Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0012937

Physical Location & Seq

Genomic Coordinates Forward (+)

10660625 .. 10663611

Gene Structure 2987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g18320.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1914 bp

ATGCGAAGGTTGTTTCAGAAATCGATTTCTCTCTACACTAAACCCAATTTAATTTCGTCTAATCCAAACAGCCCCTTACAGCTTTTTCACACAGTTCACAAACCCAGCAAGCAAACCAACCATGTGTTCAACGAAAGAAGATCCGGGTTCGGGTTGGTTCGTCTCGGAACCGACCCGGAACCAAGCCCGGACAACCCGACCCACTGCGAGTTCGCCGCCGACGTGGAGAAGATTTACCGAATATTGCGCAAATTCCACTCCCGGGTCCCCAAATTGGAGCTCGCGCTGCACCAATCCGGCGTCGTTTTGCGCTCCGGGTTAACCGAGCGGGTCCTGAACCGGTGCGGCGACGCCGGGAACTTGGGGTACCGGTTCTTCGCCTGGGCCTCGCAGCAGCCCAATTACAGACCCAGCCACGATGTTTACAGAGCGATGATCAAGTCCCTGAGCAAAATGCGGCAGTTCGGCGCCGTGTGGGCTCTGCTTGAGGAGATGAGGAAGGAGAGCCCAGAGCTCATTACTGTGGAGATGTTTGTTGTCTTGATGCGGCGTTTCGCTTCGGCGAGGATGGTGAAGAAGGCAGTAGAGGTGCTTGATGAAATGCCCAAGTATGGGGTTGAGGTGGATGAGTATGCTTTTGGTTGCTTATTGGATGCTTTGTGTAAAAATGGGAGTGTGAAGGAAGCTGCGAGTTTGTTTGAGGATATGAGAGTTAGGTTCAAGCCGAGTATTCGGCATTTTACTTCGTTGTTGTATGGGTGGTGTAGAGCAGGGAAGCTCATGGAGGCGAAACATGTGCTGGTACAGATGAAAGAGTTAGGGATTGAGATTGATATTGTGGTGTATAATGTTTTGGTTGGCGGGTATGCGCAGGCTGGGAAGATGGCGGATGCATATGAGCTGCTAAAGGAGATGAGGAGGAAGGGGTGTGAGCCGAATGCAGCGTCGTATACGACTGTGATTCAGGCGCTTTGTGGGCAGGAGAAAATGGAGGAGGCGATGAGGGTGTTTGTGGAGATGGAGAGGAGTGGGTGTGAGGCTGATGTTGTGACTTATAGTAGTTTGATTAGTGGGTTTTGTAAGTGGGGGAAGATTGTGAGGAGTTATGAGATTTTGGAGAGTATGATACAGAAAGGGTTTATGCCGAGTCAGATGATTTATTTGCAGATTATGTTGGCTCATGAGAAGAAGGAAGACTTGGAGGAGTGTATGGCATTGATGGGGGAGATGAGGAAGATTGGTTGCATGCCTGATCTTTGTATTTACAACACGGTGATTCGGTTGGCTTGCAAGTTGGGGGAAGTGAAGGAAGGTGTTCGGCTTTGGAATGAAATGGAAGAAGCAGCGTTTTCTCCGGGGCTTGACACCTTTGTCATTATGATTCATGGGTTTCTTGCGCAAGGTTGTTTGATCGAAGCTTGTGATTATTTCAAAGAAATGGTTGGCAGAGGCCTTCTGTCTGGGCCGCAATATGGTACCTTGAAGGAGTTGATGAATGCTTTGTTAAGAGATGAGAAGTTAGAAATGGCTAAAGATGTTTGGAGTTGCATTGTGACCAGAGGTTGTGAGCTTAATGTGTGTGCATGGACAATTTGGATTCATGCATTGTTTTCAAAGGGGCATGTGAAGGAGGCTTGTTCATACTGCTTGGACATGATGGAGGCAGATGTGATGCCACAGCCGGATACTTTTGCGAGGCTCATGCGTGGTTTAAAGAAACTCTATAACAGACAGATTGCTGCTGAGATCACTGAGAAGGTGAGGCAGATGGCTGCAGATAGAAAGATCACTTTCAAGATGTATAAAAGACGTGGGGAGAGGGACTTGAACGAAAAAGTTAAGGAGAAGCAGGATGGTGGGAGGAAACGGAGGGCTCGAAGAAGGCAATGGCCTAGTCAAGCTAAAGCCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

638

Amino Acids

73.01

Weight (kDa)

9.03

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	180 - 222	7.8e-08	PPR repeat family
