Rh6BG500000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0010519
Physical Location & Seq
Reverse (-)
69996498 .. 69996998
501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG500000.1

Sequence Viewer

Length: 501 bp
ATGACTACTACTACTATTCACAGTCGCAGCAATAGCAAGCACCAGTTCTACTCCAGAGGCACTGTGCCCTTCTCTTGGGAAAACAAGCCCGGAGTCTCCAAGCACAAACTACCACCACCGCCTAGGGTTTCTTTCCACGGGGACTACCAGCTCCCTCTTCCTCCTCCCTGCACTTTCCAGGCGCCCATTTCTAGAAACTCCTCCATTAAGGGCTTGATCAGCAACAAAGCCGAAACCGAAGACCCTTTTCAAATGGCCATCCTCGAGTGCACCAAGTCGATCCACAATGGTGGTGGCAATGATAGTGGGGATGTTGCTACCAAAGGTAGGAGGAAAACGTCGTTGTCTTTGTCCCCGAAACAGTACGGTGGGTTTGGATCTGGACTGAGAAGTTTGTTCGGGTCCTTATCGTGTAAATGCTCCAGCAGTGTAAGGGATGAAAGTTTGGTTAAGGTCTCTCGGGTTCCATACCAGAGAGATACAGTACTTATTAATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

166

Amino Acids

18.19

Weight (kDa)

9.79

Isoelectric Point (pI)

