MD15G1313800.v1.1

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0017224
Physical Location & Seq
Forward (+)
31736276 .. 31737418
1143 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1313800.v1.1.491

Sequence Viewer

Length: 1143 bp
ATGGAACATGCAAAATGCAGCAGCGGCAGCGGGTCGTCCAAGGCCCAAACACTTCTCAACCGCTCTGCCCATTGCCTCAGCCGCCGAGATTTCTCTACTTGCCGCAAGCTCGCTCTTCAAGCTCGAGAATCCGACCCCTACAACTCCGCCCCCGACCAAATCCTTGCCGTCGCCGACGTTCTGCTCGCCGCCAACCGCCAAAACCCACCTGACTGGTACTCCGTTCTTCAAATACCCCGACCCGGACCCGCAAACCCGACTCTCATCCGGACCCAGTTCGAGAAACTCAGCACCCTCTTGGAACCCGGCAAGAACCGGTTCGCTTTCTCTCAGGAGGCCATGTGGCTCATCAAGAAAGCCTGGTCCGTACTATCGGACCCGGAGAAGAAAACCCATTTCGAAAACGGGTCTGAGGAAGGGAAAGAAAGCGGAAAACAGAGAGAGGAGAGGGGAGGAATTGTGGGTAATGGGAAAAATGGCGGAGGGTATAATGGGGGAAAGACATTCTGGACTGTGTGTCCGTACTGCTATTATATGTTTGAGTACGAGAAGGTGTATGCAGATTGTTGCTTGAGGTGCCAGAATTGCAGGAAAGGTTTCCATGGAGTGGCGATAAAGCCGCCGTCAGGGGATGTGATAGTGGAGGGACAGGAGCAGTACAGTTTCTGTTTTGGCTACTTTCAAATGGGGTATATGGACCCGAATTCGAAGATGGAATCGGAGGTAGTTGACAAGAAAGACGAGAATGTGGTGGTGATATCCGATGATGATTCCGATGAGGACGATTTCGGTGATGGTAATGTGGGTTTTGAGGGAATGCATGAGGAAGTGGTGAGGAGTGGGAGTCATGGAGCTGAAGGGAAGACGCCGGTGAAGAGGGTGAAGATTCCGGCTGGGCGGATAAAGAGCACGAAATCAAAGTCCGTGGCGAGGAATACGAAGAAGATAATGGGGAATGGGATGAGGAGTAGGAGGATTGAGTTGGAGGATGTTGAGAGACTGAAATGTGAGGACATGGAGGTTGAAGAGGGAAATGGAGTTGGTGAGGGAGAGGGGGGTAGTGGGAGTGGTGGAACGGGAGGGATAGAGTTTTTTGAAGGAGAAGATGATATCTTTGTTGGAATTGGGGATAGTCCCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

381

Amino Acids

41.77

Weight (kDa)

5.35

Isoelectric Point (pI)