PPR_1	PF12854	205 - 237	3.4e-07	PPR repeat
PPR_1	PF12854	240 - 271	7.4e-06	PPR repeat
PPR_2	PF13041	242 - 285	6.7e-06	PPR repeat family
TPR_24	PF23276	263 - 346	4.7e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	266 - 324	7.3e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	274 - 306	5.2e-08	PPR repeat
PPR_2	PF13041	278 - 325	1e-16	PPR repeat family
PPR	PF01535	280 - 310	2.4e-08	PPR repeat
PPR_long	PF17177	295 - 383	2.7e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	308 - 341	7.8e-09	PPR repeat
PPR_2	PF13041	315 - 361	7.4e-17	PPR repeat family
PPR	PF01535	316 - 345	9.5e-07	PPR repeat
TPR_24	PF23276	333 - 444	9.5e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	335 - 391	3e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	344 - 375	2.4e-09	PPR repeat
PPR	PF01535	350 - 380	1.1e-06	PPR repeat
PPR_1	PF12854	414 - 446	8.3e-08	PPR repeat
PPR_2	PF13041	417 - 464	4.6e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0012937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65820
fragaria_vesca	FvH4_1g18320
prunus_persica	Prupe.6G215900_v2.0.a1
pyrus_communis	pycom02g15460
rosa_chinensis	RchiOBHm_Chr2g0108971
rosa_laevigata	RLG00000017699
rosa_multiflora	Rmu_co8481135.1_g000001 Rmu_sc0014080.1_g000003
rosa_roxburghii	Rroxscaffold_2G00134670
rosa_rugosa	Rorug02G0156700
rosa_samantha	Rh2AG150300 Rh2AG207400 Rh2BG155900 Rh2BG218600 Rh2CG210600 Rh2DG156000 Rh2DG213600
rosa_wichuraiana	Rw0G010990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1370
Acc16I	TGCGCA	3 cut(s)	248, 870, 1398
Acc65I	GGTACC	2 cut(s)	366, 1475
AccB1I	GGYRCC	3 cut(s)	366, 467, 1475
AccBSI	CCGCTC	1 cut(s)	328
AccI	GTMKAC	1 cut(s)	950
AccII	CGCG	1 cut(s)	284
AciI	CCGC	8 cut(s)	216, 328, 345, 457, 547, 861, 887, 1466
AclWI	GGATC	1 cut(s)	135
AcsI	RAATTY	1 cut(s)	251
AcyI	GRCGYC	3 cut(s)	300, 351, 468
AfaI	GTAC	3 cut(s)	368, 804, 1477
AfiI	CCNNNNNNNGG	6 cut(s)	150, 262, 274, 611, 612, 1472
AflIII	ACRYGT	1 cut(s)	793
AgeI	ACCGGT	2 cut(s)	339, 369
AgsI	TTSAA	7 cut(s)	130, 721, 1432, 1483, 1614, 1795, 1828
AjiI	CACGTC	2 cut(s)	223, 1811
AjnI	CCWGG	1 cut(s)	380
AjuI	GAANNNNNNNTTGG	4 cut(s)	110, 142, 1181, 1213
AluBI	AGCT	9 cut(s)	82, 280, 514, 686, 778, 901, 1418, 1570, 1901
AluI	AGCT	9 cut(s)	82, 280, 514, 686, 778, 901, 1418, 1570, 1901
Alw21I	GWGCWC	2 cut(s)	282, 516
