Rw0G010990

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00475
OG0012937
Physical Location & Seq
Reverse (-)
5138 .. 7075
1938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G010990.1

Sequence Viewer

Length: 1869 bp
ATGCGAAGGTTGTATCAGAAATCGATCTTTCTCTACACCAAACCCAATCTCTCAATTTCAATTCAATTTCAATTTCTTCACAAACCCACCAAACAAACCAACAACCATGTATCCAGCGAACGAAGATCAGGTCTCGGGTTGGTCCGTCTCGAAACCGACCCGGAACCAAACCCAGACGACCCGACCCACTGCGAGTTCGCCGCCGACGTGGAGAAGATATACAGAATATTGCGCAAATTCCACTCCCGGGTCCCCAAATTAGAGCTCGCTCTACATCAATCCGGCGTCGTTTTGCGCTCCGGCTTAACCGAGCGAGTGCTGAACCGGTGCGGCGACGCCGGGAATTTAGGGTACAGGTTCTTCGTCTGGGCCTCGCAGCAGCCCAATTACAGACCCAGCTACGATGTGTACAAAGCCATGATCAAGTCCCTAAGCAAAATGCGGCAATTCGGCGCCGTTTGGGCTCTGCTTGAGGAGATGAGGAGAGAAAATCAGGAGCTAATTACTGTGGAAATGTTTGTGGTTTTGATGCGGCGTTTCGCTTCGGCGAGGATGGTGAAGAAAGCAGTGGAGGTGCTCGATGAAATGCCCAAGTACGGGTGCGAGGCGGATGAGTATGCTTTTGGGTGCTTGCTTGATGCTCTGTGTAAAAATGGGAGTGTGAAAGAAGCGGCGAGTTTGTTTGAGGATATGAGAGTTAGGTTCAAGCCTAGTATTAGGCATTTTACTTCTTTGTTGTATGGGTGGTGTAGAGCAGGGAAGCTTATGGAGGCGAAACATGTGTTGGTGCAGATGAGGGAGGGAGGGTTCGAGCCGGACATTGTGGTGTATAACAATTTGCTTGGTGGGTATGCTCAGGCTGGGAAGATGGCTGATGCGTATGAGCTGTTGAAGGAGATGAGGAGGAAGGGTTGTGAGCCCAATGCGGCTTCGTATACGACTGTCATCCAGGCGCTTTGCGGGCAGGAGAAGATGGAGGAGGCGATGAGGGTGTTTGTGGAGATGGAGAGGAGTGGTTGTGAGGCTGATGTTGTTACTTATACTACTTTGATTGGTGGGTTTTGTAAGTGGGGGAAGATTGTGAGGAGTTATGAGATTTTGGAGAGCATGGTACAGAGAGGGTTTACGCCGAGTCAGATGACTTACTTGCAGATTATGTTGGCTCATGAGAAGAAGGAAGACTTGGAGGAGTGTGTGGAATTAATGGGGGAGATGAGGAAGATTGGTTGCATGCCTGATCTTGGTATTTACAACACGGTGAAAGAAGGTGTTCGGCTTTGGAATGAAATGGAAGAAGCTGGGTTTTCTCCGGGGCTTGACACCTTTGTCATTATGATTCATGGATTTCTCGGGCAAGGTTGTTTGATCGAAGCTTGTGATTACTTCAAAGAAATGGTTGGCAGAGGCCTTCTATCTGGGCCACAATATGGTACCTTGAAGGAGTTAATGAATGCTTTGTTAAGAGATGAGAAGCTAGAAATGGCTAAAGATGTTTGGAGTTGCATTGTGACCAAGGGTTGTGAGCTTAACGTGTATGCATGGACAATTTGGATTCATGCACTGTTTTCAAAGGGGCATGTGAAAGAGGCTTGCTCATACTGCTTGGACATGATGGAGGCAGATGTAATGCCACAGCCGGATACTTTTGCGAAGCTCATGCGTGGTTTAAAGAAACTTTATAACAGACAGATTGCTGCTGAGATCACAGAGAAGGTGAGGCAGATGGCTGCAGATAGAAAGATCACTTTCAAGATGTATAAAAGACGCGGGGAGAGGGACTTGAACGAAAAAGTTAAGGAGAAGAAGGATGGGGGAAGGAAACGGAGGGCTCGAAAACGGCAATGGCCTAGTAAAGCTAAAGCCTTATAG

Protein Analysis

622

Amino Acids

71.54

Weight (kDa)

8.97

Isoelectric Point (pI)

37.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 175 - 217 3.8e-08 PPR repeat family
