Prupe.6G198600_v2.0.a1

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0017224
Physical Location & Seq
Reverse (-)
20525255 .. 20526983
1729 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G198600.1

Sequence Viewer

Length: 1197 bp
ATGGTTCATGCAAAACGCAGCAGCAGCTGCTCGCCCAAAGCCCAAAAACTTCTCACCCTCTCAGCCCACTATCTCAGCCACCGAGATTTCTCTTTTTGCCGCAAATTCGCTCTCAAAGCTCGAGAGTCCGACCCGCACAACTCCGGGGCCGACCGAATCCTCGCCGTAGCTGACGTACTCCTCGCCGCCGATCACCAAAACCCAACTGACTGGTGCTCCATTCTCCAAATACCGCCACCCGGCTCCGAAAACCCGACACTCGTCCGGACCCAGTTCGAGAAACTCAAGACCCTCTTGGAACCCAGCAAGAACGGGTTCGCTTTCGCTCAGGAGGCCTTTGAGCTCGTCCAGAAAGCTTGGTCCTTTCTATCGGACCAAGACAAGAAAACCCATTTCGCAAATGGGTCTGAAAATGGGCAAGAAACCCCAAAACAGAGAGAGCAGAAGGAAAAAAATGTGGGGGAAAATGGTAAGGGGTGTAATGTGGAAGAGACATTTTGGACAGTTTGTCCGTACTGCTATTACATGTTCGAGTACGGGAAGGTGTATGAGGATTGTTGCTTGAGATGCCAGAATTGCAGGAAAGCGTTCCATGGAGTGGCAATAAAGGCGCCATCACCGGATATTATAGTGCAGGGGAAGGAGCAGTACAATTTCTGTTTTGGGTATTTTCAAATGGAGTACGTGGACCCAAAGAAGCAGATGGAGACAGAGGTAACTGGCAATAAAGACAAGGATGTTGTGGTCATCTCTGATGATGATGATGGTGATGGTACTGATGATGAGTTTGAGGATGATTTGTTGGATGGTAATGTGGGTTTTGAGGGAATGCATGAAGAAAAGGTAAAGATTGGGAGTGAAGGAGTTGTGGGAACTGATATAGGTGGGAGTGGAAGAGCAGAGTTGAGGAGTGAAGGGAGGACACCAGTGAAGAGGGTGAAGACTCTAGCAAGGCGTCTGAAGAGCGTCAAATCGAAGTCCGTGGCAAGGAATACGAAGAAGATAATGGGAAATGAGATGAGAAGCAGGAGGGTTGAGTTGATGGGTGATGAGAGGGTGGAAGGAGCGGACACGAGTGTTGAAGATGGAAATGGAATTGATAAGGGAGGTAGTGGAAGTGGGAGTGGAATGGATGGGCTGGAGTTTTTTGAAGGAGAAGATGATATCTATGTTGGTATAGGGGATAGTCCGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

399

Amino Acids

44.16

Weight (kDa)

5.22

Isoelectric Point (pI)

