FvH4_1g19831

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0018780
Physical Location & Seq
Reverse (-)
12021249 .. 12024841
3593 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g19831.t1

Sequence Viewer

Length: 579 bp
ATGCTTACCCCGACTGGTGGTGATTGCGGTGATTGGGATTATGATAGATGGAGAGGTCAAAAGTGGTTTGCATTAGCGGCGAAGCTATGCAACCGTCACTGGCTAACGGACACGTGCCCCCAAGAGTGTGGGAAATGGACGGGTTTGGAAAGACCAAGTCCGCCAGGTGGCGAAGACCCAGTTGAGAGGTCGCATAGAGGGACGGCACACGCCTTAACCACTCGGCCAAAGCGTCCTGTTGATATCCCGGTCCGGCCCGATCCTAACATGATTGAGGCCCAGCCCGGTCTGAACCCCAACCATGATGGTTGCGATGGTGATGTTAGGTCGTGGCAAGATGATGATTTAGGCGACGATAGTGTTGGAGGAGGCGGTGGGAGTGGTGTTCGTAACTCGAAGCGGTGCGATGAAGCTGAGGGTGATGTCCTCATGAATAACCTTCATAGTTTTGCAAAGCTTAGAGAGTCTTTAGATTCGGCAGAGGAGGATGCGAAAATTGTATTTGATATACGCAGAGTTCAGAAGGAGATCATGATGATGAAGGCGAAGAAAAGGCTCGAAAGTCTCAATGTGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

21.34

Weight (kDa)

5.41

Isoelectric Point (pI)