PPR_long PF17177 185 - 302 7.1e-07 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 200 - 232 6e-08 PPR repeat
PPR_3 PF13812 227 - 283 2.6e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 235 - 266 7.6e-06 PPR repeat
PPR_3 PF13812 262 - 319 5.2e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 269 - 301 1.9e-08 PPR repeat
PPR_2 PF13041 272 - 320 3.5e-18 PPR repeat family
PPR PF01535 275 - 305 3.1e-08 PPR repeat
PPR_long PF17177 290 - 370 7e-06 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 303 - 336 7.6e-09 PPR repeat
PPR_2 PF13041 308 - 356 2.5e-17 PPR repeat family
PPR PF01535 311 - 340 9.2e-07 PPR repeat
PPR_3 PF13812 330 - 386 1.1e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 339 - 371 1.9e-09 PPR repeat
PPR_2 PF13041 343 - 383 7.1e-09 PPR repeat family
PPR PF01535 345 - 375 2.2e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012937)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65820
fragaria_vesca FvH4_1g18320
prunus_persica Prupe.6G215900_v2.0.a1
pyrus_communis pycom02g15460
rosa_chinensis RchiOBHm_Chr2g0108971
rosa_laevigata RLG00000017699
rosa_multiflora Rmu_co8481135.1_g000001 Rmu_sc0014080.1_g000003
rosa_roxburghii Rroxscaffold_2G00134670
rosa_rugosa Rorug02G0156700
rosa_samantha Rh2AG150300 Rh2AG207400 Rh2BG155900 Rh2BG218600 Rh2CG210600 Rh2DG156000 Rh2DG213600
rosa_wichuraiana Rw0G010990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1680
AasI GACNNNNNNGTC 1 cut(s) 1325
Acc16I TGCGCA 1 cut(s) 233
Acc65I GGTACC 1 cut(s) 1430
AccB1I GGYRCC 2 cut(s) 452, 1430
AccB7I CCANNNNNTGG 1 cut(s) 1427
AccI GTMKAC 1 cut(s) 935
AccII CGCG 1 cut(s) 1767
AciI CCGC 9 cut(s) 201, 330, 442, 532, 608, 671, 926, 960, 1767
AcsI RAATTY 2 cut(s) 236, 343
AcyI GRCGYC 3 cut(s) 285, 336, 453
AfaI GTAC 5 cut(s) 353, 410, 596, 1113, 1432
AfiI CCNNNNNNNGG 5 cut(s) 247, 596, 597, 1241, 1427
AflIII ACRYGT 2 cut(s) 778, 1530
AgeI ACCGGT 1 cut(s) 324
AjiI CACGTC 1 cut(s) 208
AjnI CCWGG 1 cut(s) 948
AjuI GAANNNNNNNTTGG 4 cut(s) 767, 799, 1166, 1198
AloI GAACNNNNNNTCC 2 cut(s) 791, 823
Alw21I GWGCWC 2 cut(s) 267, 579
Alw26I GTCTC 2 cut(s) 137, 152
Ama87I CYCGRG 3 cut(s) 134, 246, 1349
AoxI GGCC 4 cut(s) 369, 1405, 1418, 1844
ApeKI GCWGC 4 cut(s) 376, 379, 1694, 1727
ApoI RAATTY 2 cut(s) 236, 343
ArsI GACNNNNNNTTYG 2 cut(s) 115, 147
