) 135, 206
Tsp45I GTSAC 2 cut(s) 463, 875
TspDTI ATGAA 2 cut(s) 40, 249
TspGWI ACGGA 1 cut(s) 829
VpaK11BI GGWCC 6 cut(s) 181, 244, 571, 844, 914, 958
XapI RAATTY 1 cut(s) 359
XmiI GTMKAC 3 cut(s) 369, 498, 525
XspI CTAG 2 cut(s) 815, 1037
ZrmI AGTACT 1 cut(s) 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.