Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0012937

Physical Location & Seq

Genomic Coordinates Forward (+)

20626928 .. 20628850

Gene Structure 1923 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG210600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1923 bp

ATGCGAAGGTTGTATCAGAAATCGATCTTTCTCTACACCAAACCCAATCTCTCAATTTCAATTTCGTCCAATCCAAACAGCCCCTTACACCTCTTTCACACAGTTCACAAACCCACCAAACAAACCAACCATGTATCCACCGAACGAAGATCAGGTCTCGGGTTGGTCCGTCTCGAAACCGACCCGGAACCAAACCCAGACGACCCGACCCACTGCGAGTTCGCCGCCGACGTGGAGAAGATATACAGAATATTGCGCAAATTCCACTCCCGGGTCCCCAAATTAGAGCTCGCTCTACATCAATCCGGCGTCGTTTTGCGCTCCGGCTTAACCGAGCGAGTGCTGAACCGGTGCGGCGACGCCGGGAATTTAGGGTACAGGTTCTTCGTCTGGGCCTCGCAGCAGCCCAATTACAGACCCAGCTACGATGTGTACAAAGCCATGATCAAGTCCCTAAGCAAAATGCGGCAATTCGGCGCCGTTTGGGCTCTGCTTGAGGAGATGAGGAGAGAAAATCAGGAGCTAATTACTGTGGAAATGTTTGTGGTTTTGATGCGGCGTTTCGCTTCGGCGAGGATGGTGAAGAAAGCAGTGGAGGTGCTCGATGAAATGCCCAAGTACGGGTGCGAGGCGGATGAGTATGCTTTTGGGTGCTTGCTTGATGCTCTGTGTAAAAATGGGAGTGTGAAAGAAGCGGCGAGTTTGTTTGAGGATATGAGAGTTAGGTTCAAGCCTAGTATTAGGCATTTTACTTCTTTGTTGTATGGGTGGTGTAGAGCAGGGAAGCTTATGGAGGCGAAACATGTGTTGGTGCAGATGAGGGAGGGAGGGTTCGAGCCGGATATTGTGGTGTATAACAATTTGCTTGGTGGGTATGCTCAGGCTGGGAAGATGGCTGATGCGTATGAGCTGTTGAAGGAGATGAGGAGGAAGGGTTGTGAGCCCAATGCGGCTTCTTATACGACTGTGATCCAGGCGCTTTGCGGGCAGGAGAAGATGGAGGAGGCGATGAGGGTGTTTGTGGAGATGGAGAGGAGTGGTTGTGAGGCTGATGTTGTTACTTATACTACTTTGATTGGTGGGTTTTGTAAGTGGGGGAAGATTGTGAGGAGTTATGAGATTTTGGAGAGTATGGTACAGAGAGGGTTTACGCCCAGTCAGATGACTTACTTGCAGATTATGTTGGCTCATGAGAAGAAGGAAGACTTGGAGGAGTGTGTGGAATTAATGGGGGAGATGAGGAAGATTGGTTGCATGCCTGATCTTGGTATTTACAACACGGTGATTCGGTTGGCTTGCAAATTGGGGGAGGTGAAAGAAGGCGTTCGGCTTTGGAATGAAATGGAAGAAGCTGGGTTTTCTCCGGGGCTTGACACCTTTGTCATTATGATTCATGGGTTTCTCGGGCAAGGTTGTTTGATCGAAGCTTGTGATTACTTCAAAGAAATGGTTGGCAGAGGCCTTCTATCTGGGCCACAATATGGTACCTTGAAGGAGTTAATGAATGCTTTGTTGAGAGATGAGAAGCTAGAAATGGCTAAAGATGTTTGGAGTTGCATTGTGACCAAAGGGTGTGAGCTTAATGTGTATGCATGGACAATTTGGATTCATGCACTGTTTTCAAAGGGGCATGTGAAAGAGGCTTGCTCATACTGCTTGGACATGATGGAGGCAGATGTAATGCCACAGCCGGATACTTTTGCGAAGCTCATGCGTGGTTTAAAGAAACTTTATAACAGACAGATTGCTGCTGAGATCACAGAGAAGGTGAGGCAGATGGCTGCAGATAGAAAGATCACTTTCAAGATGTATAAAAGACGCGGAGAGAGGGACTTGAACGAAAAAGTTAAGGAGAAGAAGGACGGGGGAAGGAAACGGAGGGCTCGAAAACGGCAATGGCCTAGTAAAGCTAAAGCCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

640

Amino Acids

73.39

Weight (kDa)