65.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 181
AciI CCGC 1 cut(s) 119
AclWI GGATC 2 cut(s) 274, 385
AcoI YGGCCR 1 cut(s) 255
AcyI GRCGYC 1 cut(s) 182
AfaI GTAC 2 cut(s) 365, 486
AfiI CCNNNNNNNGG 2 cut(s) 75, 327
AgsI TTSAA 1 cut(s) 251
AjnI CCWGG 1 cut(s) 177
AleI CACNNNNGTG 1 cut(s) 288
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
Alw21I GWGCWC 1 cut(s) 272
Alw26I GTCTC 2 cut(s) 100, 460
Alw44I GTGCAC 1 cut(s) 268
AlwI GGATC 2 cut(s) 274, 385
Ama87I CYCGRG 2 cut(s) 263, 459
AoxI GGCC 1 cut(s) 255
ApaLI GTGCAC 1 cut(s) 268
ApeKI GCWGC 1 cut(s) 27
AseI ATTAAT 1 cut(s) 492
AspA2I CCTAGG 1 cut(s) 122
AspLEI GCGC 1 cut(s) 184
AspS9I GGNCC 1 cut(s) 402
AsuC2I CCSGG 1 cut(s) 90
AvaI CYCGRG 2 cut(s) 263, 459
AvaII GGWCC 1 cut(s) 402
AvrII CCTAGG 1 cut(s) 122
BaeGI GKGCMC 2 cut(s) 69, 272
BalI TGGCCA 1 cut(s) 257
BanI GGYRCC 1 cut(s) 181
BbsI GAAGAC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 272
BbvI GCAGC 1 cut(s) 39
BccI CCATC 1 cut(s) 266
BciT130I CCWGG 1 cut(s) 179
BclI TGATCA 1 cut(s) 216
BcnI CCSGG 1 cut(s) 90
BcoDI GTCTC 2 cut(s) 100, 460
BfaI CTAG 2 cut(s) 123, 192
BfoI RGCGCY 1 cut(s) 185
BisI GCNGC 1 cut(s) 28
BlnI CCTAGG 1 cut(s) 122
BlsI GCNGC 1 cut(s) 29
BmcAI AGTACT 1 cut(s) 486
Bme1390I CCNGG 2 cut(s) 90, 179
Bme18I GGWCC 1 cut(s) 402
BmeT110I CYCGRG 2 cut(s) 263, 459
BmgT120I GGNCC 1 cut(s) 402
BmiI GGNNCC 3 cut(s) 183, 403, 465
BmrFI CCNGG 2 cut(s) 90, 179
BpiI GAAGAC 1 cut(s) 246
BpmI CTGGAG 2 cut(s) 37, 406
BpuMI CCSGG 1 cut(s) 90
BsaHI GRCGYC 1 cut(s) 182
BsaI GGTCTC 1 cut(s) 460
BsaJI CCNNGG 2 cut(s) 122, 136
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 327
Bse1I ACTGG 1 cut(s) 43
Bse3DI GCAATG 1 cut(s) 304
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 2 cut(s) 122, 136
BseGI GGATG 3 cut(s) 258, 316, 442
BseLI CCNNNNNNNGG 2 cut(s) 75, 327
BseMI GCAATG 1 cut(s) 304
BseMII CTCAG 1 cut(s) 377
BseNI ACTGG 1 cut(s) 43
BseRI GAGGAG 2 cut(s) 153, 190
BseSI GKGCMC 2 cut(s) 69, 272
BseXI GCAGC 1 cut(s) 39
BsgI GTGCAG 1 cut(s) 154
BshFI GGCC 1 cut(s) 257
BshNI GGYRCC 1 cut(s) 181
BsiHKAI GWGCWC 1 cut(s) 272
BsiHKCI CYCGRG 2 cut(s) 263, 459
BsiSI CCGG 1 cut(s) 90
BslFI GGGAC 2 cut(s) 155, 337
BslI CCNNNNNNNGG 2 cut(s) 75, 327
BsmAI GTCTC 2 cut(s) 100, 460
BsmFI GGGAC 2 cut(s) 155, 337
BsnI GGCC 1 cut(s) 257
Bso31I GGTCTC 1 cut(s) 460
BsoBI CYCGRG 2 cut(s) 263, 459
Bsp1286I GDGCHC 2 cut(s) 69, 272
Bsp143I GATC 3 cut(s) 216, 279, 377
BspACI CCGC 1 cut(s) 119
BspANI GGCC 1 cut(s) 257
BspCNI CTCAG 1 cut(s) 378
BspLI GGNNCC 3 cut(s) 183, 403, 465
BspPI GGATC 2 cut(s) 274, 385
BspT107I GGYRCC 1 cut(s) 181
BspTNI GGTCTC 1 cut(s) 460
BsrDI GCAATG 1 cut(s) 304
