RLG00000017887

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017224
Physical Location & Seq
Forward (+)
22652116 .. 22653087
972 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017887

Sequence Viewer

Length: 972 bp
ATGGATGATCCGAGCAGCAGTGGAGTACCCGAGTCCGAAAAGCTTCTTGGAATCGCCGCCGATCTCCTCTGCGACGGCGACTTCGCTTCTTGCCGGAAATACGCTCTCTCTGCCCGCGACTACGACTCGGAAAACCCCGTCGCGGAAAGAATCCTCGCCGTCGCCGACGTTCTCCTCGCCGAAAAGAGGCGCGACCCGACCGACTGGTACCCCATTTTGCAACTGACCCGACCCGACTCCCGAAACCGCCGCCTCGTTCGGGCCCAGTTCGAGAAGCTCGCGGCGCTGTTGAACCCGGAAGACAACGGCTTACCGTTTTCCGACGAGGCGCTCGGGCTGGTCCACAAGGCGTGGGCCGCGCTGTCCGACCCGGGGTTCGGAAATGGGCCCAAGAACTGGCCGGAAAGCCCGAAACTTGAAGAGCGTTTGGCCGGAGAGACGTTCTGGACGGTCTGTCCGTACTGCTATGGCATGTTTATGTACAAGAAGGTGTTTGAGGAGTGTTGCCTGAGGTGTCAGATTTGCCGGAAGGCGTTTCACGGAGTGGCGATTAGGCCGCCGGCGCCGGAGATTTTGGTGGAGGGGAAGGAGCAGTACTATTTTACTTATGGGTGTTTTCCCATGGAGTACAATGAGGACCCAAAGAAGAGTAATGAGGACACAAAGAAGAGGCAGATGGAGGAGGGTGTTTGTGTTGTGGAGATTTCTGATGATGATGAGGAGGTGGTGGTGAAGAATGTGGGTGGAGGAGGGAAGTTTTCGAGCGAAGGGAAGGCTCCGGCGAAGAGAATGAAGGCTCCGGCTAGGCGGATGAAGGGGATGAAGACGAAAACAGTGGCGAGTAGGAGGGGTGGGATGGTGAAAGAGTTGGACTTGAATGGTGGGTGTGGAAATGGGAATGGTGAAATGGGTGATTTAAAGTTTTTTGAAGGTGAAGATGATGTCTTTGTTGGTCTTGGGGATAGTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

324

Amino Acids

35.84

Weight (kDa)

5.12

Isoelectric Point (pI)