8.99

Isoelectric Point (pI)

37.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	183 - 225	4e-08	PPR repeat family
PPR_long	PF17177	193 - 310	9e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	208 - 240	6.2e-08	PPR repeat
PPR_3	PF13812	235 - 290	6.1e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	243 - 274	7.9e-06	PPR repeat
PPR_3	PF13812	269 - 327	4e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	277 - 309	2e-08	PPR repeat
PPR_2	PF13041	280 - 328	3.6e-18	PPR repeat family
PPR	PF01535	283 - 313	3.2e-08	PPR repeat
PPR_long	PF17177	298 - 391	8.8e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	311 - 344	7.8e-09	PPR repeat
PPR	PF01535	319 - 348	9.5e-07	PPR repeat
PPR_2	PF13041	319 - 364	7.8e-17	PPR repeat family
TPR_24	PF23276	336 - 447	1.4e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	338 - 394	1e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	347 - 379	2e-09	PPR repeat
PPR_2	PF13041	351 - 391	6.8e-09	PPR repeat family
PPR	PF01535	353 - 383	2.3e-06	PPR repeat
PPR_1	PF12854	417 - 449	6.7e-07	PPR repeat
PPR_2	PF13041	424 - 467	6.5e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0012937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65820
fragaria_vesca	FvH4_1g18320
prunus_persica	Prupe.6G215900_v2.0.a1
pyrus_communis	pycom02g15460
rosa_chinensis	RchiOBHm_Chr2g0108971
rosa_laevigata	RLG00000017699
rosa_multiflora	Rmu_co8481135.1_g000001 Rmu_sc0014080.1_g000003
rosa_roxburghii	Rroxscaffold_2G00134670
rosa_rugosa	Rorug02G0156700
rosa_samantha	Rh2AG150300 Rh2AG207400 Rh2BG155900 Rh2BG218600 Rh2CG210600 Rh2DG156000 Rh2DG213600
rosa_wichuraiana	Rw0G010990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1734
AasI	GACNNNNNNGTC	1 cut(s)	1379
Acc16I	TGCGCA	1 cut(s)	257
Acc65I	GGTACC	1 cut(s)	1484
AccB1I	GGYRCC	2 cut(s)	476, 1484
AccB7I	CCANNNNNTGG	1 cut(s)	1481
AccII	CGCG	1 cut(s)	1821
AciI	CCGC	9 cut(s)	225, 354, 466, 556, 632, 695, 950, 984, 1821
AclWI	GGATC	1 cut(s)	964
AcsI	RAATTY	2 cut(s)	260, 367
AcyI	GRCGYC	3 cut(s)	309, 360, 477
AfaI	GTAC	5 cut(s)	377, 434, 620, 1137, 1486
AfiI	CCNNNNNNNGG	5 cut(s)	271, 620, 621, 1265, 1481
AflIII	ACRYGT	1 cut(s)	802
AgeI	ACCGGT	1 cut(s)	348
AgsI	TTSAA	8 cut(s)	60, 730, 916, 1441, 1492, 1623, 1804, 1837
AjiI	CACGTC	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	972
