FvH4_1g19770

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017224
Physical Location & Seq
Forward (+)
11989576 .. 11990586
1011 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g19770.t1

Sequence Viewer

Length: 936 bp
ATGGATAATCCGGTACCCGAATCCGAAAAGCTTCCCGGAATCGCCGCCAATCTCCTCTGCGACGGCGACTTCTCTTCCTGCCGCAAATTCGCTCTCTTTGCCCGACGCTACAACCCGGACAACCCCATCCCGGACCGCATCCTCGCCGTCGCCGACGTCTTGCTCGCCGAGAAACGCCGCGACCCGAATGACTGGTACCCCATTTTGCAGCTGACCCGACCCGACTCGGGAAACCGCCGACTCGTTCGGACCCAGTTCGAGAAGCTCACGGCGCTCCTGAACCCGGAAAACAACTCCTTCCCTTTTTCCGACGAGGCGCTCCAGCTGGTTATCCGGGCCTGGGCCGCTGTGTCCGACCCGGGGGAAGAGACCCGTCTCCGAAATGGGCCCAAGAACCGGCCGGAAAGCCAGAATTGTGAAGAGGGTCTCGCCGGAGAGACGTTCTGGACGGTGTGTCCTTACTGCTATGGGATGTTCATGCCGCCGGCGCCGGAGATTTTGGTGGAGGGGAAGGAGCAGTACTATTTCACTTATGGGTATTTTCCTATGGAGTATAGTGAGGACCCAAAAAAGAGTGATGAGGATTTAAAGAAAAAGAAGAGTGAAGTGGAGGGTGTTTGTGTTGTGGAGATTTCTGATGATGATGAGGAGGTGGTGGTGGTGAAGAATGTGGGTGGTGGAGGGGGGTTTTCGGGTGGAGGGAAGGCCCCGGTGAAGAGAATGAAGGCGCCGGCGAGGCGGATGAAGGGATTGAAGACGAAAACAGTGGTGAGGAGCACCAAGAAGAGAATGGGGAATGTGGTGAGCGGGAGGGTTGGGGTGGGGAAGGAGGTTGAGTTGGGTGGTGAGTGTGGAGATGGGGATGGTGAGATGGATGGTTTGGAGTTTTATGAAGGTAAAGATGATGTCTTTGGTGGAATTGGGGATAGTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

312

Amino Acids

34.35

Weight (kDa)

4.98

Isoelectric Point (pI)