AseI ATTAAT 1 cut(s) 1202
AsiGI ACCGGT 1 cut(s) 324
Asp700I GAANNNNTTC 1 cut(s) 1269
Asp718I GGTACC 1 cut(s) 1430
AspLEI GCGC 4 cut(s) 234, 297, 455, 955
AspS9I GGNCC 4 cut(s) 142, 250, 369, 1418
AsuC2I CCSGG 5 cut(s) 161, 247, 248, 340, 1311
AsuHPI GGTGA 3 cut(s) 568, 1270, 1726
AvaI CYCGRG 3 cut(s) 134, 246, 1349
AvaII GGWCC 2 cut(s) 142, 250
BanI GGYRCC 2 cut(s) 452, 1430
BanII GRGCYC 4 cut(s) 267, 466, 921, 1831
BarI GAAGNNNNNNTAC 2 cut(s) 344, 376
BbsI GAAGAC 1 cut(s) 1185
Bbv12I GWGCWC 2 cut(s) 267, 579
BbvI GCAGC 4 cut(s) 388, 391, 1681, 1714
BccI CCATC 7 cut(s) 547, 862, 967, 997, 1606, 1717, 1802
BceAI ACGGC 2 cut(s) 440, 1853
BcgI CGANNNNNNTGC 2 cut(s) 1639, 1673
BciT130I CCWGG 1 cut(s) 950
BciVI GTATCC 2 cut(s) 121, 1633
BclI TGATCA 1 cut(s) 420
BcnI CCSGG 5 cut(s) 161, 247, 248, 340, 1311
BcoDI GTCTC 2 cut(s) 137, 152
BfaI CTAG 3 cut(s) 711, 1475, 1848
BfmI CTRYAG 1 cut(s) 1728
BfoI RGCGCY 2 cut(s) 456, 956
BfuI GTATCC 2 cut(s) 121, 1633
BglI GCCNNNNNGGC 1 cut(s) 461
Bme1390I CCNGG 6 cut(s) 161, 247, 248, 340, 950, 1311
Bme18I GGWCC 2 cut(s) 142, 250
BmeT110I CYCGRG 3 cut(s) 134, 246, 1349
BmgBI CACGTC 1 cut(s) 208
BmgT120I GGNCC 4 cut(s) 142, 250, 369, 1418
BmiI GGNNCC 5 cut(s) 165, 251, 252, 454, 1432
BmrFI CCNGG 6 cut(s) 161, 247, 248, 340, 950, 1311
BmsI GCATC 3 cut(s) 519, 628, 865
BpiI GAAGAC 1 cut(s) 1185
BplI GAGNNNNNCTC 2 cut(s) 1577, 1609
Bpu10I CCTNAGC 2 cut(s) 431, 855
BpuEI CTTGAG 1 cut(s) 491
BpuMI CCSGG 5 cut(s) 161, 247, 248, 340, 1311
Bsa29I ATCGAT 1 cut(s) 23
BsaHI GRCGYC 3 cut(s) 285, 336, 453
BsaI GGTCTC 1 cut(s) 137
BsaJI CCNNGG 3 cut(s) 246, 1310, 1512
BsaWI WCCGGW 1 cut(s) 324
BsaXI ACNNNNNCTCC 6 cut(s) 791, 821, 895, 925, 1003, 1033
Bsc4I CCNNNNNNNGG 5 cut(s) 247, 596, 597, 1241, 1427
Bse118I RCCGGY 1 cut(s) 324
Bse3DI GCAATG 1 cut(s) 1847
BseBI CCWGG 1 cut(s) 950
BseCI ATCGAT 1 cut(s) 23
BseDI CCNNGG 3 cut(s) 246, 1310, 1512
BseGI GGATG 4 cut(s) 558, 616, 945, 1813
BseLI CCNNNNNNNGG 5 cut(s) 247, 596, 597, 1241, 1427
BseMI GCAATG 1 cut(s) 1847
BseMII CTCAG 2 cut(s) 869, 1689
BseRI GAGGAG 7 cut(s) 488, 496, 916, 992, 1024, 1099, 1202
BseXI GCAGC 4 cut(s) 388, 391, 1681, 1714
BseYI CCCAGC 3 cut(s) 395, 860, 1298
BsgI GTGCAG 1 cut(s) 809
Bsh1236I CGCG 1 cut(s) 1767
BshFI GGCC 4 cut(s) 371, 1407, 1420, 1846