AjuI	GAANNNNNNNTTGG	4 cut(s)	791, 823, 1190, 1222
AloI	GAACNNNNNNTCC	2 cut(s)	815, 847
Alw21I	GWGCWC	2 cut(s)	291, 603
Alw26I	GTCTC	2 cut(s)	161, 176
AlwI	GGATC	1 cut(s)	964
Ama87I	CYCGRG	3 cut(s)	158, 270, 1403
AoxI	GGCC	4 cut(s)	393, 1459, 1472, 1898
ApeKI	GCWGC	4 cut(s)	400, 403, 1748, 1781
ApoI	RAATTY	2 cut(s)	260, 367
ArsI	GACNNNNNNTTYG	2 cut(s)	139, 171
AseI	ATTAAT	1 cut(s)	1226
AsiGI	ACCGGT	1 cut(s)	348
Asp700I	GAANNNNTTC	1 cut(s)	1323
Asp718I	GGTACC	1 cut(s)	1484
AspLEI	GCGC	4 cut(s)	258, 321, 479, 979
AspS9I	GGNCC	4 cut(s)	166, 274, 393, 1472
AsuC2I	CCSGG	5 cut(s)	185, 271, 272, 364, 1365
AsuHPI	GGTGA	4 cut(s)	592, 1294, 1324, 1780
AvaI	CYCGRG	3 cut(s)	158, 270, 1403
AvaII	GGWCC	2 cut(s)	166, 274
BanI	GGYRCC	2 cut(s)	476, 1484
BanII	GRGCYC	4 cut(s)	291, 490, 945, 1885
BarI	GAAGNNNNNNTAC	2 cut(s)	368, 400
BbsI	GAAGAC	1 cut(s)	1209
Bbv12I	GWGCWC	2 cut(s)	291, 603
BbvI	GCAGC	4 cut(s)	412, 415, 1735, 1768
BccI	CCATC	6 cut(s)	571, 886, 991, 1021, 1660, 1771
BceAI	ACGGC	2 cut(s)	464, 1907
BcgI	CGANNNNNNTGC	2 cut(s)	1693, 1727
BciT130I	CCWGG	1 cut(s)	974
BciVI	GTATCC	2 cut(s)	145, 1687
BclI	TGATCA	1 cut(s)	444
BcnI	CCSGG	5 cut(s)	185, 271, 272, 364, 1365
BcoDI	GTCTC	2 cut(s)	161, 176
BfaI	CTAG	3 cut(s)	735, 1529, 1902
BfmI	CTRYAG	1 cut(s)	1782
BfoI	RGCGCY	2 cut(s)	480, 980
BfuI	GTATCC	2 cut(s)	145, 1687
BglI	GCCNNNNNGGC	1 cut(s)	485
Bme1390I	CCNGG	6 cut(s)	185, 271, 272, 364, 974, 1365
Bme18I	GGWCC	2 cut(s)	166, 274
BmeT110I	CYCGRG	3 cut(s)	158, 270, 1403
BmgBI	CACGTC	1 cut(s)	232
BmgT120I	GGNCC	4 cut(s)	166, 274, 393, 1472
BmiI	GGNNCC	5 cut(s)	189, 275, 276, 478, 1486
BmrFI	CCNGG	6 cut(s)	185, 271, 272, 364, 974, 1365
BmrI	ACTGGG	1 cut(s)	1149
BmsI	GCATC	3 cut(s)	543, 652, 889
BmuI	ACTGGG	1 cut(s)	1149
BpiI	GAAGAC	1 cut(s)	1209
BplI	GAGNNNNNCTC	2 cut(s)	1631, 1663
Bpu10I	CCTNAGC	2 cut(s)	455, 879
BpuEI	CTTGAG	1 cut(s)	515
BpuMI	CCSGG	5 cut(s)	185, 271, 272, 364, 1365
Bsa29I	ATCGAT	1 cut(s)	23
BsaHI	GRCGYC	3 cut(s)	309, 360, 477
BsaI	GGTCTC	1 cut(s)	161
BsaJI	CCNNGG	2 cut(s)	270, 1364
BsaWI	WCCGGW	1 cut(s)	348
BsaXI	ACNNNNNCTCC	6 cut(s)	815, 845, 919, 949, 1027, 1057
Bsc4I	CCNNNNNNNGG	5 cut(s)	271, 620, 621, 1265, 1481
Bse118I	RCCGGY	1 cut(s)	348
Bse1I	ACTGG	1 cut(s)	1155
Bse3DI	GCAATG	1 cut(s)	1901
BseBI	CCWGG	1 cut(s)	974
BseCI	ATCGAT	1 cut(s)	23