52.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19770
malus_domestica MD15G1313800.v1.1
prunus_persica Prupe.6G198600_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0111341
rosa_laevigata RLG00000017887
rosa_multiflora Rmu_co8456405.1_g000001
rosa_roxburghii Rroxscaffold_2G00132480
rosa_rugosa Rorug02G0172800
rosa_samantha Rh2AG226000 Rh2BG237800 Rh2CG229000 Rh2DG233500
rosa_wichuraiana Rw2G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 207
AccB1I GGYRCC 2 cut(s) 207, 562
AccB7I CCANNNNNTGG 1 cut(s) 396
AccII CGCG 5 cut(s) 117, 143, 192, 281, 359
AciI CCGC 9 cut(s) 57, 115, 143, 247, 250, 281, 357, 557, 808
AclWI GGATC 1 cut(s) 2
AcoI YGGCCR 2 cut(s) 398, 429
AcyI GRCGYC 1 cut(s) 563
AdeI CACNNNGTG 1 cut(s) 544
AfaI GTAC 6 cut(s) 27, 209, 461, 482, 596, 629
AfiI CCNNNNNNNGG 6 cut(s) 142, 186, 259, 372, 377, 396
AgsI TTSAA 4 cut(s) 292, 419, 877, 929
AhdI GACNNNNNGTC 1 cut(s) 453
AjuI GAANNNNNNNTTGG 2 cut(s) 30, 62
AluBI AGCT 2 cut(s) 43, 277
AluI AGCT 2 cut(s) 43, 277
Alw26I GTCTC 1 cut(s) 431
AlwI GGATC 1 cut(s) 2
Ama87I CYCGRG 3 cut(s) 29, 332, 370
AoxI GGCC 6 cut(s) 261, 354, 386, 398, 429, 554
ApaI GGGCCC 2 cut(s) 265, 390
ApeKI GCWGC 1 cut(s) 15
ArsI GACNNNNNNTTYG 4 cut(s) 65, 97, 359, 391
Asp700I GAANNNNTTC 1 cut(s) 42
Asp718I GGTACC 1 cut(s) 207
AspLEI GCGC 5 cut(s) 192, 286, 331, 361, 565
AspS9I GGNCC 7 cut(s) 261, 262, 340, 354, 386, 387, 637
AsuC2I CCSGG 3 cut(s) 296, 371, 372
AsuHPI GGTGA 5 cut(s) 742, 871, 914, 923, 944
AvaI CYCGRG 3 cut(s) 29, 332, 370
AvaII GGWCC 2 cut(s) 340, 637
AxyI CCTNAGG 1 cut(s) 509
BaeGI GKGCMC 2 cut(s) 265, 390
BanI GGYRCC 2 cut(s) 207, 562
BanII GRGCYC 2 cut(s) 265, 390
BarI GAAGNNNNNNTAC 2 cut(s) 578, 610
BbsI GAAGAC 2 cut(s) 306, 830
BbvI GCAGC 1 cut(s) 27
BccI CCATC 2 cut(s) 670, 850
BceAI ACGGC 3 cut(s) 91, 143, 322
BcnI CCSGG 3 cut(s) 296, 371, 372
BcoDI GTCTC 1 cut(s) 431
BfaI CTAG 1 cut(s) 804
BfoI RGCGCY 3 cut(s) 287, 332, 566
BisI GCNGC 6 cut(s) 16, 57, 250, 282, 357, 557
BlsI GCNGC 6 cut(s) 17, 58, 251, 283, 358, 558
BmcAI AGTACT 1 cut(s) 596
Bme1390I CCNGG 3 cut(s) 296, 371, 372
Bme18I GGWCC 2 cut(s) 340, 637
BmeRI GACNNNNNGTC 1 cut(s) 453
BmeT110I CYCGRG 3 cut(s) 29, 332, 370
BmgT120I GGNCC 7 cut(s) 261, 262, 340, 354, 386, 387, 637
BmiI GGNNCC 7 cut(s) 209, 263, 388, 564, 639, 777, 798
BmrFI CCNGG 3 cut(s) 296, 371, 372
BmrI ACTGGG 1 cut(s) 259
BmuI ACTGGG 1 cut(s) 259
BpiI GAAGAC 2 cut(s) 306, 830
BpuMI CCSGG 3 cut(s) 296, 371, 372
BsaHI GRCGYC 1 cut(s) 563
BsaJI CCNNGG 3 cut(s) 370, 371, 621
Bsc4I CCNNNNNNNGG 6 cut(s) 142, 186, 259, 372, 377, 396
Bse118I RCCGGY 1 cut(s) 559
Bse1I ACTGG 3 cut(s) 209, 265, 401