50.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19770
malus_domestica MD15G1313800.v1.1
prunus_persica Prupe.6G198600_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0111341
rosa_laevigata RLG00000017887
rosa_multiflora Rmu_co8456405.1_g000001
rosa_roxburghii Rroxscaffold_2G00132480
rosa_rugosa Rorug02G0172800
rosa_samantha Rh2AG226000 Rh2BG237800 Rh2CG229000 Rh2DG233500
rosa_wichuraiana Rw2G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 159
Acc65I GGTACC 2 cut(s) 13, 195
AccB1I GGYRCC 4 cut(s) 13, 195, 487, 727
AccBSI CCGCTC 1 cut(s) 807
AccII CGCG 1 cut(s) 180
AciI CCGC 9 cut(s) 45, 82, 136, 178, 235, 345, 482, 739, 807
AcoI YGGCCR 1 cut(s) 398
AcsI RAATTY 1 cut(s) 86
AcyI GRCGYC 3 cut(s) 156, 488, 728
AfaI GTAC 3 cut(s) 15, 197, 521
AfiI CCNNNNNNNGG 6 cut(s) 130, 227, 283, 340, 360, 396
AgsI TTSAA 1 cut(s) 754
AhdI GACNNNNNGTC 1 cut(s) 453
AjnI CCWGG 1 cut(s) 338
AluBI AGCT 4 cut(s) 31, 211, 265, 325
AluI AGCT 4 cut(s) 31, 211, 265, 325
Alw21I GWGCWC 1 cut(s) 779
Alw26I GTCTC 4 cut(s) 362, 380, 431, 431
Ama87I CYCGRG 2 cut(s) 226, 358
AoxI GGCC 5 cut(s) 336, 342, 386, 398, 705
ApaI GGGCCC 1 cut(s) 390
ApeKI GCWGC 1 cut(s) 208
ApoI RAATTY 1 cut(s) 86
Asp700I GAANNNNTTC 1 cut(s) 30
Asp718I GGTACC 2 cut(s) 13, 195
AspLEI GCGC 4 cut(s) 274, 319, 490, 730
AspS9I GGNCC 8 cut(s) 133, 249, 336, 342, 386, 387, 562, 706
AsuC2I CCSGG 8 cut(s) 36, 116, 131, 284, 335, 359, 360, 710
AsuHPI GGTGA 6 cut(s) 673, 724, 781, 814, 857, 878
AvaI CYCGRG 2 cut(s) 226, 358
AvaII GGWCC 3 cut(s) 133, 249, 562
BaeGI GKGCMC 1 cut(s) 390
BanI GGYRCC 4 cut(s) 13, 195, 487, 727
BanII GRGCYC 1 cut(s) 390
BarI GAAGNNNNNNTAC 2 cut(s) 503, 535
BbsI GAAGAC 1 cut(s) 761
Bbv12I GWGCWC 1 cut(s) 779
BbvI GCAGC 1 cut(s) 220
BccI CCATC 5 cut(s) 134, 851, 857, 865, 869
BceAI ACGGC 3 cut(s) 79, 131, 285
BciT130I CCWGG 1 cut(s) 340
BcnI CCSGG 8 cut(s) 36, 116, 131, 284, 335, 359, 360, 710
BcoDI GTCTC 4 cut(s) 362, 380, 431, 431
BfoI RGCGCY 4 cut(s) 275, 320, 491, 731
BglI GCCNNNNNGGC 1 cut(s) 736
BisI GCNGC 6 cut(s) 45, 82, 178, 209, 345, 482
BlsI GCNGC 6 cut(s) 46, 83, 179, 210, 346, 483
BmcAI AGTACT 1 cut(s) 521
Bme1390I CCNGG 9 cut(s) 36, 116, 131, 284, 335, 340, 359, 360, 710
Bme18I GGWCC 3 cut(s) 133, 249, 562
BmeRI GACNNNNNGTC 1 cut(s) 453
BmeT110I CYCGRG 2 cut(s) 226, 358
BmgT120I GGNCC 8 cut(s) 133, 249, 336, 342, 386, 387, 562, 706
BmiI GGNNCC 8 cut(s) 15, 197, 251, 388, 489, 564, 708, 729
BmrFI CCNGG 9 cut(s) 36, 116, 131, 284, 335, 340, 359, 360, 710
BmrI ACTGGG 1 cut(s) 247
BmsI GCATC 1 cut(s) 147
BmuI ACTGGG 1 cut(s) 247
BpiI GAAGAC 1 cut(s) 761
BpmI CTGGAG 1 cut(s) 305
