Rmu_co8456405.1_g000001

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8456405.1
OG0017224
Physical Location & Seq
Reverse (-)
475 .. 1395
921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8456405.1_g000001.1.cds

Sequence Viewer

Length: 921 bp
atggataatccgagcagcagtggcgtacccgagtccgaaaagcttctcggaatcgccgccgatctcctctgcgacggcaacttcgcttcttgccggaaattcgctctcttctcccgcgactacgacccggaaaaccccgtcgtggaaagaatcctcgccgtcgccgacgttctcctcgccgaaaagaggcgcgacccgaccgactggtaccccattttgcaactgacccgacccgactcccgaaaccgccgcctcgttcggacccagttcgagaagctcacggcgctgttgaacccggaagacaacggcttcccgttttccgacgaggcgctcgggctggtccacaaggcgtgggccgcgctgtccgacccggggctcggaaatgggcccaagaacgggccgaaaagcccgaagcttgaagagggtttggccggagagacgttctggacggtttgtccgtactgctatggcatgtttatgtacaagaaggtgtttgaggagtgttgcctgaggtgtcagatttgccggaaggcgttccacggcgtggcgattaggccgccggcgcccgagattttggtggaggggaaggagcagtactattttacttatgggtgttttcctatggagtacaatgaggaagcaaagaagagtaatgaggacacaaagaagaggcagatggaggaaggtgtttgtgttgtggagatttctgatgatgaggaggaggtggtggtgaagaatgtgggtggaggagggaagttttcgggtgaagggaaggctccggtgaagagaatgaaggctccggcgaggaggatgaaggggatgaagacgaaaacagtggcgagtaggaggggtgggatggtgaaagacttggacttgaatggtgggtctggaaatgggaatggtgaaatgggtgatttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

306

Amino Acids

33.9

Weight (kDa)

5.96

Isoelectric Point (pI)