Bse21I CCTNAGG 1 cut(s) 509
BseDI CCNNGG 3 cut(s) 370, 371, 621
BseGI GGATG 4 cut(s) 10, 816, 825, 861
BseLI CCNNNNNNNGG 6 cut(s) 142, 186, 259, 372, 377, 396
BseMII CTCAG 1 cut(s) 500
BseNI ACTGG 3 cut(s) 209, 265, 401
BseRI GAGGAG 6 cut(s) 56, 164, 512, 695, 734, 762
BseSI GKGCMC 2 cut(s) 265, 390
BseXI GCAGC 1 cut(s) 27
Bsh1236I CGCG 5 cut(s) 117, 143, 192, 281, 359
Bsh1285I CGRYCG 1 cut(s) 201
BshFI GGCC 6 cut(s) 263, 356, 388, 400, 431, 556
BshNI GGYRCC 2 cut(s) 207, 562
BsiEI CGRYCG 1 cut(s) 201
BsiHKCI CYCGRG 3 cut(s) 29, 332, 370
BslI CCNNNNNNNGG 6 cut(s) 142, 186, 259, 372, 377, 396
BsmAI GTCTC 1 cut(s) 431
BsmBI CGTCTC 1 cut(s) 431
BsnI GGCC 6 cut(s) 263, 356, 388, 400, 431, 556
BsoBI CYCGRG 3 cut(s) 29, 332, 370
Bsp120I GGGCCC 2 cut(s) 261, 386
Bsp1286I GDGCHC 2 cut(s) 265, 390
Bsp1407I TGTACA 1 cut(s) 480
Bsp143I GATC 2 cut(s) 7, 61
Bsp19I CCATGG 1 cut(s) 621
BspACI CCGC 9 cut(s) 57, 115, 143, 247, 250, 281, 357, 557, 808
BspANI GGCC 6 cut(s) 263, 356, 388, 400, 431, 556
BspCNI CTCAG 1 cut(s) 501
BspFNI CGCG 5 cut(s) 117, 143, 192, 281, 359
BspLI GGNNCC 7 cut(s) 209, 263, 388, 564, 639, 777, 798
BspPI GGATC 1 cut(s) 2
BspQI GCTCTTC 1 cut(s) 414
BspT107I GGYRCC 2 cut(s) 207, 562
BsrFI RCCGGY 1 cut(s) 559
BsrGI TGTACA 1 cut(s) 480
BsrI ACTGG 3 cut(s) 209, 265, 401
BssAI RCCGGY 1 cut(s) 559
BssECI CCNNGG 3 cut(s) 370, 371, 621
BssMI GATC 2 cut(s) 7, 61
BssNI GRCGYC 1 cut(s) 563
BssT1I CCWWGG 1 cut(s) 621
Bst4CI ACNGT 3 cut(s) 315, 451, 835
Bst6I CTCTTC 4 cut(s) 414, 641, 662, 779
BstACI GRCGYC 1 cut(s) 563
BstAUI TGTACA 1 cut(s) 480
BstC8I GCNNGC 3 cut(s) 115, 279, 561
BstDEI CTNAG 1 cut(s) 509
BstDSI CCRYGG 1 cut(s) 621
BstF5I GGATG 4 cut(s) 10, 816, 825, 861
BstFNI CGCG 5 cut(s) 117, 143, 192, 281, 359
BstH2I RGCGCY 3 cut(s) 287, 332, 566
BstHHI GCGC 5 cut(s) 192, 286, 331, 361, 565
BstKTI GATC 2 cut(s) 10, 64
BstMAI GTCTC 1 cut(s) 431
BstMBI GATC 2 cut(s) 7, 61
BstMCI CGRYCG 1 cut(s) 201
BstMWI GCNNNNNNNGC 4 cut(s) 110, 283, 356, 562
BstNSI RCATGY 1 cut(s) 475
BstSCI CCNGG 3 cut(s) 294, 369, 370
BstSLI GKGCMC 2 cut(s) 265, 390
BstUI CGCG 5 cut(s) 117, 143, 192, 281, 359
BstV1I GCAGC 1 cut(s) 27
BstV2I GAAGAC 2 cut(s) 306, 830
Bsu36I CCTNAGG 1 cut(s) 509
BsuRI GGCC 6 cut(s) 263, 356, 388, 400, 431, 556
BtgI CCRYGG 1 cut(s) 621
BtsCI GGATG 4 cut(s) 10, 816, 825, 861
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 2 cut(s) 25, 840
Cac8I GCNNGC 3 cut(s) 115, 279, 561
CfoI GCGC 5 cut(s) 192, 286, 331, 361, 565
Cfr10I RCCGGY 1 cut(s) 559
Cfr13I GGNCC 7 cut(s) 261, 262, 340, 354, 386, 387, 637
Cfr9I CCCGGG 1 cut(s) 370
Csp6I GTAC 6 cut(s) 26, 208, 460, 481, 595, 628
CviAII CATG 3 cut(s) 472, 622, 969