36.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 71 - 133 7.3e-08 DnaJ domain
Zn_ribbon_20 PF23551 169 - 203 1.1e-06 Zinc beta-ribbon domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19770
malus_domestica MD15G1313800.v1.1
prunus_persica Prupe.6G198600_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0111341
rosa_laevigata RLG00000017887
rosa_multiflora Rmu_co8456405.1_g000001
rosa_roxburghii Rroxscaffold_2G00132480
rosa_rugosa Rorug02G0172800
rosa_samantha Rh2AG226000 Rh2BG237800 Rh2CG229000 Rh2DG233500
rosa_wichuraiana Rw2G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 576
AccB7I CCANNNNNTGG 1 cut(s) 607
AccBSI CCGCTC 1 cut(s) 63
AccIII TCCGGA 1 cut(s) 267
AcsI RAATTY 1 cut(s) 703
AcuI CTGAAG 1 cut(s) 876
AcyI GRCGYC 1 cut(s) 866
AfaI GTAC 5 cut(s) 218, 369, 524, 545, 659
AfiI CCNNNNNNNGG 4 cut(s) 242, 607, 626, 930
AgeI ACCGGT 1 cut(s) 315
AgsI TTSAA 5 cut(s) 119, 230, 683, 1025, 1097
AhdI GACNNNNNGTC 1 cut(s) 516
AjnI CCWGG 1 cut(s) 359
AluBI AGCT 3 cut(s) 109, 122, 854
AluI AGCT 3 cut(s) 109, 122, 854
Alw21I GWGCWC 1 cut(s) 911
Alw26I GTCTC 1 cut(s) 991
AlwNI CAGNNNCTG 1 cut(s) 666
Ama87I CYCGRG 1 cut(s) 123
Aor13HI TCCGGA 1 cut(s) 267
AoxI GGCC 2 cut(s) 42, 336
ApeKI GCWGC 3 cut(s) 18, 21, 27
ApoI RAATTY 1 cut(s) 703
ArsI GACNNNNNNTTYG 2 cut(s) 905, 937
AsiGI ACCGGT 1 cut(s) 315
Asp700I GAANNNNTTC 2 cut(s) 317, 596
AspS9I GGNCC 6 cut(s) 43, 245, 270, 363, 376, 697
AsuC2I CCSGG 3 cut(s) 243, 306, 380
AsuHPI GGTGA 6 cut(s) 766, 803, 844, 883, 892, 1055
AsuII TTCGAA 2 cut(s) 399, 707
AvaI CYCGRG 1 cut(s) 123
AvaII GGWCC 5 cut(s) 245, 270, 363, 376, 697
BanI GGYRCC 1 cut(s) 576
BbsI GAAGAC 1 cut(s) 869
Bbv12I GWGCWC 1 cut(s) 911
BbvCI CCTCAGC 1 cut(s) 77
BbvI GCAGC 3 cut(s) 30, 33, 39
BccI CCATC 2 cut(s) 706, 788
BceAI ACGGC 2 cut(s) 152, 607
BciT130I CCWGG 1 cut(s) 361
BcnI CCSGG 3 cut(s) 243, 306, 380
BcoDI GTCTC 1 cut(s) 991
BisI GCNGC 8 cut(s) 19, 22, 25, 28, 82, 103, 189, 620
BlsI GCNGC 8 cut(s) 20, 23, 26, 29, 83, 104, 190, 621
Bme1390I CCNGG 4 cut(s) 243, 306, 361, 380
Bme18I GGWCC 5 cut(s) 245, 270, 363, 376, 697
BmeRI GACNNNNNGTC 1 cut(s) 516
BmeT110I CYCGRG 1 cut(s) 123
BmgT120I GGNCC 6 cut(s) 43, 245, 270, 363, 376, 697
BmiI GGNNCC 6 cut(s) 247, 272, 303, 378, 578, 699
BmrFI CCNGG 4 cut(s) 243, 306, 361, 380
BmrI ACTGGG 1 cut(s) 268
BmuI ACTGGG 1 cut(s) 268
BpiI GAAGAC 1 cut(s) 869
Bpu10I CCTNAGC 1 cut(s) 77
Bpu14I TTCGAA 2 cut(s) 399, 707