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	1 cut(s)	135
Ama87I	CYCGRG	1 cut(s)	261
AoxI	GGCC	4 cut(s)	384, 1450, 1463, 1889
ApeKI	GCWGC	9 cut(s)	286, 391, 394, 686, 901, 941, 1343, 1739, 1772
ApoI	RAATTY	1 cut(s)	251
ArsI	GACNNNNNNTTYG	2 cut(s)	929, 961
AsiGI	ACCGGT	2 cut(s)	339, 369
Asp700I	GAANNNNTTC	1 cut(s)	1314
Asp718I	GGTACC	2 cut(s)	366, 1475
AspLEI	GCGC	7 cut(s)	249, 286, 312, 470, 871, 970, 1399
AspS9I	GGNCC	4 cut(s)	265, 331, 384, 1463
AsuC2I	CCSGG	8 cut(s)	145, 176, 188, 262, 263, 316, 355, 1356
AsuHPI	GGTGA	3 cut(s)	583, 1285, 1771
AvaI	CYCGRG	1 cut(s)	261
AvaII	GGWCC	2 cut(s)	265, 331
BanI	GGYRCC	3 cut(s)	366, 467, 1475
BanII	GRGCYC	5 cut(s)	282, 481, 509, 516, 1876
BarI	GAAGNNNNNNTAC	2 cut(s)	359, 391
BbsI	GAAGAC	1 cut(s)	1200
Bbv12I	GWGCWC	2 cut(s)	282, 516
BbvI	GCAGC	9 cut(s)	273, 403, 406, 673, 888, 953, 1355, 1726, 1759
BccI	CCATC	7 cut(s)	562, 877, 1012, 1213, 1651, 1762, 1847
BceAI	ACGGC	1 cut(s)	455
BcgI	CGANNNNNNTGC	4 cut(s)	778, 812, 1684, 1718
BciT130I	CCWGG	1 cut(s)	382
BciVI	GTATCC	1 cut(s)	1678
BclI	TGATCA	1 cut(s)	435
BcnI	CCSGG	8 cut(s)	145, 176, 188, 262, 263, 316, 355, 1356
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	1 cut(s)	1893
BfmI	CTRYAG	1 cut(s)	1773
BfoI	RGCGCY	2 cut(s)	471, 971
BfuI	GTATCC	1 cut(s)	1678
BglI	GCCNNNNNGGC	1 cut(s)	476
Bme1390I	CCNGG	9 cut(s)	145, 176, 188, 262, 263, 316, 355, 382, 1356
Bme18I	GGWCC	2 cut(s)	265, 331
BmeT110I	CYCGRG	1 cut(s)	261
BmgBI	CACGTC	2 cut(s)	223, 1811
BmgT120I	GGNCC	4 cut(s)	265, 331, 384, 1463
BmiI	GGNNCC	8 cut(s)	169, 180, 266, 267, 332, 368, 469, 1477
BmrFI	CCNGG	9 cut(s)	145, 176, 188, 262, 263, 316, 355, 382, 1356
BmsI	GCATC	4 cut(s)	534, 643, 880, 1662
BpiI	GAAGAC	1 cut(s)	1200
Bpu10I	CCTNAGC	1 cut(s)	446
BpuEI	CTTGAG	1 cut(s)	506
BpuMI	CCSGG	8 cut(s)	145, 176, 188, 262, 263, 316, 355, 1356
Bsa29I	ATCGAT	1 cut(s)	23
BsaHI	GRCGYC	3 cut(s)	300, 351, 468
BsaJI	CCNNGG	3 cut(s)	261, 381, 1355
BsaWI	WCCGGW	2 cut(s)	339, 369
BsaXI	ACNNNNNCTCC	2 cut(s)	1018, 1048
Bsc4I	CCNNNNNNNGG	6 cut(s)	150, 262, 274, 611, 612, 1472
Bse118I	RCCGGY	2 cut(s)	339, 369
Bse3DI	GCAATG	1 cut(s)	1892
BseBI	CCWGG	1 cut(s)	382
BseCI	ATCGAT	1 cut(s)	23
BseDI	CCNNGG	3 cut(s)	261, 381, 1355
BseGI	GGATG	5 cut(s)	573, 631, 658, 895, 1858
BseLI	CCNNNNNNNGG	6 cut(s)	150, 262, 274, 611, 612, 1472
BseMI	GCAATG	1 cut(s)	1892
BseMII	CTCAG	3 cut(s)	437, 1734, 1743