49.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19770
malus_domestica MD15G1313800.v1.1
prunus_persica Prupe.6G198600_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0111341
rosa_laevigata RLG00000017887
rosa_multiflora Rmu_co8456405.1_g000001
rosa_roxburghii Rroxscaffold_2G00132480
rosa_rugosa Rorug02G0172800
rosa_samantha Rh2AG226000 Rh2BG237800 Rh2CG229000 Rh2DG233500
rosa_wichuraiana Rw2G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 207
AccB1I GGYRCC 2 cut(s) 207, 562
AccB7I CCANNNNNTGG 1 cut(s) 544
AccII CGCG 3 cut(s) 117, 192, 359
AciI CCGC 6 cut(s) 57, 115, 247, 250, 357, 557
AcoI YGGCCR 1 cut(s) 429
AcsI RAATTY 1 cut(s) 98
AcyI GRCGYC 1 cut(s) 563
AdeI CACNNNGTG 1 cut(s) 544
AfaI GTAC 6 cut(s) 27, 209, 461, 482, 596, 629
AfiI CCNNNNNNNGG 7 cut(s) 142, 186, 372, 377, 395, 396, 544
AgsI TTSAA 3 cut(s) 292, 419, 877
AhdI GACNNNNNGTC 1 cut(s) 453
AluBI AGCT 3 cut(s) 43, 277, 415
AluI AGCT 3 cut(s) 43, 277, 415
Alw26I GTCTC 1 cut(s) 431
Ama87I CYCGRG 4 cut(s) 29, 332, 370, 566
AoxI GGCC 5 cut(s) 354, 386, 398, 429, 554
ApaI GGGCCC 1 cut(s) 390
ApeKI GCWGC 1 cut(s) 15
ApoI RAATTY 1 cut(s) 98
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
Asp700I GAANNNNTTC 2 cut(s) 42, 533
Asp718I GGTACC 1 cut(s) 207
AspLEI GCGC 5 cut(s) 192, 286, 331, 361, 565
AspS9I GGNCC 6 cut(s) 261, 340, 354, 386, 387, 398
AsuC2I CCSGG 4 cut(s) 128, 296, 371, 372
AsuHPI GGTGA 5 cut(s) 742, 776, 793, 871, 914
AvaI CYCGRG 4 cut(s) 29, 332, 370, 566
AvaII GGWCC 2 cut(s) 261, 340
AxyI CCTNAGG 1 cut(s) 509
BaeGI GKGCMC 1 cut(s) 390
BanI GGYRCC 2 cut(s) 207, 562
BanII GRGCYC 2 cut(s) 378, 390
BarI GAAGNNNNNNTAC 2 cut(s) 578, 610
BbsI GAAGAC 2 cut(s) 306, 830
BbvI GCAGC 1 cut(s) 27
BccI CCATC 2 cut(s) 670, 850
BceAI ACGGC 5 cut(s) 91, 143, 297, 322, 556
BcnI CCSGG 4 cut(s) 128, 296, 371, 372
BcoDI GTCTC 1 cut(s) 431
BfoI RGCGCY 3 cut(s) 287, 332, 566
BisI GCNGC 5 cut(s) 16, 57, 250, 357, 557
BlsI GCNGC 5 cut(s) 17, 58, 251, 358, 558
BmcAI AGTACT 1 cut(s) 596
Bme1390I CCNGG 4 cut(s) 128, 296, 371, 372
Bme18I GGWCC 2 cut(s) 261, 340
BmeRI GACNNNNNGTC 1 cut(s) 453
BmeT110I CYCGRG 4 cut(s) 29, 332, 370, 566
BmgT120I GGNCC 6 cut(s) 261, 340, 354, 386, 387, 398
BmiI GGNNCC 6 cut(s) 209, 263, 388, 564, 777, 798
BmrFI CCNGG 4 cut(s) 128, 296, 371, 372
BmrI ACTGGG 1 cut(s) 259
BmuI ACTGGG 1 cut(s) 259
BpiI GAAGAC 2 cut(s) 306, 830
BpuMI CCSGG 4 cut(s) 128, 296, 371, 372
BsaHI GRCGYC 1 cut(s) 563
BsaJI CCNNGG 3 cut(s) 370, 371, 538