BpuMI CCSGG 8 cut(s) 36, 116, 131, 284, 335, 359, 360, 710
BsaHI GRCGYC 3 cut(s) 156, 488, 728
BsaI GGTCTC 2 cut(s) 362, 431
BsaJI CCNNGG 4 cut(s) 339, 358, 359, 708
BsaWI WCCGGW 1 cut(s) 10
BsaXI ACNNNNNCTCC 2 cut(s) 821, 851
Bsc4I CCNNNNNNNGG 6 cut(s) 130, 227, 283, 340, 360, 396
Bse118I RCCGGY 3 cut(s) 396, 484, 730
Bse1I ACTGG 2 cut(s) 197, 253
BseBI CCWGG 1 cut(s) 340
BseDI CCNNGG 4 cut(s) 339, 358, 359, 708
BseGI GGATG 6 cut(s) 126, 138, 477, 747, 868, 880
BseLI CCNNNNNNNGG 6 cut(s) 130, 227, 283, 340, 360, 396
BseNI ACTGG 2 cut(s) 197, 253
BseRI GAGGAG 3 cut(s) 44, 662, 787
BseSI GKGCMC 1 cut(s) 390
BseX3I CGGCCG 1 cut(s) 398
BseXI GCAGC 1 cut(s) 220
Bsh1236I CGCG 1 cut(s) 180
Bsh1285I CGRYCG 1 cut(s) 401
BshFI GGCC 5 cut(s) 338, 344, 388, 400, 707
BshNI GGYRCC 4 cut(s) 13, 195, 487, 727
BsiEI CGRYCG 1 cut(s) 401
BsiHKAI GWGCWC 1 cut(s) 779
BsiHKCI CYCGRG 2 cut(s) 226, 358
BslI CCNNNNNNNGG 6 cut(s) 130, 227, 283, 340, 360, 396
BsmAI GTCTC 4 cut(s) 362, 380, 431, 431
BsmBI CGTCTC 2 cut(s) 380, 431
BsnI GGCC 5 cut(s) 338, 344, 388, 400, 707
Bso31I GGTCTC 2 cut(s) 362, 431
BsoBI CYCGRG 2 cut(s) 226, 358
Bsp120I GGGCCC 1 cut(s) 386
Bsp1286I GDGCHC 2 cut(s) 390, 779
BspACI CCGC 9 cut(s) 45, 82, 136, 178, 235, 345, 482, 739, 807
BspANI GGCC 5 cut(s) 338, 344, 388, 400, 707
BspFNI CGCG 1 cut(s) 180
BspLI GGNNCC 8 cut(s) 15, 197, 251, 388, 489, 564, 708, 729
BspT107I GGYRCC 4 cut(s) 13, 195, 487, 727
BspTNI GGTCTC 2 cut(s) 362, 431
BsrBI CCGCTC 1 cut(s) 807
BsrFI RCCGGY 3 cut(s) 396, 484, 730
BsrI ACTGG 2 cut(s) 197, 253
BssAI RCCGGY 3 cut(s) 396, 484, 730
BssECI CCNNGG 4 cut(s) 339, 358, 359, 708
BssNI GRCGYC 3 cut(s) 156, 488, 728
Bst2UI CCWGG 1 cut(s) 340
Bst4CI ACNGT 2 cut(s) 451, 766
Bst6I CTCTTC 6 cut(s) 79, 360, 414, 593, 710, 779
BstACI GRCGYC 3 cut(s) 156, 488, 728
BstC8I GCNNGC 3 cut(s) 165, 486, 732
BstF5I GGATG 6 cut(s) 126, 138, 477, 747, 868, 880
BstFNI CGCG 1 cut(s) 180
BstH2I RGCGCY 4 cut(s) 275, 320, 491, 731
BstHHI GCGC 4 cut(s) 274, 319, 490, 730
BstMAI GTCTC 4 cut(s) 362, 380, 431, 431
BstMCI CGRYCG 1 cut(s) 401
BstMWI GCNNNNNNNGC 5 cut(s) 98, 271, 344, 487, 736
BstNI CCWGG 1 cut(s) 340
BstSCI CCNGG 9 cut(s) 34, 114, 129, 282, 333, 338, 357, 358, 708
BstSLI GKGCMC 1 cut(s) 390
BstUI CGCG 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 220
BstV2I GAAGAC 1 cut(s) 761
BstZI CGGCCG 1 cut(s) 398
BsuRI GGCC 5 cut(s) 338, 344, 388, 400, 707
BtsCI GGATG 6 cut(s) 126, 138, 477, 747, 868, 880
BtsIMutI CAGTG 1 cut(s) 771
Cac8I GCNNGC 3 cut(s) 165, 486, 732
CfoI GCGC 4 cut(s) 274, 319, 490, 730
Cfr10I RCCGGY 3 cut(s) 396, 484, 730
Cfr13I GGNCC 8 cut(s) 133, 249, 336, 342, 386, 387, 562, 706