31.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19770
malus_domestica MD15G1313800.v1.1
prunus_persica Prupe.6G198600_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0111341
rosa_laevigata RLG00000017887
rosa_multiflora Rmu_co8456405.1_g000001
rosa_roxburghii Rroxscaffold_2G00132480
rosa_rugosa Rorug02G0172800
rosa_samantha Rh2AG226000 Rh2BG237800 Rh2CG229000 Rh2DG233500
rosa_wichuraiana Rw2G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 610
AccB7I CCANNNNNTGG 1 cut(s) 598
AccBSI CCGCTC 1 cut(s) 1067
AccIII TCCGGA 1 cut(s) 264
AciI CCGC 5 cut(s) 100, 134, 186, 233, 1067
AcsI RAATTY 1 cut(s) 104
AcuI CTGAAG 1 cut(s) 980
AcyI GRCGYC 2 cut(s) 611, 955
AfaI GTAC 6 cut(s) 177, 515, 536, 650, 683, 775
AfiI CCNNNNNNNGG 3 cut(s) 239, 598, 987
AflIII ACRYGT 1 cut(s) 525
AgsI TTSAA 3 cut(s) 674, 1082, 1151
AhdI GACNNNNNGTC 1 cut(s) 507
AluBI AGCT 5 cut(s) 27, 119, 170, 343, 356
AluI AGCT 5 cut(s) 27, 119, 170, 343, 356
Alw21I GWGCWC 2 cut(s) 218, 345
Alw26I GTCTC 2 cut(s) 485, 701
AlwNI CAGNNNCTG 1 cut(s) 27
Ama87I CYCGRG 1 cut(s) 120
Aor13HI TCCGGA 1 cut(s) 264
AoxI GGCC 2 cut(s) 147, 333
ApeKI GCWGC 4 cut(s) 18, 21, 24, 27
ApoI RAATTY 1 cut(s) 104
Asp700I GAANNNNTTC 2 cut(s) 314, 587
AspLEI GCGC 1 cut(s) 613
AspS9I GGNCC 5 cut(s) 147, 267, 360, 373, 688
AsuC2I CCSGG 2 cut(s) 145, 240
AsuHPI GGTGA 6 cut(s) 46, 185, 609, 779, 949, 1058
AvaI CYCGRG 1 cut(s) 120
AvaII GGWCC 4 cut(s) 267, 360, 373, 688
BanI GGYRCC 1 cut(s) 610
BanII GRGCYC 1 cut(s) 345
BarI GAAGNNNNNNTAC 2 cut(s) 632, 664
BauI CACGAG 1 cut(s) 1072
BbsI GAAGAC 1 cut(s) 947
Bbv12I GWGCWC 2 cut(s) 218, 345
BbvI GCAGC 4 cut(s) 14, 30, 33, 36
BccI CCATC 8 cut(s) 622, 697, 758, 764, 800, 1036, 1079, 1127
BceAI ACGGC 1 cut(s) 149
BcnI CCSGG 2 cut(s) 145, 240
BcoDI GTCTC 2 cut(s) 485, 701
BfaI CTAG 1 cut(s) 947
BfoI RGCGCY 1 cut(s) 614
BisI GCNGC 6 cut(s) 19, 22, 25, 28, 100, 186
BlsI GCNGC 6 cut(s) 20, 23, 26, 29, 101, 187
Bme1390I CCNGG 2 cut(s) 145, 240
Bme18I GGWCC 4 cut(s) 267, 360, 373, 688
BmeRI GACNNNNNGTC 1 cut(s) 507
BmeT110I CYCGRG 1 cut(s) 120
BmgT120I GGNCC 5 cut(s) 147, 267, 360, 373, 688
BmiI GGNNCC 6 cut(s) 148, 244, 269, 300, 612, 690
BmrFI CCNGG 2 cut(s) 145, 240
BmrI ACTGGG 1 cut(s) 265
BmsI GCATC 1 cut(s) 557
BmuI ACTGGG 1 cut(s) 265
BoxI GACNNNNGTC 1 cut(s) 260
BpiI GAAGAC 1 cut(s) 947
BpmI CTGGAG 1 cut(s) 1160
Bpu10I CCTNAGC 1 cut(s) 327
BpuEI CTTGAG 2 cut(s) 269, 583
BpuMI CCSGG 2 cut(s) 145, 240
BsaAI YACGTR 1 cut(s) 685
BsaHI GRCGYC 2 cut(s) 611, 955
BsaJI CCNNGG 3 cut(s) 144, 592, 981
BsaWI WCCGGW 3 cut(s) 264, 619, 1189
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 3 cut(s) 239, 598, 987