BseRI	GAGGAG	6 cut(s)	503, 931, 1007, 1039, 1114, 1217
BseXI	GCAGC	9 cut(s)	273, 403, 406, 673, 888, 953, 1355, 1726, 1759
BseYI	CCCAGC	3 cut(s)	104, 410, 875
BsgI	GTGCAG	1 cut(s)	272
Bsh1236I	CGCG	1 cut(s)	284
BshFI	GGCC	4 cut(s)	386, 1452, 1465, 1891
BshNI	GGYRCC	3 cut(s)	366, 467, 1475
BshTI	ACCGGT	2 cut(s)	339, 369
BshVI	ATCGAT	1 cut(s)	23
BsiHKAI	GWGCWC	2 cut(s)	282, 516
BsiHKCI	CYCGRG	1 cut(s)	261
BslFI	GGGAC	3 cut(s)	251, 427, 1835
BslI	CCNNNNNNNGG	6 cut(s)	150, 262, 274, 611, 612, 1472
BsmAI	GTCTC	1 cut(s)	167
BsmBI	CGTCTC	1 cut(s)	167
BsmFI	GGGAC	3 cut(s)	251, 427, 1835
BsmI	GAATGC	2 cut(s)	943, 1501
BsnI	GGCC	4 cut(s)	386, 1452, 1465, 1891
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	5 cut(s)	282, 481, 509, 516, 1876
Bsp143I	GATC	6 cut(s)	140, 435, 1252, 1410, 1746, 1785
BspACI	CCGC	8 cut(s)	216, 328, 345, 457, 547, 861, 887, 1466
BspANI	GGCC	4 cut(s)	386, 1452, 1465, 1891
BspCNI	CTCAG	3 cut(s)	438, 1735, 1744
BspDI	ATCGAT	1 cut(s)	23
BspFNI	CGCG	1 cut(s)	284
BspHI	TCATGA	1 cut(s)	1180
BspLI	GGNNCC	8 cut(s)	169, 180, 266, 267, 332, 368, 469, 1477
BspMAI	CTGCAG	1 cut(s)	1777
BspPI	GGATC	1 cut(s)	135
BspT107I	GGYRCC	3 cut(s)	366, 467, 1475
BsrBI	CCGCTC	1 cut(s)	328
BsrDI	GCAATG	1 cut(s)	1892
BsrFI	RCCGGY	2 cut(s)	339, 369
BssAI	RCCGGY	2 cut(s)	339, 369
BssECI	CCNNGG	3 cut(s)	261, 381, 1355
BssMI	GATC	6 cut(s)	140, 435, 1252, 1410, 1746, 1785
BssNAI	GTATAC	1 cut(s)	951
BssNI	GRCGYC	3 cut(s)	300, 351, 468
Bst1107I	GTATAC	1 cut(s)	951
Bst2UI	CCWGG	1 cut(s)	382
Bst4CI	ACNGT	4 cut(s)	94, 523, 958, 1273
BstACI	GRCGYC	3 cut(s)	300, 351, 468
BstC8I	GCNNGC	5 cut(s)	110, 282, 873, 1247, 1288
BstDEI	CTNAG	3 cut(s)	446, 1743, 1752
BstF5I	GGATG	5 cut(s)	573, 631, 658, 895, 1858
BstFNI	CGCG	1 cut(s)	284
BstH2I	RGCGCY	2 cut(s)	471, 971
BstHHI	GCGC	7 cut(s)	249, 286, 312, 470, 871, 970, 1399
BstKTI	GATC	6 cut(s)	143, 438, 1255, 1413, 1749, 1788
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	6 cut(s)	140, 435, 1252, 1410, 1746, 1785
BstMWI	GCNNNNNNNGC	3 cut(s)	286, 476, 976
BstNI	CCWGG	1 cut(s)	382
BstNSI	RCATGY	3 cut(s)	797, 1249, 1625
BstSCI	CCNGG	9 cut(s)	143, 174, 186, 260, 261, 314, 353, 380, 1354
BstSFI	CTRYAG	1 cut(s)	1773
BstUI	CGCG	1 cut(s)	284
BstV1I	GCAGC	9 cut(s)	273, 403, 406, 673, 888, 953, 1355, 1726, 1759
BstV2I	GAAGAC	1 cut(s)	1200
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