CviQI GTAC 6 cut(s) 26, 208, 460, 481, 595, 628
DdeI CTNAG 1 cut(s) 509
DinI GGCGCC 1 cut(s) 564
DpnI GATC 2 cut(s) 9, 63
DpnII GATC 2 cut(s) 7, 61
DraI TTTAAA 1 cut(s) 918
DraIII CACNNNGTG 1 cut(s) 544
DriI GACNNNNNGTC 1 cut(s) 453
EaeI YGGCCR 2 cut(s) 398, 429
Eam1104I CTCTTC 4 cut(s) 414, 641, 662, 779
Eam1105I GACNNNNNGTC 1 cut(s) 453
EarI CTCTTC 4 cut(s) 414, 641, 662, 779
EciI GGCGGA 1 cut(s) 823
Eco130I CCWWGG 1 cut(s) 621
Eco24I GRGCYC 2 cut(s) 265, 390
Eco47I GGWCC 2 cut(s) 340, 637
Eco81I CCTNAGG 1 cut(s) 509
Eco88I CYCGRG 3 cut(s) 29, 332, 370
EcoO109I RGGNCCY 1 cut(s) 637
EcoT14I CCWWGG 1 cut(s) 621
EcoT38I GRGCYC 2 cut(s) 265, 390
EgeI GGCGCC 1 cut(s) 564
EheI GGCGCC 1 cut(s) 564
ErhI CCWWGG 1 cut(s) 621
Esp3I CGTCTC 1 cut(s) 431
FaeI CATG 3 cut(s) 475, 625, 972
FaiI YATR 6 cut(s) 468, 473, 479, 609, 623, 970
FatI CATG 3 cut(s) 471, 621, 968
FauI CCCGC 1 cut(s) 122
Fnu4HI GCNGC 6 cut(s) 16, 57, 250, 282, 357, 557
FokI GGATG 4 cut(s) 17, 823, 832, 868
FriOI GRGCYC 2 cut(s) 265, 390
Fsp4HI GCNGC 6 cut(s) 16, 57, 250, 282, 357, 557
FspBI CTAG 1 cut(s) 804
GlaI GCGC 5 cut(s) 191, 285, 330, 360, 564
GluI GCNGC 6 cut(s) 16, 57, 250, 282, 357, 557
HaeII RGCGCY 3 cut(s) 287, 332, 566
HaeIII GGCC 6 cut(s) 263, 356, 388, 400, 431, 556
HhaI GCGC 5 cut(s) 192, 286, 331, 361, 565
Hin1I GRCGYC 1 cut(s) 563
Hin1II CATG 3 cut(s) 475, 625, 972
Hin6I GCGC 5 cut(s) 190, 284, 329, 359, 563
HinP1I GCGC 5 cut(s) 190, 284, 329, 359, 563
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 5 cut(s) 32, 51, 125, 150, 236
HphI GGTGA 5 cut(s) 742, 871, 914, 923, 944
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 8 cut(s) 12, 37, 130, 322, 367, 380, 519, 709
Hpy188III TCNNGA 3 cut(s) 240, 271, 445
Hpy8I GTNNAC 1 cut(s) 343
Hpy99I CGWCG 5 cut(s) 77, 143, 164, 170, 326
HpyAV CCTTC 8 cut(s) 481, 523, 580, 761, 766, 787, 808, 923
HpyCH4III ACNGT 3 cut(s) 315, 451, 835
HpyCH4IV ACGT 2 cut(s) 168, 440
HpyCH4V TGCA 1 cut(s) 220
HpyF10VI GCNNNNNNNGC 4 cut(s) 110, 283, 356, 562
HpyF3I CTNAG 1 cut(s) 509
HpySE526I ACGT 2 cut(s) 168, 440
Hsp92I GRCGYC 1 cut(s) 563
Hsp92II CATG 3 cut(s) 475, 625, 972
HspAI GCGC 5 cut(s) 190, 284, 329, 359, 563
KasI GGCGCC 1 cut(s) 562
KpnI GGTACC 1 cut(s) 211
KroI GCCGGC 1 cut(s) 559
KroNI GCCGGC 1 cut(s) 561
Kzo9I GATC 2 cut(s) 7, 61
LguI GCTCTTC 1 cut(s) 414
LmnI GCTCC 3 cut(s) 589, 781, 802
Lsp1109I GCAGC 1 cut(s) 27
MaeI CTAG 1 cut(s) 804
MaeII ACGT 2 cut(s) 168, 440
MalI GATC 2 cut(s) 9, 63
MboI GATC 2 cut(s) 7, 61
MboII GAAGA 8 cut(s) 311, 431, 658, 679, 745, 796, 835, 947
MhlI GDGCHC 2 cut(s) 265, 390
Mly113I GGCGCC 1 cut(s) 563
MlyI GAGTC 3 cut(s) 41, 119, 230