BseDI	CCNNGG	2 cut(s)	270, 1364
BseGI	GGATG	2 cut(s)	582, 640
BseLI	CCNNNNNNNGG	5 cut(s)	271, 620, 621, 1265, 1481
BseMI	GCAATG	1 cut(s)	1901
BseMII	CTCAG	2 cut(s)	893, 1743
BseNI	ACTGG	1 cut(s)	1155
BseRI	GAGGAG	7 cut(s)	512, 520, 940, 1016, 1048, 1123, 1226
BseXI	GCAGC	4 cut(s)	412, 415, 1735, 1768
BseYI	CCCAGC	3 cut(s)	419, 884, 1352
BsgI	GTGCAG	1 cut(s)	833
Bsh1236I	CGCG	1 cut(s)	1821
BshFI	GGCC	4 cut(s)	395, 1461, 1474, 1900
BshNI	GGYRCC	2 cut(s)	476, 1484
BshTI	ACCGGT	1 cut(s)	348
BshVI	ATCGAT	1 cut(s)	23
BsiHKAI	GWGCWC	2 cut(s)	291, 603
BsiHKCI	CYCGRG	3 cut(s)	158, 270, 1403
BsiSI	CCGG	9 cut(s)	185, 271, 306, 324, 349, 363, 839, 1364, 1691
BslFI	GGGAC	3 cut(s)	260, 436, 1844
BslI	CCNNNNNNNGG	5 cut(s)	271, 620, 621, 1265, 1481
BsmAI	GTCTC	2 cut(s)	161, 176
BsmBI	CGTCTC	1 cut(s)	176
BsmFI	GGGAC	3 cut(s)	260, 436, 1844
BsmI	GAATGC	1 cut(s)	1510
BsnI	GGCC	4 cut(s)	395, 1461, 1474, 1900
Bso31I	GGTCTC	1 cut(s)	161
BsoBI	CYCGRG	3 cut(s)	158, 270, 1403
Bsp1286I	GDGCHC	5 cut(s)	291, 490, 603, 945, 1885
Bsp1407I	TGTACA	1 cut(s)	432
Bsp143I	GATC	8 cut(s)	24, 149, 444, 969, 1261, 1419, 1755, 1794
BspACI	CCGC	9 cut(s)	225, 354, 466, 556, 632, 695, 950, 984, 1821
BspANI	GGCC	4 cut(s)	395, 1461, 1474, 1900
BspCNI	CTCAG	2 cut(s)	892, 1744
BspDI	ATCGAT	1 cut(s)	23
BspFNI	CGCG	1 cut(s)	1821
BspHI	TCATGA	1 cut(s)	1189
BspLI	GGNNCC	5 cut(s)	189, 275, 276, 478, 1486
BspMAI	CTGCAG	1 cut(s)	1786
BspPI	GGATC	1 cut(s)	964
BspT107I	GGYRCC	2 cut(s)	476, 1484
BspTNI	GGTCTC	1 cut(s)	161
BsrDI	GCAATG	1 cut(s)	1901
BsrFI	RCCGGY	1 cut(s)	348
BsrGI	TGTACA	1 cut(s)	432
BsrI	ACTGG	1 cut(s)	1155
BssAI	RCCGGY	1 cut(s)	348
BssECI	CCNNGG	2 cut(s)	270, 1364
BssMI	GATC	8 cut(s)	24, 149, 444, 969, 1261, 1419, 1755, 1794
BssNI	GRCGYC	3 cut(s)	309, 360, 477
Bst2UI	CCWGG	1 cut(s)	974
Bst4CI	ACNGT	5 cut(s)	103, 532, 967, 1282, 1617
BstACI	GRCGYC	3 cut(s)	309, 360, 477
BstAUI	TGTACA	1 cut(s)	432
BstC8I	GCNNGC	6 cut(s)	291, 656, 986, 1256, 1297, 1645
BstDEI	CTNAG	3 cut(s)	455, 879, 1752
BstF5I	GGATG	2 cut(s)	582, 640
BstFNI	CGCG	1 cut(s)	1821
BstH2I	RGCGCY	2 cut(s)	480, 980
BstHHI	GCGC	4 cut(s)	258, 321, 479, 979
BstKTI	GATC	8 cut(s)	27, 152, 447, 972, 1264, 1422, 1758, 1797
BstMAI	GTCTC	2 cut(s)	161, 176
BstMBI	GATC	8 cut(s)	24, 149, 444, 969, 1261, 1419, 1755, 1794
BstMWI	GCNNNNNNNGC	3 cut(s)	485, 985, 1653