BsrI ACTGG 1 cut(s) 43
BssECI CCNNGG 2 cut(s) 122, 136
BssMI GATC 3 cut(s) 216, 279, 377
BssNI GRCGYC 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 122
Bst2UI CCWGG 1 cut(s) 179
Bst4CI ACNGT 5 cut(s) 23, 64, 363, 368, 484
Bst6I CTCTTC 1 cut(s) 162
BstACI GRCGYC 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 38
BstDEI CTNAG 1 cut(s) 386
BstDSI CCRYGG 1 cut(s) 136
BstF5I GGATG 3 cut(s) 258, 316, 442
BstH2I RGCGCY 1 cut(s) 185
BstHHI GCGC 1 cut(s) 184
BstKTI GATC 3 cut(s) 219, 282, 380
BstMAI GTCTC 2 cut(s) 100, 460
BstMBI GATC 3 cut(s) 216, 279, 377
BstMWI GCNNNNNNNGC 2 cut(s) 33, 219
BstNI CCWGG 1 cut(s) 179
BstSCI CCNGG 2 cut(s) 88, 177
BstSLI GKGCMC 2 cut(s) 69, 272
BstV1I GCAGC 1 cut(s) 39
BstV2I GAAGAC 1 cut(s) 246
BstX2I RGATCY 1 cut(s) 377
BstXI CCANNNNNNTGG 1 cut(s) 290
BstYI RGATCY 1 cut(s) 377
BsuRI GGCC 1 cut(s) 257
BtgI CCRYGG 1 cut(s) 136
BtsCI GGATG 3 cut(s) 258, 316, 442
BtsI GCAGTG 1 cut(s) 433
BtsIMutI CAGTG 2 cut(s) 60, 433
Cac8I GCNNGC 1 cut(s) 38
CfoI GCGC 1 cut(s) 184
Cfr13I GGNCC 1 cut(s) 402
Csp6I GTAC 2 cut(s) 364, 485
CspCI CAANNNNNGTGG 4 cut(s) 274, 286, 309, 321
CviJI RGCY 5 cut(s) 88, 151, 213, 230, 257
CviKI_1 RGCY 5 cut(s) 88, 151, 213, 230, 257
CviQI GTAC 2 cut(s) 364, 485
DdeI CTNAG 1 cut(s) 386
DinI GGCGCC 1 cut(s) 183
DpnI GATC 3 cut(s) 218, 281, 379
DpnII GATC 3 cut(s) 216, 279, 377
EaeI YGGCCR 1 cut(s) 255
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Eco130I CCWWGG 1 cut(s) 122
Eco31I GGTCTC 1 cut(s) 460
Eco47I GGWCC 1 cut(s) 402
Eco88I CYCGRG 2 cut(s) 263, 459
EcoO109I RGGNCCY 1 cut(s) 402
EcoRII CCWGG 1 cut(s) 177
EcoT14I CCWWGG 1 cut(s) 122
EgeI GGCGCC 1 cut(s) 183
EheI GGCGCC 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 122
FaiI YATR 1 cut(s) 469
FaqI GGGAC 2 cut(s) 155, 337
FbaI TGATCA 1 cut(s) 216
Fnu4HI GCNGC 1 cut(s) 28
FokI GGATG 3 cut(s) 245, 323, 449
Fsp4HI GCNGC 1 cut(s) 28
FspBI CTAG 2 cut(s) 123, 192
GlaI GCGC 1 cut(s) 183
GluI GCNGC 1 cut(s) 28
GsuI CTGGAG 2 cut(s) 37, 406
HaeII RGCGCY 1 cut(s) 185
HaeIII GGCC 1 cut(s) 257
HapII CCGG 1 cut(s) 90
HhaI GCGC 1 cut(s) 184
Hin1I GRCGYC 1 cut(s) 182
Hin6I GCGC 1 cut(s) 182
HinP1I GCGC 1 cut(s) 182
HinfI GANTC 1 cut(s) 93
HpaII CCGG 1 cut(s) 90
Hpy166II GTNNAC 1 cut(s) 270
Hpy188III TCNNGA 3 cut(s) 54, 192, 381
Hpy8I GTNNAC 1 cut(s) 270
Hpy99I CGWCG 1 cut(s) 343
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 5 cut(s) 23, 64, 363, 368, 484
HpyCH4IV ACGT 1 cut(s) 338
HpyCH4V TGCA 2 cut(s) 171, 270
HpyF10VI GCNNNNNNNGC 2 cut(s) 33, 219
HpyF3I CTNAG 1 cut(s) 386
HpySE526I ACGT 1 cut(s) 338
Hsp92I GRCGYC 1 cut(s) 182
HspAI GCGC 1 cut(s) 182
KasI GGCGCC 1 cut(s) 181