56.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018780)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19831
rosa_chinensis RchiOBHm_Chr7g0229201
rosa_multiflora Rmu_co8402903.1_g000001 Rmu_sc0005791.1_g000019
rosa_roxburghii Rroxscaffold_2G00132200
rosa_rugosa Rorug04G0358600
rosa_samantha Rh1BG124700 Rh2BG212300 Rh2CG231300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 27, 77, 161, 372, 400
AclWI GGATC 1 cut(s) 254
AcoI YGGCCR 1 cut(s) 224
AcvI CACGTG 1 cut(s) 114
AfiI CCNNNNNNNGG 2 cut(s) 17, 167
AflIII ACRYGT 1 cut(s) 111
AjnI CCWGG 1 cut(s) 163
AluBI AGCT 3 cut(s) 85, 413, 457
AluI AGCT 3 cut(s) 85, 413, 457
Alw26I GTCTC 1 cut(s) 569
AlwI GGATC 1 cut(s) 254
AoxI GGCC 3 cut(s) 224, 254, 276
AspS9I GGNCC 3 cut(s) 250, 255, 277
AsuC2I CCSGG 2 cut(s) 248, 285
AsuHPI GGTGA 4 cut(s) 32, 41, 329, 431
AvaII GGWCC 1 cut(s) 250
BaeGI GKGCMC 1 cut(s) 119
BbrPI CACGTG 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 180
BbvCI CCTCAGC 1 cut(s) 414
BccI CCATC 3 cut(s) 42, 299, 308
BceAI ACGGC 1 cut(s) 219
BciT130I CCWGG 1 cut(s) 165
BcnI CCSGG 2 cut(s) 248, 285
BcoDI GTCTC 1 cut(s) 569
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
Bme1390I CCNGG 3 cut(s) 165, 248, 285
Bme18I GGWCC 1 cut(s) 250
BmgT120I GGNCC 3 cut(s) 250, 255, 277
BmrFI CCNGG 3 cut(s) 165, 248, 285
BmrI ACTGGG 1 cut(s) 173
BmsI GCATC 1 cut(s) 478
BmuI ACTGGG 1 cut(s) 173
BpiI GAAGAC 1 cut(s) 180
Bpu10I CCTNAGC 1 cut(s) 414
BpuMI CCSGG 2 cut(s) 248, 285
BsaAI YACGTR 1 cut(s) 114
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 167
Bse1I ACTGG 3 cut(s) 19, 104, 179
BseBI CCWGG 1 cut(s) 165
BseGI GGATG 1 cut(s) 493
BseLI CCNNNNNNNGG 2 cut(s) 17, 167
BseMII CTCAG 1 cut(s) 405
BseNI ACTGG 3 cut(s) 19, 104, 179
BseRI GAGGAG 2 cut(s) 381, 497
BseSI GKGCMC 1 cut(s) 119
BseYI CCCAGC 1 cut(s) 279
BshFI GGCC 3 cut(s) 226, 256, 278
BsiSI CCGG 3 cut(s) 248, 253, 285
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 2 cut(s) 17, 167
BsmAI GTCTC 1 cut(s) 569
BsmFI GGGAC 1 cut(s) 214
BsnI GGCC 3 cut(s) 226, 256, 278
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 2 cut(s) 259, 528
BspACI CCGC 5 cut(s) 27, 77, 161, 372, 400
BspANI GGCC 3 cut(s) 226, 256, 278
BspCNI CTCAG 1 cut(s) 406
BspHI TCATGA 2 cut(s) 429, 531
BspPI GGATC 1 cut(s) 254
BsrI ACTGG 3 cut(s) 19, 104, 179
BssMI GATC 2 cut(s) 259, 528
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 95
BstBAI YACGTR 1 cut(s) 114
BstDEI CTNAG 2 cut(s) 414, 458
BstF5I GGATG 1 cut(s) 493
BstKTI GATC 2 cut(s) 262, 531
BstMAI GTCTC 1 cut(s) 569
BstMBI GATC 2 cut(s) 259, 528
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNI CCWGG 1 cut(s) 165
BstSCI CCNGG 3 cut(s) 163, 246, 283
BstSLI GKGCMC 1 cut(s) 119
BstV2I GAAGAC 1 cut(s) 180
BstXI CCANNNNNNTGG 1 cut(s) 128
BsuRI GGCC 3 cut(s) 226, 256, 278
BtgZI GCGATG 2 cut(s) 327, 420
BtsCI GGATG 1 cut(s) 493
BtsIMutI CAGTG 1 cut(s) 97
CciI TCATGA 2 cut(s) 429, 531
Cfr13I GGNCC 3 cut(s) 250, 255, 277
CpoI CGGWCCG 1 cut(s) 250
CseI GACGC 1 cut(s) 221
CspI CGGWCCG 1 cut(s) 250
CviAII CATG 4 cut(s) 268, 302, 430, 532
DdeI CTNAG 2 cut(s) 414, 458
DpnI GATC 2 cut(s) 261, 530
DpnII GATC 2 cut(s) 259, 528
EaeI YGGCCR 1 cut(s) 224
EciI GGCGGA 1 cut(s) 150
Eco32I GATATC 1 cut(s) 244