BpuEI CTTGAG 1 cut(s) 592
BpuMI CCSGG 3 cut(s) 243, 306, 380
BsaHI GRCGYC 1 cut(s) 866
BsaJI CCNNGG 3 cut(s) 39, 601, 924
BsaWI WCCGGW 2 cut(s) 267, 315
BsaXI ACNNNNNCTCC 8 cut(s) 203, 233, 326, 356, 444, 474, 829, 859
Bsc4I CCNNNNNNNGG 4 cut(s) 242, 607, 626, 930
Bse118I RCCGGY 2 cut(s) 315, 868
Bse1I ACTGG 2 cut(s) 218, 274
Bse3DI GCAATG 1 cut(s) 70
BseAI TCCGGA 1 cut(s) 267
BseBI CCWGG 1 cut(s) 361
BseDI CCNNGG 3 cut(s) 39, 601, 924
BseGI GGATG 4 cut(s) 264, 637, 966, 994
BseLI CCNNNNNNNGG 4 cut(s) 242, 607, 626, 930
BseMI GCAATG 1 cut(s) 70
BseMII CTCAG 4 cut(s) 91, 301, 344, 402
BseNI ACTGG 2 cut(s) 218, 274
BseRI GAGGAG 3 cut(s) 458, 850, 979
BseXI GCAGC 3 cut(s) 30, 33, 39
BseYI CCCAGC 1 cut(s) 893
BshFI GGCC 2 cut(s) 44, 338
BshNI GGYRCC 1 cut(s) 576
BshTI ACCGGT 1 cut(s) 315
BsiHKAI GWGCWC 1 cut(s) 911
BsiHKCI CYCGRG 1 cut(s) 123
BsiSI CCGG 7 cut(s) 243, 268, 306, 316, 380, 869, 890
BslFI GGGAC 2 cut(s) 660, 1119
BslI CCNNNNNNNGG 4 cut(s) 242, 607, 626, 930
BsmAI GTCTC 1 cut(s) 991
BsmFI GGGAC 2 cut(s) 660, 1119
BsmI GAATGC 1 cut(s) 822
BsnI GGCC 2 cut(s) 44, 338
BsoBI CYCGRG 1 cut(s) 123
Bsp119I TTCGAA 2 cut(s) 399, 707
Bsp1286I GDGCHC 1 cut(s) 911
Bsp13I TCCGGA 1 cut(s) 267
Bsp19I CCATGG 1 cut(s) 601
BspANI GGCC 2 cut(s) 44, 338
BspCNI CTCAG 4 cut(s) 90, 300, 343, 403
BspEI TCCGGA 1 cut(s) 267
BspLI GGNNCC 6 cut(s) 247, 272, 303, 378, 578, 699
BspQI GCTCTTC 1 cut(s) 120
BspT104I TTCGAA 2 cut(s) 399, 707
BspT107I GGYRCC 1 cut(s) 576
BsrBI CCGCTC 1 cut(s) 63
BsrDI GCAATG 1 cut(s) 70
BsrFI RCCGGY 2 cut(s) 315, 868
BsrI ACTGG 2 cut(s) 218, 274
BssAI RCCGGY 2 cut(s) 315, 868
BssECI CCNNGG 3 cut(s) 39, 601, 924
BssNI GRCGYC 1 cut(s) 866
BssT1I CCWWGG 2 cut(s) 39, 601
Bst2UI CCWGG 1 cut(s) 361
Bst4CI ACNGT 2 cut(s) 514, 662
Bst6I CTCTTC 3 cut(s) 120, 869, 1020
BstACI GRCGYC 1 cut(s) 866
BstBI TTCGAA 2 cut(s) 399, 707
BstC8I GCNNGC 3 cut(s) 107, 111, 186
BstDEI CTNAG 4 cut(s) 77, 287, 330, 411
BstDSI CCRYGG 2 cut(s) 601, 924
BstF5I GGATG 4 cut(s) 264, 637, 966, 994
BstMAI GTCTC 1 cut(s) 991
BstMWI GCNNNNNNNGC 6 cut(s) 24, 27, 81, 119, 576, 585
BstNI CCWGG 1 cut(s) 361
BstNSI RCATGY 1 cut(s) 11
BstSCI CCNGG 4 cut(s) 241, 304, 359, 378
BstV1I GCAGC 3 cut(s) 30, 33, 39
BstV2I GAAGAC 1 cut(s) 869
BstXI CCANNNNNNTGG 1 cut(s) 213
BsuRI GGCC 2 cut(s) 44, 338
BtgI CCRYGG 2 cut(s) 601, 924
BtsCI GGATG 4 cut(s) 264, 637, 966, 994
Cac8I GCNNGC 3 cut(s) 107, 111, 186
CaiI CAGNNNCTG 1 cut(s) 666