Ksp22I TGATCA 1 cut(s) 216
Kzo9I GATC 3 cut(s) 216, 279, 377
LmnI GCTCC 2 cut(s) 156, 425
Lsp1109I GCAGC 1 cut(s) 39
MaeI CTAG 2 cut(s) 123, 192
MaeII ACGT 1 cut(s) 338
MalI GATC 3 cut(s) 218, 281, 379
MboI GATC 3 cut(s) 216, 279, 377
MboII GAAGA 2 cut(s) 149, 251
MflI RGATCY 1 cut(s) 377
MhlI GDGCHC 2 cut(s) 69, 272
MlsI TGGCCA 1 cut(s) 257
MluCI AATT 1 cut(s) 493
MluNI TGGCCA 1 cut(s) 257
Mly113I GGCGCC 1 cut(s) 182
MlyI GAGTC 1 cut(s) 102
MnlI CCTC 7 cut(s) 50, 165, 171, 174, 211, 272, 324
Mox20I TGGCCA 1 cut(s) 257
MscI TGGCCA 1 cut(s) 257
MseI TTAA 4 cut(s) 207, 450, 492, 499
MslI CAYNNNNRTG 1 cut(s) 288
Msp20I TGGCCA 1 cut(s) 257
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 2 cut(s) 90, 179
MvaI CCWGG 1 cut(s) 179
MwoI GCNNNNNNNGC 2 cut(s) 33, 219
NarI GGCGCC 1 cut(s) 182
NciI CCSGG 1 cut(s) 90
NdeII GATC 3 cut(s) 216, 279, 377
NlaIV GGNNCC 3 cut(s) 183, 403, 465
OliI CACNNNNGTG 1 cut(s) 288
PaeR7I CTCGAG 1 cut(s) 263
PkrI GCNGC 1 cut(s) 29
PleI GAGTC 1 cut(s) 101
PluTI GGCGCC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 101
PpuMI RGGWCCY 1 cut(s) 402
PshBI ATTAAT 1 cut(s) 492
Psp5II RGGWCCY 1 cut(s) 402
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
PspN4I GGNNCC 3 cut(s) 183, 403, 465
PspPI GGNCC 1 cut(s) 402
PspPPI RGGWCCY 1 cut(s) 402
PspXI VCTCGAGB 1 cut(s) 263
PsuI RGATCY 1 cut(s) 377
RsaI GTAC 2 cut(s) 365, 486
RsaNI GTAC 2 cut(s) 364, 485
RseI CAYNNNNRTG 1 cut(s) 288
SaqAI TTAA 4 cut(s) 207, 450, 492, 499
SatI GCNGC 1 cut(s) 28
Sau3AI GATC 3 cut(s) 216, 279, 377
Sau96I GGNCC 1 cut(s) 402
ScaI AGTACT 1 cut(s) 486
SchI GAGTC 1 cut(s) 102
ScrFI CCNGG 2 cut(s) 90, 179
SduI GDGCHC 2 cut(s) 69, 272
SetI ASST 4 cut(s) 153, 328, 341, 456
SfoI GGCGCC 1 cut(s) 183
Sfr274I CTCGAG 1 cut(s) 263
SinI GGWCC 1 cut(s) 402
SlaI CTCGAG 1 cut(s) 263
SmiMI CAYNNNNRTG 1 cut(s) 288
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 1 cut(s) 493
SsiI CCGC 1 cut(s) 119
SspDI GGCGCC 1 cut(s) 181
SspMI CTAG 2 cut(s) 123, 192
StyD4I CCNGG 2 cut(s) 88, 177
StyI CCWWGG 1 cut(s) 122
TaaI ACNGT 5 cut(s) 23, 64, 363, 368, 484
TaiI ACGT 1 cut(s) 341
TaqI TCGA 2 cut(s) 264, 278
TasI AATT 1 cut(s) 493
TatI WGTACW 1 cut(s) 484
Tru1I TTAA 4 cut(s) 207, 450, 492, 499
Tru9I TTAA 4 cut(s) 207, 450, 492, 499
TscAI CASTG 2 cut(s) 67, 433
TseI GCWGC 1 cut(s) 27
TspDTI ATGAA 1 cut(s) 453
TspRI CASTG 2 cut(s) 67, 433
VneI GTGCAC 1 cut(s) 268
VpaK11BI GGWCC 1 cut(s) 402
VspI ATTAAT 1 cut(s) 492
XbaI TCTAGA 1 cut(s) 191
XcmI CCANNNNNNNNNTGG 1 cut(s) 290
XhoI CTCGAG 1 cut(s) 263
XmaJI CCTAGG 1 cut(s) 122
XspI CTAG 2 cut(s) 123, 192
ZrmI AGTACT 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.