BstNI	CCWGG	1 cut(s)	974
BstNSI	RCATGY	3 cut(s)	806, 1258, 1634
BstSCI	CCNGG	6 cut(s)	183, 269, 270, 362, 972, 1363
BstSFI	CTRYAG	1 cut(s)	1782
BstUI	CGCG	1 cut(s)	1821
BstV1I	GCAGC	4 cut(s)	412, 415, 1735, 1768
BstV2I	GAAGAC	1 cut(s)	1209
Bsu15I	ATCGAT	1 cut(s)	23
BsuI	GTATCC	2 cut(s)	145, 1687
BsuRI	GGCC	4 cut(s)	395, 1461, 1474, 1900
BsuTUI	ATCGAT	1 cut(s)	23
BtgZI	GCGATG	1 cut(s)	1022
BtrI	CACGTC	1 cut(s)	232
BtsCI	GGATG	2 cut(s)	582, 640
BtsI	GCAGTG	2 cut(s)	211, 597
BtsIMutI	CAGTG	3 cut(s)	211, 597, 1613
Cac8I	GCNNGC	6 cut(s)	291, 656, 986, 1256, 1297, 1645
CciI	TCATGA	1 cut(s)	1189
CfoI	GCGC	4 cut(s)	258, 321, 479, 979
Cfr10I	RCCGGY	1 cut(s)	348
Cfr13I	GGNCC	4 cut(s)	166, 274, 393, 1472
Cfr9I	CCCGGG	1 cut(s)	270
ClaI	ATCGAT	1 cut(s)	23
CseI	GACGC	3 cut(s)	298, 368, 1827
Csp6I	GTAC	5 cut(s)	376, 433, 619, 1136, 1485
CspAI	ACCGGT	1 cut(s)	348
CviQI	GTAC	5 cut(s)	376, 433, 619, 1136, 1485
DdeI	CTNAG	3 cut(s)	455, 879, 1752
DinI	GGCGCC	1 cut(s)	478
DpnI	GATC	8 cut(s)	26, 151, 446, 971, 1263, 1421, 1757, 1796
DpnII	GATC	8 cut(s)	24, 149, 444, 969, 1261, 1419, 1755, 1794
DraI	TTTAAA	1 cut(s)	1722
DrdI	GACNNNNNNGTC	1 cut(s)	1379
DseDI	GACNNNNNNGTC	1 cut(s)	1379
EciI	GGCGGA	1 cut(s)	647
Ecl136II	GAGCTC	1 cut(s)	289
Eco147I	AGGCCT	1 cut(s)	1461
Eco24I	GRGCYC	4 cut(s)	291, 490, 945, 1885
Eco31I	GGTCTC	1 cut(s)	161
Eco47I	GGWCC	2 cut(s)	166, 274
Eco53kI	GAGCTC	1 cut(s)	289
Eco88I	CYCGRG	3 cut(s)	158, 270, 1403
EcoICRI	GAGCTC	1 cut(s)	289
EcoO109I	RGGNCCY	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	972
EcoT22I	ATGCAT	1 cut(s)	1594
EcoT38I	GRGCYC	4 cut(s)	291, 490, 945, 1885
EgeI	GGCGCC	1 cut(s)	478
EheI	GGCGCC	1 cut(s)	478
Esp3I	CGTCTC	1 cut(s)	176
FalI	AAGNNNNNCTT	2 cut(s)	1190, 1222
FaqI	GGGAC	3 cut(s)	260, 436, 1844
FauI	CCCGC	1 cut(s)	977
FbaI	TGATCA	1 cut(s)	444
FokI	GGATG	2 cut(s)	589, 647
FriOI	GRGCYC	4 cut(s)	291, 490, 945, 1885
FspBI	CTAG	3 cut(s)	735, 1529, 1902
FspI	TGCGCA	1 cut(s)	257
GlaI	GCGC	4 cut(s)	257, 320, 478, 978
GsaI	CCCAGC	3 cut(s)	423, 888, 1356
HaeII	RGCGCY	2 cut(s)	480, 980
HaeIII	GGCC	4 cut(s)	395, 1461, 1474, 1900
HapII	CCGG	9 cut(s)	185, 271, 306, 324, 349, 363, 839, 1364, 1691
HgaI	GACGC	3 cut(s)	298, 368, 1827
HhaI	GCGC	4 cut(s)	258, 321, 479, 979
Hin1I	GRCGYC	3 cut(s)	309, 360, 477
Hin6I	GCGC	4 cut(s)	256, 319, 477, 977