Bse1I ACTGG 4 cut(s) 215, 271, 724, 926
BseAI TCCGGA 1 cut(s) 264
BseDI CCNNGG 3 cut(s) 144, 592, 981
BseGI GGATG 4 cut(s) 742, 799, 811, 1138
BseLI CCNNNNNNNGG 3 cut(s) 239, 598, 987
BseMII CTCAG 3 cut(s) 75, 88, 341
BseNI ACTGG 4 cut(s) 215, 271, 724, 926
BseRI GAGGAG 2 cut(s) 170, 922
BseXI GCAGC 4 cut(s) 14, 30, 33, 36
BseYI CCCAGC 1 cut(s) 302
BsgI GTGCAG 1 cut(s) 653
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 2 cut(s) 149, 335
BshNI GGYRCC 1 cut(s) 610
BsiEI CGRYCG 1 cut(s) 154
BsiHKAI GWGCWC 2 cut(s) 218, 345
BsiHKCI CYCGRG 1 cut(s) 120
BsiSI CCGG 5 cut(s) 144, 240, 265, 620, 1190
BslI CCNNNNNNNGG 3 cut(s) 239, 598, 987
BsmAI GTCTC 2 cut(s) 485, 701
BsmI GAATGC 1 cut(s) 834
BsnI GGCC 2 cut(s) 149, 335
BsoBI CYCGRG 1 cut(s) 120
Bsp1286I GDGCHC 2 cut(s) 218, 345
Bsp13I TCCGGA 1 cut(s) 264
Bsp143I GATC 1 cut(s) 190
Bsp19I CCATGG 1 cut(s) 592
BspACI CCGC 5 cut(s) 100, 134, 186, 233, 1067
BspANI GGCC 2 cut(s) 149, 335
BspCNI CTCAG 3 cut(s) 74, 87, 340
BspEI TCCGGA 1 cut(s) 264
BspLI GGNNCC 6 cut(s) 148, 244, 269, 300, 612, 690
BspQI GCTCTTC 2 cut(s) 889, 956
BspT107I GGYRCC 1 cut(s) 610
BsrBI CCGCTC 1 cut(s) 1067
BsrI ACTGG 4 cut(s) 215, 271, 724, 926
BssECI CCNNGG 3 cut(s) 144, 592, 981
BssMI GATC 1 cut(s) 190
BssNI GRCGYC 2 cut(s) 611, 955
BssSI CACGAG 1 cut(s) 1072
BssT1I CCWWGG 1 cut(s) 592
Bst2BI CACGAG 1 cut(s) 1072
Bst4CI ACNGT 1 cut(s) 505
Bst6I CTCTTC 4 cut(s) 483, 889, 926, 956
BstACI GRCGYC 2 cut(s) 611, 955
BstAPI GCANNNNNTGC 1 cut(s) 27
BstBAI YACGTR 1 cut(s) 685
BstC8I GCNNGC 1 cut(s) 32
BstDEI CTNAG 3 cut(s) 61, 74, 327
BstDSI CCRYGG 2 cut(s) 592, 981
BstF5I GGATG 4 cut(s) 742, 799, 811, 1138
BstH2I RGCGCY 1 cut(s) 614
BstHHI GCGC 1 cut(s) 613
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 2 cut(s) 485, 701
BstMBI GATC 1 cut(s) 190
BstMCI CGRYCG 1 cut(s) 154
BstMWI GCNNNNNNNGC 7 cut(s) 24, 27, 116, 332, 567, 576, 608
BstNSI RCATGY 1 cut(s) 529
BstPAI GACNNNNGTC 1 cut(s) 260
BstSCI CCNGG 2 cut(s) 143, 238
BstV1I GCAGC 4 cut(s) 14, 30, 33, 36
BstV2I GAAGAC 1 cut(s) 947
BstXI CCANNNNNNTGG 1 cut(s) 210
BsuRI GGCC 2 cut(s) 149, 335
BtgI CCRYGG 2 cut(s) 592, 981
BtsCI GGATG 4 cut(s) 742, 799, 811, 1138
BtsIMutI CAGTG 1 cut(s) 933
Cac8I GCNNGC 1 cut(s) 32
CaiI CAGNNNCTG 1 cut(s) 27
CfoI GCGC 1 cut(s) 613
Cfr13I GGNCC 5 cut(s) 147, 267, 360, 373, 688
CseI GACGC 2 cut(s) 944, 955
Csp6I GTAC 6 cut(s) 176, 514, 535, 649, 682, 774
CviAII CATG 4 cut(s) 8, 526, 593, 833
CviQI GTAC 6 cut(s) 176, 514, 535, 649, 682, 774
DdeI CTNAG 3 cut(s) 61, 74, 327
DinI GGCGCC 1 cut(s) 612
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
DriI GACNNNNNGTC 1 cut(s) 507