BshNI GGYRCC 2 cut(s) 452, 1430
BshTI ACCGGT 1 cut(s) 324
BshVI ATCGAT 1 cut(s) 23
BsiHKAI GWGCWC 2 cut(s) 267, 579
BsiHKCI CYCGRG 3 cut(s) 134, 246, 1349
BsiSI CCGG 9 cut(s) 161, 247, 282, 300, 325, 339, 815, 1310, 1637
BslFI GGGAC 3 cut(s) 236, 412, 1790
BslI CCNNNNNNNGG 5 cut(s) 247, 596, 597, 1241, 1427
BsmAI GTCTC 2 cut(s) 137, 152
BsmBI CGTCTC 1 cut(s) 152
BsmFI GGGAC 3 cut(s) 236, 412, 1790
BsmI GAATGC 1 cut(s) 1456
BsnI GGCC 4 cut(s) 371, 1407, 1420, 1846
Bso31I GGTCTC 1 cut(s) 137
BsoBI CYCGRG 3 cut(s) 134, 246, 1349
Bsp1286I GDGCHC 5 cut(s) 267, 466, 579, 921, 1831
Bsp1407I TGTACA 1 cut(s) 408
Bsp143I GATC 7 cut(s) 24, 125, 420, 1237, 1365, 1701, 1740
BspACI CCGC 9 cut(s) 201, 330, 442, 532, 608, 671, 926, 960, 1767
BspANI GGCC 4 cut(s) 371, 1407, 1420, 1846
BspCNI CTCAG 2 cut(s) 868, 1690
BspDI ATCGAT 1 cut(s) 23
BspFNI CGCG 1 cut(s) 1767
BspHI TCATGA 1 cut(s) 1165
BspLI GGNNCC 5 cut(s) 165, 251, 252, 454, 1432
BspMAI CTGCAG 1 cut(s) 1732
BspT107I GGYRCC 2 cut(s) 452, 1430
BspTNI GGTCTC 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 1847
BsrFI RCCGGY 1 cut(s) 324
BsrGI TGTACA 1 cut(s) 408
BssAI RCCGGY 1 cut(s) 324
BssECI CCNNGG 3 cut(s) 246, 1310, 1512
BssMI GATC 7 cut(s) 24, 125, 420, 1237, 1365, 1701, 1740
BssNAI GTATAC 1 cut(s) 936
BssNI GRCGYC 3 cut(s) 285, 336, 453
BssT1I CCWWGG 1 cut(s) 1512
Bst1107I GTATAC 1 cut(s) 936
Bst2UI CCWGG 1 cut(s) 950
Bst4CI ACNGT 4 cut(s) 508, 943, 1258, 1563
BstACI GRCGYC 3 cut(s) 285, 336, 453
BstAUI TGTACA 1 cut(s) 408
BstC8I GCNNGC 5 cut(s) 267, 632, 962, 1232, 1591
BstDEI CTNAG 3 cut(s) 431, 855, 1698
BstF5I GGATG 4 cut(s) 558, 616, 945, 1813
BstFNI CGCG 1 cut(s) 1767
BstH2I RGCGCY 2 cut(s) 456, 956
BstHHI GCGC 4 cut(s) 234, 297, 455, 955
BstKTI GATC 7 cut(s) 27, 128, 423, 1240, 1368, 1704, 1743
BstMAI GTCTC 2 cut(s) 137, 152
BstMBI GATC 7 cut(s) 24, 125, 420, 1237, 1365, 1701, 1740
BstMWI GCNNNNNNNGC 3 cut(s) 461, 961, 1599
BstNI CCWGG 1 cut(s) 950
BstNSI RCATGY 3 cut(s) 782, 1234, 1580
BstSCI CCNGG 6 cut(s) 159, 245, 246, 338, 948, 1309
BstSFI CTRYAG 1 cut(s) 1728
BstUI CGCG 1 cut(s) 1767
BstV1I GCAGC 4 cut(s) 388, 391, 1681, 1714
BstV2I GAAGAC 1 cut(s) 1185
BstZ17I GTATAC 1 cut(s) 936
Bsu15I ATCGAT 1 cut(s) 23
BsuI GTATCC 2 cut(s) 121, 1633
BsuRI GGCC 4 cut(s) 371, 1407, 1420, 1846
BsuTUI ATCGAT 1 cut(s) 23