HinP1I	GCGC	4 cut(s)	256, 319, 477, 977
HindIII	AAGCTT	2 cut(s)	785, 1425
HinfI	GANTC	3 cut(s)	1285, 1390, 1606
HpaII	CCGG	9 cut(s)	185, 271, 306, 324, 349, 363, 839, 1364, 1691
HphI	GGTGA	4 cut(s)	592, 1294, 1324, 1780
Hpy166II	GTNNAC	3 cut(s)	106, 433, 1149
Hpy188I	TCNGA	2 cut(s)	18, 1161
Hpy188III	TCNNGA	4 cut(s)	173, 518, 1190, 1804
Hpy8I	GTNNAC	3 cut(s)	106, 433, 1149
Hpy99I	CGWCG	3 cut(s)	233, 314, 362
HpyAV	CCTTC	9 cut(s)	910, 925, 1192, 1313, 1472, 1486, 1759, 1852, 1863
HpyCH4III	ACNGT	5 cut(s)	103, 532, 967, 1282, 1617
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	8 cut(s)	814, 1174, 1254, 1299, 1557, 1592, 1613, 1784
HpyF10VI	GCNNNNNNNGC	3 cut(s)	485, 985, 1653
HpyF3I	CTNAG	3 cut(s)	455, 879, 1752
HpySE526I	ACGT	1 cut(s)	231
Hsp92I	GRCGYC	3 cut(s)	309, 360, 477
HspAI	GCGC	4 cut(s)	256, 319, 477, 977
KasI	GGCGCC	1 cut(s)	476
KflI	GGGWCCC	1 cut(s)	274
KpnI	GGTACC	1 cut(s)	1488
Ksp22I	TGATCA	1 cut(s)	444
Kzo9I	GATC	8 cut(s)	24, 149, 444, 969, 1261, 1419, 1755, 1794
LmnI	GCTCC	2 cut(s)	326, 520
Lsp1109I	GCAGC	4 cut(s)	412, 415, 1735, 1768
LweI	GCATC	3 cut(s)	543, 652, 889
MaeI	CTAG	3 cut(s)	735, 1529, 1902
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	2 cut(s)	1057, 1561
MalI	GATC	8 cut(s)	26, 151, 446, 971, 1263, 1421, 1757, 1796
MboI	GATC	8 cut(s)	24, 149, 444, 969, 1261, 1419, 1755, 1794
MhlI	GDGCHC	5 cut(s)	291, 490, 603, 945, 1885
Mly113I	GGCGCC	1 cut(s)	477
Mph1103I	ATGCAT	1 cut(s)	1594
MroXI	GAANNNNTTC	1 cut(s)	1323
MseI	TTAA	6 cut(s)	329, 1226, 1499, 1581, 1721, 1848
MspI	CCGG	9 cut(s)	185, 271, 306, 324, 349, 363, 839, 1364, 1691
MspR9I	CCNGG	6 cut(s)	185, 271, 272, 364, 974, 1365
Mva1269I	GAATGC	1 cut(s)	1510
MvaI	CCWGG	1 cut(s)	974
MvnI	CGCG	1 cut(s)	1821
MwoI	GCNNNNNNNGC	3 cut(s)	485, 985, 1653
NarI	GGCGCC	1 cut(s)	477
NciI	CCSGG	5 cut(s)	185, 271, 272, 364, 1365
NdeII	GATC	8 cut(s)	24, 149, 444, 969, 1261, 1419, 1755, 1794
NlaIV	GGNNCC	5 cut(s)	189, 275, 276, 478, 1486
NmuCI	GTSAC	1 cut(s)	1561
NsbI	TGCGCA	1 cut(s)	257
NsiI	ATGCAT	1 cut(s)	1594
NspI	RCATGY	3 cut(s)	806, 1258, 1634
PaeI	GCATGC	1 cut(s)	1258
PagI	TCATGA	1 cut(s)	1189
PceI	AGGCCT	1 cut(s)	1461
PciI	ACATGT	1 cut(s)	802
PcsI	WCGNNNNNNNCGW	2 cut(s)	228, 1882
PctI	GAATGC	1 cut(s)	1510
PdmI	GAANNNNTTC	1 cut(s)	1323
PfeI	GAWTC	3 cut(s)	1285, 1390, 1606