BsaWI WCCGGW 1 cut(s) 778
Bsc4I CCNNNNNNNGG 7 cut(s) 142, 186, 372, 377, 395, 396, 544
Bse118I RCCGGY 1 cut(s) 559
Bse1I ACTGG 2 cut(s) 209, 265
Bse21I CCTNAGG 1 cut(s) 509
BseDI CCNNGG 3 cut(s) 370, 371, 538
BseGI GGATG 3 cut(s) 816, 825, 861
BseLI CCNNNNNNNGG 7 cut(s) 142, 186, 372, 377, 395, 396, 544
BseMII CTCAG 1 cut(s) 500
BseNI ACTGG 2 cut(s) 209, 265
BseRI GAGGAG 7 cut(s) 56, 164, 512, 731, 734, 762, 820
BseSI GKGCMC 1 cut(s) 390
BseXI GCAGC 1 cut(s) 27
Bsh1236I CGCG 3 cut(s) 117, 192, 359
Bsh1285I CGRYCG 1 cut(s) 201
BshFI GGCC 5 cut(s) 356, 388, 400, 431, 556
BshNI GGYRCC 2 cut(s) 207, 562
BsiEI CGRYCG 1 cut(s) 201
BsiHKCI CYCGRG 4 cut(s) 29, 332, 370, 566
BsiSI CCGG 9 cut(s) 94, 128, 296, 371, 432, 526, 560, 779, 800
BslI CCNNNNNNNGG 7 cut(s) 142, 186, 372, 377, 395, 396, 544
BsmAI GTCTC 1 cut(s) 431
BsmBI CGTCTC 1 cut(s) 431
BsnI GGCC 5 cut(s) 356, 388, 400, 431, 556
BsoBI CYCGRG 4 cut(s) 29, 332, 370, 566
Bsp120I GGGCCC 1 cut(s) 386
Bsp1286I GDGCHC 2 cut(s) 378, 390
Bsp1407I TGTACA 1 cut(s) 480
Bsp143I GATC 1 cut(s) 61
BspACI CCGC 6 cut(s) 57, 115, 247, 250, 357, 557
BspANI GGCC 5 cut(s) 356, 388, 400, 431, 556
BspCNI CTCAG 1 cut(s) 501
BspFNI CGCG 3 cut(s) 117, 192, 359
BspLI GGNNCC 6 cut(s) 209, 263, 388, 564, 777, 798
BspT107I GGYRCC 2 cut(s) 207, 562
BsrFI RCCGGY 1 cut(s) 559
BsrGI TGTACA 1 cut(s) 480
BsrI ACTGG 2 cut(s) 209, 265
BssAI RCCGGY 1 cut(s) 559
BssECI CCNNGG 3 cut(s) 370, 371, 538
BssMI GATC 1 cut(s) 61
BssNI GRCGYC 1 cut(s) 563
Bst4CI ACNGT 2 cut(s) 451, 835
Bst6I CTCTTC 5 cut(s) 113, 414, 641, 662, 779
BstACI GRCGYC 1 cut(s) 563
BstAUI TGTACA 1 cut(s) 480
BstC8I GCNNGC 1 cut(s) 561
BstDEI CTNAG 1 cut(s) 509
BstDSI CCRYGG 1 cut(s) 538
BstF5I GGATG 3 cut(s) 816, 825, 861
BstFNI CGCG 3 cut(s) 117, 192, 359
BstH2I RGCGCY 3 cut(s) 287, 332, 566
BstHHI GCGC 5 cut(s) 192, 286, 331, 361, 565
BstKTI GATC 1 cut(s) 64
BstMAI GTCTC 1 cut(s) 431
BstMBI GATC 1 cut(s) 61
BstMCI CGRYCG 1 cut(s) 201
BstMWI GCNNNNNNNGC 4 cut(s) 21, 283, 356, 562
BstNSI RCATGY 1 cut(s) 475
BstSCI CCNGG 4 cut(s) 126, 294, 369, 370
BstSLI GKGCMC 1 cut(s) 390
BstUI CGCG 3 cut(s) 117, 192, 359
BstV1I GCAGC 1 cut(s) 27
BstV2I GAAGAC 2 cut(s) 306, 830
Bsu36I CCTNAGG 1 cut(s) 509
BsuRI GGCC 5 cut(s) 356, 388, 400, 431, 556
BtgI CCRYGG 1 cut(s) 538
BtsCI GGATG 3 cut(s) 816, 825, 861
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 2 cut(s) 25, 840
Cac8I GCNNGC 1 cut(s) 561
CfoI GCGC 5 cut(s) 192, 286, 331, 361, 565
Cfr10I RCCGGY 1 cut(s) 559