Eam1104I CTCTTC 4 cut(s) 483, 889, 926, 956
Eam1105I GACNNNNNGTC 1 cut(s) 507
EarI CTCTTC 4 cut(s) 483, 889, 926, 956
Ecl136II GAGCTC 1 cut(s) 343
Eco130I CCWWGG 1 cut(s) 592
Eco147I AGGCCT 1 cut(s) 335
Eco24I GRGCYC 1 cut(s) 345
Eco32I GATATC 1 cut(s) 1165
Eco47I GGWCC 4 cut(s) 267, 360, 373, 688
Eco53kI GAGCTC 1 cut(s) 343
Eco57I CTGAAG 1 cut(s) 980
Eco88I CYCGRG 1 cut(s) 120
EcoICRI GAGCTC 1 cut(s) 343
EcoRV GATATC 1 cut(s) 1165
EcoT14I CCWWGG 1 cut(s) 592
EcoT22I ATGCAT 1 cut(s) 834
EcoT38I GRGCYC 1 cut(s) 345
EgeI GGCGCC 1 cut(s) 612
EheI GGCGCC 1 cut(s) 612
ErhI CCWWGG 1 cut(s) 592
FaeI CATG 4 cut(s) 11, 529, 596, 836
FaiI YATR 9 cut(s) 9, 527, 549, 594, 629, 834, 881, 1170, 1178
FalI AAGNNNNNCTT 2 cut(s) 278, 310
FatI CATG 4 cut(s) 7, 525, 592, 832
FauI CCCGC 1 cut(s) 141
Fnu4HI GCNGC 6 cut(s) 19, 22, 25, 28, 100, 186
FokI GGATG 4 cut(s) 749, 806, 818, 1145
FriOI GRGCYC 1 cut(s) 345
Fsp4HI GCNGC 6 cut(s) 19, 22, 25, 28, 100, 186
FspBI CTAG 1 cut(s) 947
GlaI GCGC 1 cut(s) 612
GluI GCNGC 6 cut(s) 19, 22, 25, 28, 100, 186
GsaI CCCAGC 1 cut(s) 306
GsuI CTGGAG 1 cut(s) 1160
HaeII RGCGCY 1 cut(s) 614
HaeIII GGCC 2 cut(s) 149, 335
HapII CCGG 5 cut(s) 144, 240, 265, 620, 1190
HgaI GACGC 2 cut(s) 944, 955
HhaI GCGC 1 cut(s) 613
Hin1I GRCGYC 2 cut(s) 611, 955
Hin1II CATG 4 cut(s) 11, 529, 596, 836
Hin6I GCGC 1 cut(s) 611
HinP1I GCGC 1 cut(s) 611
HindIII AAGCTT 1 cut(s) 354
HinfI GANTC 3 cut(s) 125, 156, 943
HpaII CCGG 5 cut(s) 144, 240, 265, 620, 1190
HphI GGTGA 6 cut(s) 46, 185, 609, 779, 949, 1058
Hpy166II GTNNAC 1 cut(s) 688
Hpy188I TCNGA 6 cut(s) 130, 247, 373, 409, 754, 960
Hpy188III TCNNGA 6 cut(s) 122, 265, 277, 286, 329, 349
Hpy8I GTNNAC 1 cut(s) 688
HpyAV CCTTC 7 cut(s) 439, 535, 634, 854, 908, 1055, 1145
HpyCH4III ACNGT 1 cut(s) 505
HpyCH4IV ACGT 2 cut(s) 174, 684
HpyCH4V TGCA 4 cut(s) 11, 579, 634, 832
HpyF10VI GCNNNNNNNGC 7 cut(s) 24, 27, 116, 332, 567, 576, 608
HpyF3I CTNAG 3 cut(s) 61, 74, 327
HpySE526I ACGT 2 cut(s) 174, 684
Hsp92I GRCGYC 2 cut(s) 611, 955
Hsp92II CATG 4 cut(s) 11, 529, 596, 836
HspAI GCGC 1 cut(s) 611
KasI GGCGCC 1 cut(s) 610
Kpn2I TCCGGA 1 cut(s) 264
Kzo9I GATC 1 cut(s) 190
LguI GCTCTTC 2 cut(s) 889, 956
LmnI GCTCC 4 cut(s) 221, 248, 643, 1064
Lsp1109I GCAGC 4 cut(s) 14, 30, 33, 36
LweI GCATC 1 cut(s) 557
MaeI CTAG 1 cut(s) 947
MaeII ACGT 2 cut(s) 174, 684
MaeIII GTNAC 1 cut(s) 715
MalI GATC 1 cut(s) 192
MbiI CCGCTC 1 cut(s) 1067
MboI GATC 1 cut(s) 190
MhlI GDGCHC 2 cut(s) 218, 345
MluCI AATT 4 cut(s) 104, 574, 652, 1095
Mly113I GGCGCC 1 cut(s) 611
MlyI GAGTC 2 cut(s) 134, 937
MmeI TCCRAC 2 cut(s) 153, 783
Mph1103I ATGCAT 1 cut(s) 834
MroI TCCGGA 1 cut(s) 264