BtgZI GCGATG 1 cut(s) 998
BtrI CACGTC 1 cut(s) 208
BtsCI GGATG 4 cut(s) 558, 616, 945, 1813
BtsI GCAGTG 2 cut(s) 187, 573
BtsIMutI CAGTG 3 cut(s) 187, 573, 1559
Cac8I GCNNGC 5 cut(s) 267, 632, 962, 1232, 1591
CciI TCATGA 1 cut(s) 1165
CfoI GCGC 4 cut(s) 234, 297, 455, 955
Cfr10I RCCGGY 1 cut(s) 324
Cfr13I GGNCC 4 cut(s) 142, 250, 369, 1418
Cfr9I CCCGGG 1 cut(s) 246
ClaI ATCGAT 1 cut(s) 23
CseI GACGC 3 cut(s) 274, 344, 1773
Csp6I GTAC 5 cut(s) 352, 409, 595, 1112, 1431
CspAI ACCGGT 1 cut(s) 324
CviQI GTAC 5 cut(s) 352, 409, 595, 1112, 1431
DdeI CTNAG 3 cut(s) 431, 855, 1698
DinI GGCGCC 1 cut(s) 454
DpnI GATC 7 cut(s) 26, 127, 422, 1239, 1367, 1703, 1742
DpnII GATC 7 cut(s) 24, 125, 420, 1237, 1365, 1701, 1740
DraI TTTAAA 1 cut(s) 1668
DrdI GACNNNNNNGTC 1 cut(s) 1325
DseDI GACNNNNNNGTC 1 cut(s) 1325
EciI GGCGGA 1 cut(s) 623
Ecl136II GAGCTC 1 cut(s) 265
Eco130I CCWWGG 1 cut(s) 1512
Eco147I AGGCCT 1 cut(s) 1407
Eco24I GRGCYC 4 cut(s) 267, 466, 921, 1831
Eco31I GGTCTC 1 cut(s) 137
Eco47I GGWCC 2 cut(s) 142, 250
Eco53kI GAGCTC 1 cut(s) 265
Eco88I CYCGRG 3 cut(s) 134, 246, 1349
EcoICRI GAGCTC 1 cut(s) 265
EcoO109I RGGNCCY 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 948
EcoT14I CCWWGG 1 cut(s) 1512
EcoT22I ATGCAT 1 cut(s) 1540
EcoT38I GRGCYC 4 cut(s) 267, 466, 921, 1831
EgeI GGCGCC 1 cut(s) 454
EheI GGCGCC 1 cut(s) 454
ErhI CCWWGG 1 cut(s) 1512
Esp3I CGTCTC 1 cut(s) 152
FalI AAGNNNNNCTT 2 cut(s) 1166, 1198
FaqI GGGAC 3 cut(s) 236, 412, 1790
FauI CCCGC 2 cut(s) 953, 1760
FbaI TGATCA 1 cut(s) 420
FblI GTMKAC 1 cut(s) 935
FokI GGATG 4 cut(s) 565, 623, 932, 1820
FriOI GRGCYC 4 cut(s) 267, 466, 921, 1831
FspBI CTAG 3 cut(s) 711, 1475, 1848
FspI TGCGCA 1 cut(s) 233
GlaI GCGC 4 cut(s) 233, 296, 454, 954
GsaI CCCAGC 3 cut(s) 399, 864, 1302
HaeII RGCGCY 2 cut(s) 456, 956
HaeIII GGCC 4 cut(s) 371, 1407, 1420, 1846
HapII CCGG 9 cut(s) 161, 247, 282, 300, 325, 339, 815, 1310, 1637
HgaI GACGC 3 cut(s) 274, 344, 1773
HhaI GCGC 4 cut(s) 234, 297, 455, 955
Hin1I GRCGYC 3 cut(s) 285, 336, 453
Hin6I GCGC 4 cut(s) 232, 295, 453, 953
HinP1I GCGC 4 cut(s) 232, 295, 453, 953
HindIII AAGCTT 2 cut(s) 761, 1371
HinfI GANTC 3 cut(s) 1132, 1336, 1552
HpaII CCGG 9 cut(s) 161, 247, 282, 300, 325, 339, 815, 1310, 1637
HphI GGTGA 3 cut(s) 568, 1270, 1726