PflMI	CCANNNNNTGG	1 cut(s)	1481
PinAI	ACCGGT	1 cut(s)	348
PluTI	GGCGCC	1 cut(s)	480
PpuMI	RGGWCCY	1 cut(s)	274
PscI	ACATGT	1 cut(s)	802
PshBI	ATTAAT	1 cut(s)	1226
PsiI	TTATAA	1 cut(s)	1734
Psp124BI	GAGCTC	1 cut(s)	291
Psp5II	RGGWCCY	1 cut(s)	274
Psp6I	CCWGG	1 cut(s)	972
PspFI	CCCAGC	3 cut(s)	419, 884, 1352
PspGI	CCWGG	1 cut(s)	972
PspN4I	GGNNCC	5 cut(s)	189, 275, 276, 478, 1486
PspPI	GGNCC	4 cut(s)	166, 274, 393, 1472
PspPPI	RGGWCCY	1 cut(s)	274
PstI	CTGCAG	1 cut(s)	1786
RsaI	GTAC	5 cut(s)	377, 434, 620, 1137, 1486
RsaNI	GTAC	5 cut(s)	376, 433, 619, 1136, 1485
SacI	GAGCTC	1 cut(s)	291
SaqAI	TTAA	6 cut(s)	329, 1226, 1499, 1581, 1721, 1848
Sau3AI	GATC	8 cut(s)	24, 149, 444, 969, 1261, 1419, 1755, 1794
Sau96I	GGNCC	4 cut(s)	166, 274, 393, 1472
ScrFI	CCNGG	6 cut(s)	185, 271, 272, 364, 974, 1365
SduI	GDGCHC	5 cut(s)	291, 490, 603, 945, 1885
SfaNI	GCATC	3 cut(s)	543, 652, 889
SfcI	CTRYAG	1 cut(s)	1782
SfoI	GGCGCC	1 cut(s)	478
SinI	GGWCC	2 cut(s)	166, 274
SmaI	CCCGGG	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
SphI	GCATGC	1 cut(s)	1258
SseBI	AGGCCT	1 cut(s)	1461
SsiI	CCGC	9 cut(s)	225, 354, 466, 556, 632, 695, 950, 984, 1821
SspDI	GGCGCC	1 cut(s)	476
SspI	AATATT	1 cut(s)	252
SspMI	CTAG	3 cut(s)	735, 1529, 1902
SstI	GAGCTC	1 cut(s)	291
StuI	AGGCCT	1 cut(s)	1461
StyD4I	CCNGG	6 cut(s)	183, 269, 270, 362, 972, 1363
TaaI	ACNGT	5 cut(s)	103, 532, 967, 1282, 1617
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	6 cut(s)	23, 174, 603, 834, 1422, 1885
TatI	WGTACW	1 cut(s)	432
TauI	GCSGC	6 cut(s)	227, 357, 469, 559, 698, 953
TfiI	GAWTC	3 cut(s)	1285, 1390, 1606
Tru1I	TTAA	6 cut(s)	329, 1226, 1499, 1581, 1721, 1848
Tru9I	TTAA	6 cut(s)	329, 1226, 1499, 1581, 1721, 1848
TscAI	CASTG	3 cut(s)	218, 597, 1620
TseFI	GTSAC	1 cut(s)	1561
TseI	GCWGC	4 cut(s)	400, 403, 1748, 1781
Tsp45I	GTSAC	1 cut(s)	1561
TspDTI	ATGAA	5 cut(s)	621, 1353, 1382, 1517, 1598
TspGWI	ACGGA	2 cut(s)	158, 1891
TspMI	CCCGGG	1 cut(s)	270
TspRI	CASTG	3 cut(s)	218, 597, 1620
Van91I	CCANNNNNTGG	1 cut(s)	1481
VpaK11BI	GGWCC	2 cut(s)	166, 274
VspI	ATTAAT	1 cut(s)	1226
XapI	RAATTY	2 cut(s)	260, 367
XceI	RCATGY	3 cut(s)	806, 1258, 1634
XmaI	CCCGGG	1 cut(s)	270
XmnI	GAANNNNTTC	1 cut(s)	1323
XspI	CTAG	3 cut(s)	735, 1529, 1902
Zsp2I	ATGCAT	1 cut(s)	1594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.