BstZ17I	GTATAC	1 cut(s)	951
Bsu15I	ATCGAT	1 cut(s)	23
BsuI	GTATCC	1 cut(s)	1678
BsuRI	GGCC	4 cut(s)	386, 1452, 1465, 1891
BsuTUI	ATCGAT	1 cut(s)	23
BtgZI	GCGATG	2 cut(s)	446, 1013
BtrI	CACGTC	2 cut(s)	223, 1811
BtsCI	GGATG	5 cut(s)	573, 631, 658, 895, 1858
BtsI	GCAGTG	1 cut(s)	202
BtsIMutI	CAGTG	2 cut(s)	202, 1749
Cac8I	GCNNGC	5 cut(s)	110, 282, 873, 1247, 1288
CciI	TCATGA	1 cut(s)	1180
CfoI	GCGC	7 cut(s)	249, 286, 312, 470, 871, 970, 1399
Cfr10I	RCCGGY	2 cut(s)	339, 369
Cfr13I	GGNCC	4 cut(s)	265, 331, 384, 1463
Cfr9I	CCCGGG	1 cut(s)	261
ClaI	ATCGAT	1 cut(s)	23
CseI	GACGC	3 cut(s)	289, 359, 933
Csp6I	GTAC	3 cut(s)	367, 803, 1476
CspAI	ACCGGT	2 cut(s)	339, 369
CviQI	GTAC	3 cut(s)	367, 803, 1476
DdeI	CTNAG	3 cut(s)	446, 1743, 1752
DinI	GGCGCC	1 cut(s)	469
DpnI	GATC	6 cut(s)	142, 437, 1254, 1412, 1748, 1787
DpnII	GATC	6 cut(s)	140, 435, 1252, 1410, 1746, 1785
DraI	TTTAAA	1 cut(s)	1713
DrdI	GACNNNNNNGTC	1 cut(s)	1370
DseDI	GACNNNNNNGTC	1 cut(s)	1370
EciI	GGCGGA	1 cut(s)	902
Ecl136II	GAGCTC	2 cut(s)	280, 514
Eco147I	AGGCCT	1 cut(s)	1452
Eco24I	GRGCYC	5 cut(s)	282, 481, 509, 516, 1876
Eco47I	GGWCC	2 cut(s)	265, 331
Eco53kI	GAGCTC	2 cut(s)	280, 514
Eco88I	CYCGRG	1 cut(s)	261
EcoICRI	GAGCTC	2 cut(s)	280, 514
EcoO109I	RGGNCCY	2 cut(s)	265, 331
EcoRII	CCWGG	1 cut(s)	380
EcoT22I	ATGCAT	2 cut(s)	895, 1606
EcoT38I	GRGCYC	5 cut(s)	282, 481, 509, 516, 1876
EgeI	GGCGCC	1 cut(s)	469
EheI	GGCGCC	1 cut(s)	469
Esp3I	CGTCTC	1 cut(s)	167
FalI	AAGNNNNNCTT	2 cut(s)	1181, 1213
FaqI	GGGAC	3 cut(s)	251, 427, 1835
FauI	CCCGC	2 cut(s)	321, 854
FauNDI	CATATG	1 cut(s)	895
FbaI	TGATCA	1 cut(s)	435
FblI	GTMKAC	1 cut(s)	950
FokI	GGATG	5 cut(s)	580, 638, 665, 902, 1865
FriOI	GRGCYC	5 cut(s)	282, 481, 509, 516, 1876
FspBI	CTAG	1 cut(s)	1893
FspI	TGCGCA	3 cut(s)	248, 870, 1398
GlaI	GCGC	7 cut(s)	248, 285, 311, 469, 870, 969, 1398
GsaI	CCCAGC	3 cut(s)	108, 414, 879
HaeII	RGCGCY	2 cut(s)	471, 971
HaeIII	GGCC	4 cut(s)	386, 1452, 1465, 1891
HgaI	GACGC	3 cut(s)	289, 359, 933
HhaI	GCGC	7 cut(s)	249, 286, 312, 470, 871, 970, 1399
Hin1I	GRCGYC	3 cut(s)	300, 351, 468
Hin6I	GCGC	7 cut(s)	247, 284, 310, 468, 869, 968, 1397
HinP1I	GCGC	7 cut(s)	247, 284, 310, 468, 869, 968, 1397
HincII	GTYRAC	1 cut(s)	321
HindII	GTYRAC	1 cut(s)	321
HindIII	AAGCTT	1 cut(s)	1416
HinfI	GANTC	5 cut(s)	961, 1147, 1276, 1381, 1597
HpaI	GTTAAC	1 cut(s)	321