Cfr13I GGNCC 6 cut(s) 261, 340, 354, 386, 387, 398
Cfr9I CCCGGG 1 cut(s) 370
Csp6I GTAC 6 cut(s) 26, 208, 460, 481, 595, 628
CviAII CATG 1 cut(s) 472
CviQI GTAC 6 cut(s) 26, 208, 460, 481, 595, 628
DdeI CTNAG 1 cut(s) 509
DinI GGCGCC 1 cut(s) 564
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
DraIII CACNNNGTG 1 cut(s) 544
DriI GACNNNNNGTC 1 cut(s) 453
EaeI YGGCCR 1 cut(s) 429
Eam1104I CTCTTC 5 cut(s) 113, 414, 641, 662, 779
Eam1105I GACNNNNNGTC 1 cut(s) 453
EarI CTCTTC 5 cut(s) 113, 414, 641, 662, 779
Eco24I GRGCYC 2 cut(s) 378, 390
Eco47I GGWCC 2 cut(s) 261, 340
Eco81I CCTNAGG 1 cut(s) 509
Eco88I CYCGRG 4 cut(s) 29, 332, 370, 566
EcoT38I GRGCYC 2 cut(s) 378, 390
EgeI GGCGCC 1 cut(s) 564
EheI GGCGCC 1 cut(s) 564
Esp3I CGTCTC 1 cut(s) 431
FaeI CATG 1 cut(s) 475
FaiI YATR 5 cut(s) 468, 473, 479, 609, 623
FatI CATG 1 cut(s) 471
FauI CCCGC 1 cut(s) 122
Fnu4HI GCNGC 5 cut(s) 16, 57, 250, 357, 557
FokI GGATG 3 cut(s) 823, 832, 868
FriOI GRGCYC 2 cut(s) 378, 390
Fsp4HI GCNGC 5 cut(s) 16, 57, 250, 357, 557
GlaI GCGC 5 cut(s) 191, 285, 330, 360, 564
GluI GCNGC 5 cut(s) 16, 57, 250, 357, 557
HaeII RGCGCY 3 cut(s) 287, 332, 566
HaeIII GGCC 5 cut(s) 356, 388, 400, 431, 556
HapII CCGG 9 cut(s) 94, 128, 296, 371, 432, 526, 560, 779, 800
HhaI GCGC 5 cut(s) 192, 286, 331, 361, 565
Hin1I GRCGYC 1 cut(s) 563
Hin1II CATG 1 cut(s) 475
Hin6I GCGC 5 cut(s) 190, 284, 329, 359, 563
HinP1I GCGC 5 cut(s) 190, 284, 329, 359, 563
HindIII AAGCTT 2 cut(s) 41, 413
HinfI GANTC 4 cut(s) 32, 51, 150, 236
HpaII CCGG 9 cut(s) 94, 128, 296, 371, 432, 526, 560, 779, 800
HphI GGTGA 5 cut(s) 742, 776, 793, 871, 914
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 9 cut(s) 12, 37, 50, 261, 322, 367, 380, 519, 709
Hpy188III TCNNGA 4 cut(s) 240, 271, 445, 888
Hpy8I GTNNAC 1 cut(s) 343
Hpy99I CGWCG 5 cut(s) 77, 143, 164, 170, 326
HpyAV CCTTC 8 cut(s) 481, 523, 580, 677, 761, 766, 787, 808
HpyCH4III ACNGT 2 cut(s) 451, 835
HpyCH4IV ACGT 2 cut(s) 168, 440
HpyCH4V TGCA 1 cut(s) 220
HpyF10VI GCNNNNNNNGC 4 cut(s) 21, 283, 356, 562
HpyF3I CTNAG 1 cut(s) 509
HpySE526I ACGT 2 cut(s) 168, 440
Hsp92I GRCGYC 1 cut(s) 563
Hsp92II CATG 1 cut(s) 475
HspAI GCGC 5 cut(s) 190, 284, 329, 359, 563
KasI GGCGCC 1 cut(s) 562
KpnI GGTACC 1 cut(s) 211
KroI GCCGGC 1 cut(s) 559
KroNI GCCGGC 1 cut(s) 561
Kzo9I GATC 1 cut(s) 61
LmnI GCTCC 3 cut(s) 589, 781, 802
Lsp1109I GCAGC 1 cut(s) 27
MaeII ACGT 2 cut(s) 168, 440
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MboII GAAGA 8 cut(s) 100, 311, 431, 658, 679, 745, 796, 835