Cfr9I CCCGGG 1 cut(s) 358
CpoI CGGWCCG 1 cut(s) 133
CseI GACGC 1 cut(s) 114
Csp6I GTAC 3 cut(s) 14, 196, 520
CspI CGGWCCG 1 cut(s) 133
CviAII CATG 2 cut(s) 478, 933
CviQI GTAC 3 cut(s) 14, 196, 520
DinI GGCGCC 2 cut(s) 489, 729
DraI TTTAAA 1 cut(s) 588
DriI GACNNNNNGTC 1 cut(s) 453
EaeI YGGCCR 1 cut(s) 398
EagI CGGCCG 1 cut(s) 398
Eam1104I CTCTTC 6 cut(s) 79, 360, 414, 593, 710, 779
Eam1105I GACNNNNNGTC 1 cut(s) 453
EarI CTCTTC 6 cut(s) 79, 360, 414, 593, 710, 779
EciI GGCGGA 1 cut(s) 754
EclXI CGGCCG 1 cut(s) 398
Eco24I GRGCYC 1 cut(s) 390
Eco31I GGTCTC 2 cut(s) 362, 431
Eco47I GGWCC 3 cut(s) 133, 249, 562
Eco52I CGGCCG 1 cut(s) 398
Eco88I CYCGRG 2 cut(s) 226, 358
EcoO109I RGGNCCY 2 cut(s) 562, 706
EcoRII CCWGG 1 cut(s) 338
EcoT38I GRGCYC 1 cut(s) 390
EgeI GGCGCC 2 cut(s) 489, 729
EheI GGCGCC 2 cut(s) 489, 729
Esp3I CGTCTC 2 cut(s) 380, 431
FaeI CATG 2 cut(s) 481, 936
FaiI YATR 7 cut(s) 468, 479, 534, 548, 555, 891, 934
FatI CATG 2 cut(s) 477, 932
FauI CCCGC 1 cut(s) 800
Fnu4HI GCNGC 6 cut(s) 45, 82, 178, 209, 345, 482
FokI GGATG 6 cut(s) 113, 125, 484, 754, 875, 887
FriOI GRGCYC 1 cut(s) 390
Fsp4HI GCNGC 6 cut(s) 45, 82, 178, 209, 345, 482
GlaI GCGC 4 cut(s) 273, 318, 489, 729
GluI GCNGC 6 cut(s) 45, 82, 178, 209, 345, 482
GsuI CTGGAG 1 cut(s) 305
HaeII RGCGCY 4 cut(s) 275, 320, 491, 731
HaeIII GGCC 5 cut(s) 338, 344, 388, 400, 707
HgaI GACGC 1 cut(s) 114
HhaI GCGC 4 cut(s) 274, 319, 490, 730
Hin1I GRCGYC 3 cut(s) 156, 488, 728
Hin1II CATG 2 cut(s) 481, 936
Hin6I GCGC 4 cut(s) 272, 317, 488, 728
HinP1I GCGC 4 cut(s) 272, 317, 488, 728
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 4 cut(s) 20, 39, 224, 240
HphI GGTGA 6 cut(s) 673, 724, 781, 814, 857, 878
Hpy188I TCNGA 6 cut(s) 25, 249, 310, 355, 380, 637
Hpy188III TCNNGA 4 cut(s) 228, 259, 277, 445
Hpy99I CGWCG 5 cut(s) 65, 108, 152, 158, 314
HpyAV CCTTC 7 cut(s) 307, 505, 697, 718, 739, 820, 887
HpyCH4III ACNGT 2 cut(s) 451, 766
HpyCH4IV ACGT 2 cut(s) 156, 440
HpyCH4V TGCA 1 cut(s) 208
HpyF10VI GCNNNNNNNGC 5 cut(s) 98, 271, 344, 487, 736
HpySE526I ACGT 2 cut(s) 156, 440
Hsp92I GRCGYC 3 cut(s) 156, 488, 728
Hsp92II CATG 2 cut(s) 481, 936
HspAI GCGC 4 cut(s) 272, 317, 488, 728
KasI GGCGCC 2 cut(s) 487, 727
KpnI GGTACC 2 cut(s) 17, 199
KroI GCCGGC 2 cut(s) 484, 730
KroNI GCCGGC 2 cut(s) 486, 732
LmnI GCTCC 4 cut(s) 279, 324, 514, 774
Lsp1109I GCAGC 1 cut(s) 220
LweI GCATC 1 cut(s) 147
MaeII ACGT 2 cut(s) 156, 440
MbiI CCGCTC 1 cut(s) 807
MboII GAAGA 8 cut(s) 66, 377, 431, 610, 676, 727, 766, 796
MhlI GDGCHC 2 cut(s) 390, 779
MluCI AATT 3 cut(s) 86, 412, 918
Mly113I GGCGCC 2 cut(s) 488, 728
MlyI GAGTC 2 cut(s) 218, 234
MmeI TCCRAC 2 cut(s) 333, 378