HphI	GGTGA	3 cut(s)	583, 1285, 1771
Hpy166II	GTNNAC	4 cut(s)	97, 321, 424, 951
Hpy188I	TCNGA	3 cut(s)	18, 167, 1152
Hpy188III	TCNNGA	4 cut(s)	334, 541, 1181, 1795
Hpy8I	GTNNAC	4 cut(s)	97, 321, 424, 951
Hpy99I	CGWCG	4 cut(s)	224, 305, 353, 949
HpyCH4III	ACNGT	4 cut(s)	94, 523, 958, 1273
HpyCH4IV	ACGT	2 cut(s)	222, 1810
HpyF10VI	GCNNNNNNNGC	3 cut(s)	286, 476, 976
HpyF3I	CTNAG	3 cut(s)	446, 1743, 1752
HpySE526I	ACGT	2 cut(s)	222, 1810
Hsp92I	GRCGYC	3 cut(s)	300, 351, 468
HspAI	GCGC	7 cut(s)	247, 284, 310, 468, 869, 968, 1397
KasI	GGCGCC	1 cut(s)	467
KflI	GGGWCCC	1 cut(s)	265
KpnI	GGTACC	2 cut(s)	370, 1479
Ksp22I	TGATCA	1 cut(s)	435
KspAI	GTTAAC	1 cut(s)	321
Kzo9I	GATC	6 cut(s)	140, 435, 1252, 1410, 1746, 1785
LmnI	GCTCC	2 cut(s)	277, 317
Lsp1109I	GCAGC	9 cut(s)	273, 403, 406, 673, 888, 953, 1355, 1726, 1759
LweI	GCATC	4 cut(s)	534, 643, 880, 1662
MaeI	CTAG	1 cut(s)	1893
MaeII	ACGT	2 cut(s)	222, 1810
MaeIII	GTNAC	2 cut(s)	1048, 1552
MalI	GATC	6 cut(s)	142, 437, 1254, 1412, 1748, 1787
MbiI	CCGCTC	1 cut(s)	328
MboI	GATC	6 cut(s)	140, 435, 1252, 1410, 1746, 1785
MflI	RGATCY	1 cut(s)	140
MhlI	GDGCHC	5 cut(s)	282, 481, 509, 516, 1876
MluCI	AATT	6 cut(s)	46, 51, 251, 272, 400, 1590
Mly113I	GGCGCC	1 cut(s)	468
MlyI	GAGTC	1 cut(s)	1156
Mph1103I	ATGCAT	2 cut(s)	895, 1606
MroXI	GAANNNNTTC	1 cut(s)	1314
MseI	TTAA	6 cut(s)	50, 320, 1505, 1572, 1712, 1839
MslI	CAYNNNNRTG	1 cut(s)	521
MspR9I	CCNGG	9 cut(s)	145, 176, 188, 262, 263, 316, 355, 382, 1356
Mva1269I	GAATGC	2 cut(s)	943, 1501
MvaI	CCWGG	1 cut(s)	382
MvnI	CGCG	1 cut(s)	284
MwoI	GCNNNNNNNGC	3 cut(s)	286, 476, 976
NarI	GGCGCC	1 cut(s)	468
NciI	CCSGG	8 cut(s)	145, 176, 188, 262, 263, 316, 355, 1356
NdeI	CATATG	1 cut(s)	895
NdeII	GATC	6 cut(s)	140, 435, 1252, 1410, 1746, 1785
NlaIV	GGNNCC	8 cut(s)	169, 180, 266, 267, 332, 368, 469, 1477
NmeAIII	GCCGAG	2 cut(s)	750, 1170
NmuCI	GTSAC	2 cut(s)	1048, 1552
NsbI	TGCGCA	3 cut(s)	248, 870, 1398
NsiI	ATGCAT	2 cut(s)	895, 1606
NspI	RCATGY	3 cut(s)	797, 1249, 1625
PaeI	GCATGC	1 cut(s)	1249
PagI	TCATGA	1 cut(s)	1180
PceI	AGGCCT	1 cut(s)	1452
PciI	ACATGT	1 cut(s)	793
PcsI	WCGNNNNNNNCGW	2 cut(s)	219, 1873
PctI	GAATGC	2 cut(s)	943, 1501
PdmI	GAANNNNTTC	1 cut(s)	1314
PfeI	GAWTC	4 cut(s)	961, 1276, 1381, 1597
PinAI	ACCGGT	2 cut(s)	339, 369
PleI	GAGTC	1 cut(s)	1155
PluTI	GGCGCC	1 cut(s)	471
PpsI	GAGTC	1 cut(s)	1155
PpuMI	RGGWCCY	2 cut(s)	265, 331