Hpy166II GTNNAC 3 cut(s) 409, 936, 1125
Hpy188I TCNGA 2 cut(s) 18, 1137
Hpy188III TCNNGA 4 cut(s) 149, 494, 1166, 1750
Hpy8I GTNNAC 3 cut(s) 409, 936, 1125
Hpy99I CGWCG 3 cut(s) 209, 290, 338
HpyAV CCTTC 9 cut(s) 886, 901, 1168, 1259, 1418, 1432, 1705, 1798, 1809
HpyCH4III ACNGT 4 cut(s) 508, 943, 1258, 1563
HpyCH4IV ACGT 2 cut(s) 207, 1530
HpyCH4V TGCA 7 cut(s) 790, 1150, 1230, 1503, 1538, 1559, 1730
HpyF10VI GCNNNNNNNGC 3 cut(s) 461, 961, 1599
HpyF3I CTNAG 3 cut(s) 431, 855, 1698
HpySE526I ACGT 2 cut(s) 207, 1530
Hsp92I GRCGYC 3 cut(s) 285, 336, 453
HspAI GCGC 4 cut(s) 232, 295, 453, 953
KasI GGCGCC 1 cut(s) 452
KflI GGGWCCC 1 cut(s) 250
KpnI GGTACC 1 cut(s) 1434
Ksp22I TGATCA 1 cut(s) 420
Kzo9I GATC 7 cut(s) 24, 125, 420, 1237, 1365, 1701, 1740
LmnI GCTCC 2 cut(s) 302, 496
Lsp1109I GCAGC 4 cut(s) 388, 391, 1681, 1714
LweI GCATC 3 cut(s) 519, 628, 865
MaeI CTAG 3 cut(s) 711, 1475, 1848
MaeII ACGT 2 cut(s) 207, 1530
MaeIII GTNAC 2 cut(s) 1033, 1507
MalI GATC 7 cut(s) 26, 127, 422, 1239, 1367, 1703, 1742
MboI GATC 7 cut(s) 24, 125, 420, 1237, 1365, 1701, 1740
MhlI GDGCHC 5 cut(s) 267, 466, 579, 921, 1831
Mly113I GGCGCC 1 cut(s) 453
MlyI GAGTC 1 cut(s) 1141
Mph1103I ATGCAT 1 cut(s) 1540
MroXI GAANNNNTTC 1 cut(s) 1269
MseI TTAA 7 cut(s) 305, 1202, 1445, 1460, 1527, 1667, 1794
MslI CAYNNNNRTG 1 cut(s) 824
MspI CCGG 9 cut(s) 161, 247, 282, 300, 325, 339, 815, 1310, 1637
MspR9I CCNGG 6 cut(s) 161, 247, 248, 340, 950, 1311
Mva1269I GAATGC 1 cut(s) 1456
MvaI CCWGG 1 cut(s) 950
MvnI CGCG 1 cut(s) 1767
MwoI GCNNNNNNNGC 3 cut(s) 461, 961, 1599
NarI GGCGCC 1 cut(s) 453
NciI CCSGG 5 cut(s) 161, 247, 248, 340, 1311
NdeII GATC 7 cut(s) 24, 125, 420, 1237, 1365, 1701, 1740
NlaIV GGNNCC 5 cut(s) 165, 251, 252, 454, 1432
NmeAIII GCCGAG 1 cut(s) 1155
NmuCI GTSAC 1 cut(s) 1507
NsbI TGCGCA 1 cut(s) 233
NsiI ATGCAT 1 cut(s) 1540
NspI RCATGY 3 cut(s) 782, 1234, 1580
PaeI GCATGC 1 cut(s) 1234
PagI TCATGA 1 cut(s) 1165
PceI AGGCCT 1 cut(s) 1407
PciI ACATGT 1 cut(s) 778
PcsI WCGNNNNNNNCGW 2 cut(s) 204, 1828
PctI GAATGC 1 cut(s) 1456
PdmI GAANNNNTTC 1 cut(s) 1269
PfeI GAWTC 2 cut(s) 1336, 1552
PflMI CCANNNNNTGG 1 cut(s) 1427
PinAI ACCGGT 1 cut(s) 324
PleI GAGTC 1 cut(s) 1140
PluTI GGCGCC 1 cut(s) 456
PpsI GAGTC 1 cut(s) 1140
PpuMI RGGWCCY 1 cut(s) 250
PscI ACATGT 1 cut(s) 778