Cfr10I RCCGGY 2 cut(s) 315, 868
Cfr13I GGNCC 6 cut(s) 43, 245, 270, 363, 376, 697
CseI GACGC 1 cut(s) 874
Csp6I GTAC 5 cut(s) 217, 368, 523, 544, 658
CspAI ACCGGT 1 cut(s) 315
CspCI CAANNNNNGTGG 2 cut(s) 906, 941
CviAII CATG 6 cut(s) 8, 340, 602, 821, 848, 1015
CviQI GTAC 5 cut(s) 217, 368, 523, 544, 658
DdeI CTNAG 4 cut(s) 77, 287, 330, 411
DriI GACNNNNNGTC 1 cut(s) 516
Eam1104I CTCTTC 3 cut(s) 120, 869, 1020
Eam1105I GACNNNNNGTC 1 cut(s) 516
EarI CTCTTC 3 cut(s) 120, 869, 1020
EciI GGCGGA 3 cut(s) 136, 495, 913
Eco130I CCWWGG 2 cut(s) 39, 601
Eco32I GATATC 2 cut(s) 759, 1111
Eco47I GGWCC 5 cut(s) 245, 270, 363, 376, 697
Eco57I CTGAAG 1 cut(s) 876
Eco88I CYCGRG 1 cut(s) 123
EcoRI GAATTC 1 cut(s) 703
EcoRII CCWGG 1 cut(s) 359
EcoRV GATATC 2 cut(s) 759, 1111
EcoT14I CCWWGG 2 cut(s) 39, 601
EcoT22I ATGCAT 1 cut(s) 822
ErhI CCWWGG 2 cut(s) 39, 601
FaeI CATG 6 cut(s) 11, 343, 605, 824, 851, 1018
FaqI GGGAC 2 cut(s) 660, 1119
FatI CATG 6 cut(s) 7, 339, 601, 820, 847, 1014
FauI CCCGC 2 cut(s) 23, 256
FauNDI CATATG 1 cut(s) 1139
Fnu4HI GCNGC 8 cut(s) 19, 22, 25, 28, 82, 103, 189, 620
FokI GGATG 4 cut(s) 251, 644, 973, 1001
Fsp4HI GCNGC 8 cut(s) 19, 22, 25, 28, 82, 103, 189, 620
GluI GCNGC 8 cut(s) 19, 22, 25, 28, 82, 103, 189, 620
GsaI CCCAGC 1 cut(s) 897
HaeIII GGCC 2 cut(s) 44, 338
HapII CCGG 7 cut(s) 243, 268, 306, 316, 380, 869, 890
HgaI GACGC 1 cut(s) 874
Hin1I GRCGYC 1 cut(s) 866
Hin1II CATG 6 cut(s) 11, 343, 605, 824, 851, 1018
HincII GTYRAC 1 cut(s) 730
HindII GTYRAC 1 cut(s) 730
HinfI GANTC 6 cut(s) 128, 259, 716, 770, 844, 886
HpaII CCGG 7 cut(s) 243, 268, 306, 316, 380, 869, 890
HphI GGTGA 6 cut(s) 766, 803, 844, 883, 892, 1055
Hpy166II GTNNAC 1 cut(s) 730
Hpy188I TCNGA 6 cut(s) 133, 376, 412, 721, 763, 775
Hpy188III TCNNGA 6 cut(s) 125, 268, 280, 332, 352, 508
Hpy8I GTNNAC 1 cut(s) 730
Hpy99I CGWCG 2 cut(s) 173, 179
HpyAV CCTTC 4 cut(s) 410, 544, 851, 1091
HpyCH4III ACNGT 2 cut(s) 514, 662
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 5 cut(s) 11, 18, 560, 588, 820
HpyF10VI GCNNNNNNNGC 6 cut(s) 24, 27, 81, 119, 576, 585
HpyF3I CTNAG 4 cut(s) 77, 287, 330, 411
HpySE526I ACGT 1 cut(s) 177
Hsp92I GRCGYC 1 cut(s) 866
Hsp92II CATG 6 cut(s) 11, 343, 605, 824, 851, 1018
Kpn2I TCCGGA 1 cut(s) 267
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 2 cut(s) 652, 851
Lsp1109I GCAGC 3 cut(s) 30, 33, 39
MaeII ACGT 1 cut(s) 177
MbiI CCGCTC 1 cut(s) 63
MhlI GDGCHC 1 cut(s) 911