PscI	ACATGT	1 cut(s)	793
Psp124BI	GAGCTC	2 cut(s)	282, 516
Psp5II	RGGWCCY	2 cut(s)	265, 331
Psp6I	CCWGG	1 cut(s)	380
PspFI	CCCAGC	3 cut(s)	104, 410, 875
PspGI	CCWGG	1 cut(s)	380
PspN4I	GGNNCC	8 cut(s)	169, 180, 266, 267, 332, 368, 469, 1477
PspPI	GGNCC	4 cut(s)	265, 331, 384, 1463
PspPPI	RGGWCCY	2 cut(s)	265, 331
PsrI	GAACNNNNNNTAC	2 cut(s)	350, 382
PstI	CTGCAG	1 cut(s)	1777
PsuI	RGATCY	1 cut(s)	140
RsaI	GTAC	3 cut(s)	368, 804, 1477
RsaNI	GTAC	3 cut(s)	367, 803, 1476
RseI	CAYNNNNRTG	1 cut(s)	521
SacI	GAGCTC	2 cut(s)	282, 516
SaqAI	TTAA	6 cut(s)	50, 320, 1505, 1572, 1712, 1839
Sau3AI	GATC	6 cut(s)	140, 435, 1252, 1410, 1746, 1785
Sau96I	GGNCC	4 cut(s)	265, 331, 384, 1463
SchI	GAGTC	1 cut(s)	1156
ScrFI	CCNGG	9 cut(s)	145, 176, 188, 262, 263, 316, 355, 382, 1356
SduI	GDGCHC	5 cut(s)	282, 481, 509, 516, 1876
SfaNI	GCATC	4 cut(s)	534, 643, 880, 1662
SfcI	CTRYAG	1 cut(s)	1773
SfoI	GGCGCC	1 cut(s)	469
SinI	GGWCC	2 cut(s)	265, 331
SmaI	CCCGGG	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	521
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
SphI	GCATGC	1 cut(s)	1249
Sse9I	AATT	6 cut(s)	46, 51, 251, 272, 400, 1590
SseBI	AGGCCT	1 cut(s)	1452
SsiI	CCGC	8 cut(s)	216, 328, 345, 457, 547, 861, 887, 1466
SspDI	GGCGCC	1 cut(s)	467
SspI	AATATT	1 cut(s)	243
SspMI	CTAG	1 cut(s)	1893
SstI	GAGCTC	2 cut(s)	282, 516
StuI	AGGCCT	1 cut(s)	1452
StyD4I	CCNGG	9 cut(s)	143, 174, 186, 260, 261, 314, 353, 380, 1354
TaaI	ACNGT	4 cut(s)	94, 523, 958, 1273
TaiI	ACGT	2 cut(s)	225, 1813
TaqI	TCGA	3 cut(s)	23, 1413, 1876
TasI	AATT	6 cut(s)	46, 51, 251, 272, 400, 1590
TauI	GCSGC	5 cut(s)	218, 348, 460, 550, 1468
TfiI	GAWTC	4 cut(s)	961, 1276, 1381, 1597
Tru1I	TTAA	6 cut(s)	50, 320, 1505, 1572, 1712, 1839
Tru9I	TTAA	6 cut(s)	50, 320, 1505, 1572, 1712, 1839
TscAI	CASTG	2 cut(s)	209, 1756
TseFI	GTSAC	2 cut(s)	1048, 1552
TseI	GCWGC	9 cut(s)	286, 391, 394, 686, 901, 941, 1343, 1739, 1772
Tsp45I	GTSAC	2 cut(s)	1048, 1552
TspDTI	ATGAA	7 cut(s)	612, 824, 1344, 1373, 1508, 1589, 1629
TspGWI	ACGGA	1 cut(s)	1882
TspMI	CCCGGG	1 cut(s)	261
TspRI	CASTG	2 cut(s)	209, 1756
VpaK11BI	GGWCC	2 cut(s)	265, 331
XapI	RAATTY	1 cut(s)	251
XceI	RCATGY	3 cut(s)	797, 1249, 1625
XmaI	CCCGGG	1 cut(s)	261
XmiI	GTMKAC	1 cut(s)	950
XmnI	GAANNNNTTC	1 cut(s)	1314
XspI	CTAG	1 cut(s)	1893
Zsp2I	ATGCAT	2 cut(s)	895, 1606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.