MmeI TCCRAC 3 cut(s) 345, 390, 849
MreI CGCCGGCG 1 cut(s) 559
MroNI GCCGGC 1 cut(s) 559
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 1 cut(s) 917
MslI CAYNNNNRTG 1 cut(s) 476
MspR9I CCNGG 3 cut(s) 296, 371, 372
MvnI CGCG 5 cut(s) 117, 143, 192, 281, 359
MwoI GCNNNNNNNGC 4 cut(s) 110, 283, 356, 562
NaeI GCCGGC 1 cut(s) 561
NarI GGCGCC 1 cut(s) 563
NciI CCSGG 3 cut(s) 296, 371, 372
NcoI CCATGG 1 cut(s) 621
NdeII GATC 2 cut(s) 7, 61
NgoMIV GCCGGC 1 cut(s) 559
NlaIII CATG 3 cut(s) 475, 625, 972
NlaIV GGNNCC 7 cut(s) 209, 263, 388, 564, 639, 777, 798
NspI RCATGY 1 cut(s) 475
PciSI GCTCTTC 1 cut(s) 414
PcsI WCGNNNNNNNCGW 2 cut(s) 162, 455
PdiI GCCGGC 1 cut(s) 561
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 2 cut(s) 51, 150
PflMI CCANNNNNTGG 1 cut(s) 396
PkrI GCNGC 6 cut(s) 17, 58, 251, 283, 358, 558
PleI GAGTC 3 cut(s) 40, 119, 230
PluTI GGCGCC 1 cut(s) 566
PpsI GAGTC 3 cut(s) 40, 119, 230
PpuMI RGGWCCY 1 cut(s) 637
Psp5II RGGWCCY 1 cut(s) 637
PspN4I GGNNCC 7 cut(s) 209, 263, 388, 564, 639, 777, 798
PspOMI GGGCCC 2 cut(s) 261, 386
PspPI GGNCC 7 cut(s) 261, 262, 340, 354, 386, 387, 637
PspPPI RGGWCCY 1 cut(s) 637
RsaI GTAC 6 cut(s) 27, 209, 461, 482, 596, 629
RsaNI GTAC 6 cut(s) 26, 208, 460, 481, 595, 628
RseI CAYNNNNRTG 1 cut(s) 476
SapI GCTCTTC 1 cut(s) 414
SaqAI TTAA 1 cut(s) 917
SatI GCNGC 6 cut(s) 16, 57, 250, 282, 357, 557
Sau3AI GATC 2 cut(s) 7, 61
Sau96I GGNCC 7 cut(s) 261, 262, 340, 354, 386, 387, 637
ScaI AGTACT 1 cut(s) 596
SchI GAGTC 3 cut(s) 41, 119, 230
ScrFI CCNGG 3 cut(s) 296, 371, 372
SduI GDGCHC 2 cut(s) 265, 390
SetI ASST 8 cut(s) 45, 171, 279, 443, 492, 515, 726, 934
SfoI GGCGCC 1 cut(s) 564
SgrAI CRCCGGYG 1 cut(s) 559
SinI GGWCC 2 cut(s) 340, 637
SmaI CCCGGG 1 cut(s) 372
SmiMI CAYNNNNRTG 1 cut(s) 476
SsiI CCGC 9 cut(s) 57, 115, 143, 247, 250, 281, 357, 557, 808
SspDI GGCGCC 1 cut(s) 562
SspMI CTAG 1 cut(s) 804
StyD4I CCNGG 3 cut(s) 294, 369, 370
StyI CCWWGG 1 cut(s) 621
TaaI ACNGT 3 cut(s) 315, 451, 835
TaiI ACGT 2 cut(s) 171, 443
TaqI TCGA 2 cut(s) 270, 761
TaqII GACCGA 1 cut(s) 215
TatI WGTACW 3 cut(s) 480, 594, 627
TauI GCSGC 5 cut(s) 59, 252, 284, 359, 559
TfiI GAWTC 2 cut(s) 51, 150
Tru1I TTAA 1 cut(s) 917
Tru9I TTAA 1 cut(s) 917
TscAI CASTG 2 cut(s) 25, 840
TseI GCWGC 1 cut(s) 15
TspDTI ATGAA 3 cut(s) 806, 827, 836
TspGWI ACGGA 2 cut(s) 447, 555
TspMI CCCGGG 1 cut(s) 370
TspRI CASTG 2 cut(s) 25, 840
Van91I CCANNNNNTGG 1 cut(s) 396
VpaK11BI GGWCC 2 cut(s) 340, 637
XceI RCATGY 1 cut(s) 475
XmaI CCCGGG 1 cut(s) 370
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 1 cut(s) 804
ZrmI AGTACT 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.