PshBI ATTAAT 1 cut(s) 1202
PsiI TTATAA 1 cut(s) 1680
Psp124BI GAGCTC 1 cut(s) 267
Psp5II RGGWCCY 1 cut(s) 250
Psp6I CCWGG 1 cut(s) 948
PspFI CCCAGC 3 cut(s) 395, 860, 1298
PspGI CCWGG 1 cut(s) 948
PspN4I GGNNCC 5 cut(s) 165, 251, 252, 454, 1432
PspPI GGNCC 4 cut(s) 142, 250, 369, 1418
PspPPI RGGWCCY 1 cut(s) 250
PstI CTGCAG 1 cut(s) 1732
RsaI GTAC 5 cut(s) 353, 410, 596, 1113, 1432
RsaNI GTAC 5 cut(s) 352, 409, 595, 1112, 1431
RseI CAYNNNNRTG 1 cut(s) 824
SacI GAGCTC 1 cut(s) 267
SaqAI TTAA 7 cut(s) 305, 1202, 1445, 1460, 1527, 1667, 1794
Sau3AI GATC 7 cut(s) 24, 125, 420, 1237, 1365, 1701, 1740
Sau96I GGNCC 4 cut(s) 142, 250, 369, 1418
SchI GAGTC 1 cut(s) 1141
ScrFI CCNGG 6 cut(s) 161, 247, 248, 340, 950, 1311
SduI GDGCHC 5 cut(s) 267, 466, 579, 921, 1831
SfaNI GCATC 3 cut(s) 519, 628, 865
SfcI CTRYAG 1 cut(s) 1728
SfoI GGCGCC 1 cut(s) 454
SinI GGWCC 2 cut(s) 142, 250
SmaI CCCGGG 1 cut(s) 248
SmiMI CAYNNNNRTG 1 cut(s) 824
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
SphI GCATGC 1 cut(s) 1234
SseBI AGGCCT 1 cut(s) 1407
SsiI CCGC 9 cut(s) 201, 330, 442, 532, 608, 671, 926, 960, 1767
SspDI GGCGCC 1 cut(s) 452
SspI AATATT 1 cut(s) 228
SspMI CTAG 3 cut(s) 711, 1475, 1848
SstI GAGCTC 1 cut(s) 267
StuI AGGCCT 1 cut(s) 1407
StyD4I CCNGG 6 cut(s) 159, 245, 246, 338, 948, 1309
StyI CCWWGG 1 cut(s) 1512
TaaI ACNGT 4 cut(s) 508, 943, 1258, 1563
TaiI ACGT 2 cut(s) 210, 1533
TaqI TCGA 6 cut(s) 23, 150, 579, 810, 1368, 1831
TatI WGTACW 1 cut(s) 408
TauI GCSGC 6 cut(s) 203, 333, 445, 535, 674, 929
TfiI GAWTC 2 cut(s) 1336, 1552
Tru1I TTAA 7 cut(s) 305, 1202, 1445, 1460, 1527, 1667, 1794
Tru9I TTAA 7 cut(s) 305, 1202, 1445, 1460, 1527, 1667, 1794
TscAI CASTG 3 cut(s) 194, 573, 1566
TseFI GTSAC 1 cut(s) 1507
TseI GCWGC 4 cut(s) 376, 379, 1694, 1727
Tsp45I GTSAC 1 cut(s) 1507
TspDTI ATGAA 5 cut(s) 597, 1299, 1328, 1463, 1544
TspGWI ACGGA 2 cut(s) 134, 1837
TspMI CCCGGG 1 cut(s) 246
TspRI CASTG 3 cut(s) 194, 573, 1566
Van91I CCANNNNNTGG 1 cut(s) 1427
VpaK11BI GGWCC 2 cut(s) 142, 250
VspI ATTAAT 1 cut(s) 1202
XapI RAATTY 2 cut(s) 236, 343
XceI RCATGY 3 cut(s) 782, 1234, 1580
XmaI CCCGGG 1 cut(s) 246
XmiI GTMKAC 1 cut(s) 935
XmnI GAANNNNTTC 1 cut(s) 1269
XspI CTAG 3 cut(s) 711, 1475, 1848
Zsp2I ATGCAT 1 cut(s) 1540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.