MhlI GDGCHC 2 cut(s) 378, 390
MluCI AATT 1 cut(s) 98
Mly113I GGCGCC 1 cut(s) 563
MlyI GAGTC 2 cut(s) 41, 230
MmeI TCCRAC 2 cut(s) 345, 390
MreI CGCCGGCG 1 cut(s) 559
MroNI GCCGGC 1 cut(s) 559
MroXI GAANNNNTTC 2 cut(s) 42, 533
MslI CAYNNNNRTG 1 cut(s) 476
MspI CCGG 9 cut(s) 94, 128, 296, 371, 432, 526, 560, 779, 800
MspR9I CCNGG 4 cut(s) 128, 296, 371, 372
MvnI CGCG 3 cut(s) 117, 192, 359
MwoI GCNNNNNNNGC 4 cut(s) 21, 283, 356, 562
NaeI GCCGGC 1 cut(s) 561
NarI GGCGCC 1 cut(s) 563
NciI CCSGG 4 cut(s) 128, 296, 371, 372
NdeII GATC 1 cut(s) 61
NgoMIV GCCGGC 1 cut(s) 559
NlaIII CATG 1 cut(s) 475
NlaIV GGNNCC 6 cut(s) 209, 263, 388, 564, 777, 798
NspI RCATGY 1 cut(s) 475
PcsI WCGNNNNNNNCGW 2 cut(s) 162, 455
PdiI GCCGGC 1 cut(s) 561
PdmI GAANNNNTTC 2 cut(s) 42, 533
PfeI GAWTC 2 cut(s) 51, 150
PflMI CCANNNNNTGG 1 cut(s) 544
PkrI GCNGC 5 cut(s) 17, 58, 251, 358, 558
PleI GAGTC 2 cut(s) 40, 230
PluTI GGCGCC 1 cut(s) 566
PpsI GAGTC 2 cut(s) 40, 230
PspN4I GGNNCC 6 cut(s) 209, 263, 388, 564, 777, 798
PspOMI GGGCCC 1 cut(s) 386
PspPI GGNCC 6 cut(s) 261, 340, 354, 386, 387, 398
RsaI GTAC 6 cut(s) 27, 209, 461, 482, 596, 629
RsaNI GTAC 6 cut(s) 26, 208, 460, 481, 595, 628
RseI CAYNNNNRTG 1 cut(s) 476
SatI GCNGC 5 cut(s) 16, 57, 250, 357, 557
Sau3AI GATC 1 cut(s) 61
Sau96I GGNCC 6 cut(s) 261, 340, 354, 386, 387, 398
ScaI AGTACT 1 cut(s) 596
SchI GAGTC 2 cut(s) 41, 230
ScrFI CCNGG 4 cut(s) 128, 296, 371, 372
SduI GDGCHC 2 cut(s) 378, 390
SetI ASST 9 cut(s) 45, 171, 279, 417, 443, 492, 515, 688, 726
SfoI GGCGCC 1 cut(s) 564
SgrAI CRCCGGYG 1 cut(s) 559
SinI GGWCC 2 cut(s) 261, 340
SmaI CCCGGG 1 cut(s) 372
SmiMI CAYNNNNRTG 1 cut(s) 476
Sse9I AATT 1 cut(s) 98
SsiI CCGC 6 cut(s) 57, 115, 247, 250, 357, 557
SspDI GGCGCC 1 cut(s) 562
StyD4I CCNGG 4 cut(s) 126, 294, 369, 370
TaaI ACNGT 2 cut(s) 451, 835
TaiI ACGT 2 cut(s) 171, 443
TaqI TCGA 1 cut(s) 270
TaqII GACCGA 1 cut(s) 215
TasI AATT 1 cut(s) 98
TatI WGTACW 3 cut(s) 480, 594, 627
TauI GCSGC 4 cut(s) 59, 252, 359, 559
TfiI GAWTC 2 cut(s) 51, 150
TscAI CASTG 2 cut(s) 25, 840
TseI GCWGC 1 cut(s) 15
TspDTI ATGAA 3 cut(s) 806, 827, 836
TspGWI ACGGA 1 cut(s) 447
TspMI CCCGGG 1 cut(s) 370
TspRI CASTG 2 cut(s) 25, 840
Van91I CCANNNNNTGG 1 cut(s) 544
VpaK11BI GGWCC 2 cut(s) 261, 340
XapI RAATTY 1 cut(s) 98
XceI RCATGY 1 cut(s) 475
XmaI CCCGGG 1 cut(s) 370
XmnI GAANNNNTTC 2 cut(s) 42, 533
ZrmI AGTACT 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.