MluCI AATT 4 cut(s) 456, 583, 703, 1122
MlyI GAGTC 2 cut(s) 253, 853
MmeI TCCRAC 3 cut(s) 156, 963, 1099
Mph1103I ATGCAT 1 cut(s) 822
MroI TCCGGA 1 cut(s) 267
MroXI GAANNNNTTC 2 cut(s) 317, 596
MspA1I CMGCKG 2 cut(s) 24, 30
MspI CCGG 7 cut(s) 243, 268, 306, 316, 380, 869, 890
MspR9I CCNGG 4 cut(s) 243, 306, 361, 380
Mva1269I GAATGC 1 cut(s) 822
MvaI CCWGG 1 cut(s) 361
MwoI GCNNNNNNNGC 6 cut(s) 24, 27, 81, 119, 576, 585
NciI CCSGG 3 cut(s) 243, 306, 380
NcoI CCATGG 1 cut(s) 601
NdeI CATATG 1 cut(s) 1139
NlaIII CATG 6 cut(s) 11, 343, 605, 824, 851, 1018
NlaIV GGNNCC 6 cut(s) 247, 272, 303, 378, 578, 699
NmeAIII GCCGAG 1 cut(s) 110
NsiI ATGCAT 1 cut(s) 822
NspI RCATGY 1 cut(s) 11
NspV TTCGAA 2 cut(s) 399, 707
PaeR7I CTCGAG 1 cut(s) 123
PciSI GCTCTTC 1 cut(s) 120
PctI GAATGC 1 cut(s) 822
PdmI GAANNNNTTC 2 cut(s) 317, 596
PfeI GAWTC 4 cut(s) 128, 716, 770, 886
PflMI CCANNNNNTGG 1 cut(s) 607
PinAI ACCGGT 1 cut(s) 315
PkrI GCNGC 8 cut(s) 20, 23, 26, 29, 83, 104, 190, 621
PleI GAGTC 2 cut(s) 253, 852
PpsI GAGTC 2 cut(s) 253, 852
Psp6I CCWGG 1 cut(s) 359
PspFI CCCAGC 1 cut(s) 893
PspGI CCWGG 1 cut(s) 359
PspN4I GGNNCC 6 cut(s) 247, 272, 303, 378, 578, 699
PspPI GGNCC 6 cut(s) 43, 245, 270, 363, 376, 697
PstNI CAGNNNCTG 1 cut(s) 666
RsaI GTAC 5 cut(s) 218, 369, 524, 545, 659
RsaNI GTAC 5 cut(s) 217, 368, 523, 544, 658
SapI GCTCTTC 1 cut(s) 120
SatI GCNGC 8 cut(s) 19, 22, 25, 28, 82, 103, 189, 620
Sau96I GGNCC 6 cut(s) 43, 245, 270, 363, 376, 697
SchI GAGTC 2 cut(s) 253, 853
ScrFI CCNGG 4 cut(s) 243, 306, 361, 380
SduI GDGCHC 1 cut(s) 911
Sfr274I CTCGAG 1 cut(s) 123
SfuI TTCGAA 2 cut(s) 399, 707
SgrAI CRCCGGYG 1 cut(s) 868
SinI GGWCC 5 cut(s) 245, 270, 363, 376, 697
SlaI CTCGAG 1 cut(s) 123
SmlI CTYRAG 2 cut(s) 123, 571
SmoI CTYRAG 2 cut(s) 123, 571
Sse9I AATT 4 cut(s) 456, 583, 703, 1122
StyD4I CCNGG 4 cut(s) 241, 304, 359, 378
StyI CCWWGG 2 cut(s) 39, 601
TaaI ACNGT 2 cut(s) 514, 662
TaiI ACGT 1 cut(s) 180
TaqI TCGA 4 cut(s) 124, 279, 399, 707
TasI AATT 4 cut(s) 456, 583, 703, 1122
TatI WGTACW 1 cut(s) 657
TauI GCSGC 5 cut(s) 27, 84, 105, 191, 622
TfiI GAWTC 4 cut(s) 128, 716, 770, 886
TseI GCWGC 3 cut(s) 18, 21, 27
TspGWI ACGGA 4 cut(s) 211, 355, 510, 913
Van91I CCANNNNNTGG 1 cut(s) 607
VpaK11BI GGWCC 5 cut(s) 245, 270, 363, 376, 697
XapI RAATTY 1 cut(s) 703
XceI RCATGY 1 cut(s) 11
XhoI CTCGAG 1 cut(s) 123
XmnI GAANNNNTTC 2 cut(s) 317, 596
Zsp2I ATGCAT 1 cut(s) 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.