MreI CGCCGGCG 2 cut(s) 484, 730
MroNI GCCGGC 2 cut(s) 484, 730
MroXI GAANNNNTTC 1 cut(s) 30
MseI TTAA 1 cut(s) 587
MspA1I CMGCKG 3 cut(s) 211, 325, 347
MspR9I CCNGG 9 cut(s) 36, 116, 131, 284, 335, 340, 359, 360, 710
MvaI CCWGG 1 cut(s) 340
MvnI CGCG 1 cut(s) 180
MwoI GCNNNNNNNGC 5 cut(s) 98, 271, 344, 487, 736
NaeI GCCGGC 2 cut(s) 486, 732
NarI GGCGCC 2 cut(s) 488, 728
NciI CCSGG 8 cut(s) 36, 116, 131, 284, 335, 359, 360, 710
NgoMIV GCCGGC 2 cut(s) 484, 730
NlaIII CATG 2 cut(s) 481, 936
NlaIV GGNNCC 8 cut(s) 15, 197, 251, 388, 489, 564, 708, 729
NmeAIII GCCGAG 1 cut(s) 193
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PdiI GCCGGC 2 cut(s) 486, 732
PdmI GAANNNNTTC 1 cut(s) 30
PfeI GAWTC 2 cut(s) 20, 39
PfoI TCCNGGA 2 cut(s) 34, 129
PkrI GCNGC 6 cut(s) 46, 83, 179, 210, 346, 483
PleI GAGTC 2 cut(s) 218, 234
PluTI GGCGCC 2 cut(s) 491, 731
PpsI GAGTC 2 cut(s) 218, 234
PpuMI RGGWCCY 1 cut(s) 562
Psp5II RGGWCCY 1 cut(s) 562
Psp6I CCWGG 1 cut(s) 338
PspGI CCWGG 1 cut(s) 338
PspN4I GGNNCC 8 cut(s) 15, 197, 251, 388, 489, 564, 708, 729
PspOMI GGGCCC 1 cut(s) 386
PspPI GGNCC 8 cut(s) 133, 249, 336, 342, 386, 387, 562, 706
PspPPI RGGWCCY 1 cut(s) 562
PvuII CAGCTG 2 cut(s) 211, 325
RsaI GTAC 3 cut(s) 15, 197, 521
RsaNI GTAC 3 cut(s) 14, 196, 520
Rsr2I CGGWCCG 1 cut(s) 133
RsrII CGGWCCG 1 cut(s) 133
SaqAI TTAA 1 cut(s) 587
SatI GCNGC 6 cut(s) 45, 82, 178, 209, 345, 482
Sau96I GGNCC 8 cut(s) 133, 249, 336, 342, 386, 387, 562, 706
ScaI AGTACT 1 cut(s) 521
SchI GAGTC 2 cut(s) 218, 234
ScrFI CCNGG 9 cut(s) 36, 116, 131, 284, 335, 340, 359, 360, 710
SduI GDGCHC 2 cut(s) 390, 779
SetI ASST 9 cut(s) 33, 159, 213, 267, 327, 443, 654, 834, 898
SfaNI GCATC 1 cut(s) 147
SfoI GGCGCC 2 cut(s) 489, 729
SgrAI CRCCGGYG 2 cut(s) 484, 730
SinI GGWCC 3 cut(s) 133, 249, 562
SmaI CCCGGG 1 cut(s) 360
Sse9I AATT 3 cut(s) 86, 412, 918
SsiI CCGC 9 cut(s) 45, 82, 136, 178, 235, 345, 482, 739, 807
SspDI GGCGCC 2 cut(s) 487, 727
StyD4I CCNGG 9 cut(s) 34, 114, 129, 282, 333, 338, 357, 358, 708
TaaI ACNGT 2 cut(s) 451, 766
TaiI ACGT 2 cut(s) 159, 443
TaqI TCGA 1 cut(s) 258
TasI AATT 3 cut(s) 86, 412, 918
TatI WGTACW 1 cut(s) 519
TauI GCSGC 5 cut(s) 47, 84, 180, 347, 484
TfiI GAWTC 2 cut(s) 20, 39
Tru1I TTAA 1 cut(s) 587
Tru9I TTAA 1 cut(s) 587
TscAI CASTG 1 cut(s) 771
TseI GCWGC 1 cut(s) 208
TspDTI ATGAA 4 cut(s) 466, 737, 758, 906
TspMI CCCGGG 1 cut(s) 358
TspRI CASTG 1 cut(s) 771
VpaK11BI GGWCC 3 cut(s) 133, 249, 562
XapI RAATTY 1 cut(s) 86
XcmI CCANNNNNNNNNTGG 1 cut(s) 787
XmaI CCCGGG 1 cut(s) 358
XmnI GAANNNNTTC 1 cut(s) 30
ZraI GACGTC 1 cut(s) 157
ZrmI AGTACT 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.