MroXI GAANNNNTTC 2 cut(s) 314, 587
MspA1I CMGCKG 1 cut(s) 27
MspI CCGG 5 cut(s) 144, 240, 265, 620, 1190
MspR9I CCNGG 2 cut(s) 145, 240
Mva1269I GAATGC 1 cut(s) 834
MwoI GCNNNNNNNGC 7 cut(s) 24, 27, 116, 332, 567, 576, 608
NarI GGCGCC 1 cut(s) 611
NciI CCSGG 2 cut(s) 145, 240
NcoI CCATGG 1 cut(s) 592
NdeII GATC 1 cut(s) 190
NlaIII CATG 4 cut(s) 11, 529, 596, 836
NlaIV GGNNCC 6 cut(s) 148, 244, 269, 300, 612, 690
NsiI ATGCAT 1 cut(s) 834
NspI RCATGY 1 cut(s) 529
PaeR7I CTCGAG 1 cut(s) 120
PceI AGGCCT 1 cut(s) 335
PciI ACATGT 1 cut(s) 525
PciSI GCTCTTC 2 cut(s) 889, 956
PctI GAATGC 1 cut(s) 834
PdmI GAANNNNTTC 2 cut(s) 314, 587
PfeI GAWTC 1 cut(s) 156
PflMI CCANNNNNTGG 1 cut(s) 598
PkrI GCNGC 6 cut(s) 20, 23, 26, 29, 101, 187
PleI GAGTC 2 cut(s) 133, 937
PluTI GGCGCC 1 cut(s) 614
PpsI GAGTC 2 cut(s) 133, 937
Ppu21I YACGTR 1 cut(s) 685
PscI ACATGT 1 cut(s) 525
PshAI GACNNNNGTC 1 cut(s) 260
Psp124BI GAGCTC 1 cut(s) 345
PspFI CCCAGC 1 cut(s) 302
PspN4I GGNNCC 6 cut(s) 148, 244, 269, 300, 612, 690
PspPI GGNCC 5 cut(s) 147, 267, 360, 373, 688
PstNI CAGNNNCTG 1 cut(s) 27
PvuII CAGCTG 1 cut(s) 27
RsaI GTAC 6 cut(s) 177, 515, 536, 650, 683, 775
RsaNI GTAC 6 cut(s) 176, 514, 535, 649, 682, 774
SacI GAGCTC 1 cut(s) 345
SapI GCTCTTC 2 cut(s) 889, 956
SatI GCNGC 6 cut(s) 19, 22, 25, 28, 100, 186
Sau3AI GATC 1 cut(s) 190
Sau96I GGNCC 5 cut(s) 147, 267, 360, 373, 688
SchI GAGTC 2 cut(s) 134, 937
ScrFI CCNGG 2 cut(s) 145, 240
SduI GDGCHC 2 cut(s) 218, 345
SfaNI GCATC 1 cut(s) 557
SfoI GGCGCC 1 cut(s) 612
Sfr274I CTCGAG 1 cut(s) 120
SinI GGWCC 4 cut(s) 267, 360, 373, 688
SlaI CTCGAG 1 cut(s) 120
SmlI CTYRAG 3 cut(s) 120, 284, 562
SmoI CTYRAG 3 cut(s) 120, 284, 562
Sse9I AATT 4 cut(s) 104, 574, 652, 1095
SseBI AGGCCT 1 cut(s) 335
SsiI CCGC 5 cut(s) 100, 134, 186, 233, 1067
SspDI GGCGCC 1 cut(s) 610
SspMI CTAG 1 cut(s) 947
SstI GAGCTC 1 cut(s) 345
StuI AGGCCT 1 cut(s) 335
StyD4I CCNGG 2 cut(s) 143, 238
StyI CCWWGG 1 cut(s) 592
TaaI ACNGT 1 cut(s) 505
TaiI ACGT 2 cut(s) 177, 687
TaqI TCGA 4 cut(s) 121, 276, 531, 974
TaqII GACCGA 1 cut(s) 168
TasI AATT 4 cut(s) 104, 574, 652, 1095
TatI WGTACW 1 cut(s) 648
TauI GCSGC 2 cut(s) 102, 188
TfiI GAWTC 1 cut(s) 156
TscAI CASTG 1 cut(s) 933
TseI GCWGC 4 cut(s) 18, 21, 24, 27
TspDTI ATGAA 1 cut(s) 849
TspGWI ACGGA 2 cut(s) 501, 970
TspRI CASTG 1 cut(s) 933
Van91I CCANNNNNTGG 1 cut(s) 598
VpaK11BI GGWCC 4 cut(s) 267, 360, 373, 688
XapI RAATTY 1 cut(s) 104
XceI RCATGY 1 cut(s) 529
XcmI CCANNNNNNNNNTGG 1 cut(s) 398
XhoI CTCGAG 1 cut(s) 120
XmnI GAANNNNTTC 2 cut(s) 314, 587
XspI CTAG 1 cut(s) 947
Zsp2I ATGCAT 1 cut(s) 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.