Eco47I GGWCC 1 cut(s) 250
Eco72I CACGTG 1 cut(s) 114
EcoRII CCWGG 1 cut(s) 163
EcoRV GATATC 1 cut(s) 244
FaeI CATG 4 cut(s) 271, 305, 433, 535
FaiI YATR 9 cut(s) 42, 88, 195, 269, 303, 431, 444, 509, 533
FaqI GGGAC 1 cut(s) 214
FatI CATG 4 cut(s) 267, 301, 429, 531
Fnu4HI GCNGC 1 cut(s) 78
FokI GGATG 1 cut(s) 500
Fsp4HI GCNGC 1 cut(s) 78
GluI GCNGC 1 cut(s) 78
GsaI CCCAGC 1 cut(s) 283
HaeIII GGCC 3 cut(s) 226, 256, 278
HapII CCGG 3 cut(s) 248, 253, 285
HgaI GACGC 1 cut(s) 221
Hin1II CATG 4 cut(s) 271, 305, 433, 535
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 2 cut(s) 464, 473
HpaII CCGG 3 cut(s) 248, 253, 285
HphI GGTGA 4 cut(s) 32, 41, 329, 431
Hpy188I TCNGA 2 cut(s) 291, 522
Hpy188III TCNNGA 2 cut(s) 430, 532
Hpy99I CGWCG 1 cut(s) 356
HpyAV CCTTC 3 cut(s) 449, 517, 535
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4IV ACGT 1 cut(s) 113
HpyCH4V TGCA 3 cut(s) 71, 90, 452
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 2 cut(s) 414, 458
HpySE526I ACGT 1 cut(s) 113
Hsp92II CATG 4 cut(s) 271, 305, 433, 535
Kzo9I GATC 2 cut(s) 259, 528
LpnPI CCDG 9 cut(s) 85, 150, 177, 192, 249, 261, 266, 293, 298
LweI GCATC 1 cut(s) 478
MaeII ACGT 1 cut(s) 113
MaeIII GTNAC 2 cut(s) 95, 389
MalI GATC 2 cut(s) 261, 530
MboI GATC 2 cut(s) 259, 528
MboII GAAGA 2 cut(s) 185, 559
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 1 cut(s) 495
MlyI GAGTC 1 cut(s) 473
MmeI TCCRAC 1 cut(s) 343
MseI TTAA 1 cut(s) 215
MslI CAYNNNNRTG 1 cut(s) 536
MspI CCGG 3 cut(s) 248, 253, 285
MspR9I CCNGG 3 cut(s) 165, 248, 285
MvaI CCWGG 1 cut(s) 165
MwoI GCNNNNNNNGC 1 cut(s) 77
NciI CCSGG 2 cut(s) 248, 285
NdeII GATC 2 cut(s) 259, 528
NlaIII CATG 4 cut(s) 271, 305, 433, 535
NmeAIII GCCGAG 1 cut(s) 202
NmuCI GTSAC 1 cut(s) 95
PagI TCATGA 2 cut(s) 429, 531
PcsI WCGNNNNNNNCGW 1 cut(s) 229
PfeI GAWTC 1 cut(s) 473
PflFI GACNNNGTC 1 cut(s) 156
PkrI GCNGC 1 cut(s) 79
PleI GAGTC 1 cut(s) 472
PmaCI CACGTG 1 cut(s) 114
PmlI CACGTG 1 cut(s) 114
PpsI GAGTC 1 cut(s) 472
Ppu21I YACGTR 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 163
PspCI CACGTG 1 cut(s) 114
PspFI CCCAGC 1 cut(s) 279
PspGI CCWGG 1 cut(s) 163
PspPI GGNCC 3 cut(s) 250, 255, 277
PsyI GACNNNGTC 1 cut(s) 156
RseI CAYNNNNRTG 1 cut(s) 536
Rsr2I CGGWCCG 1 cut(s) 250
RsrII CGGWCCG 1 cut(s) 250
SaqAI TTAA 1 cut(s) 215
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 2 cut(s) 259, 528
Sau96I GGNCC 3 cut(s) 250, 255, 277
SchI GAGTC 1 cut(s) 473
ScrFI CCNGG 3 cut(s) 165, 248, 285
SduI GDGCHC 1 cut(s) 119
SetI ASST 9 cut(s) 58, 87, 116, 169, 191, 329, 415, 441, 459
SfaNI GCATC 1 cut(s) 478
SinI GGWCC 1 cut(s) 250
SmiMI CAYNNNNRTG 1 cut(s) 536
Sse9I AATT 1 cut(s) 495
SsiI CCGC 5 cut(s) 27, 77, 161, 372, 400
StyD4I CCNGG 3 cut(s) 163, 246, 283
TaaI ACNGT 1 cut(s) 95
TaiI ACGT 1 cut(s) 116
TaqI TCGA 2 cut(s) 395, 558
TasI AATT 1 cut(s) 495
TauI GCSGC 1 cut(s) 80
TfiI GAWTC 1 cut(s) 473
Tru1I TTAA 1 cut(s) 215
Tru9I TTAA 1 cut(s) 215
TscAI CASTG 1 cut(s) 104
TseFI GTSAC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 4 cut(s) 423, 431, 446, 554
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 1 cut(s) 104
Tth111I GACNNNGTC 1 cut(s) 156
VpaK11BI GGWCC 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.