Rh2CG231300

SNW SKI-interacting

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0018780
Physical Location & Seq
Reverse (-)
23525276 .. 23525518
243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG231300.1

Sequence Viewer

Length: 243 bp
ATGGTGGCTCTGACGGAGATTTTCCTGCCTTCAAAATCTACCACAACCACTTACTACGATGAAAATAATGATCCGTGGTTCAGGCAGCGCTTCAATAAAGCTGAGACTTTTGTCATCATCAACATTGATAATTTTGCAAAGCTTAAAGAGTCTTTAGATGTAGCAGAGCAGAATGTTAGAGAAGTGGCTGATATGAGATGTCACGTTCATATGGAGATCATGAGGATGAAGGCAGAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000122 GO:0000350 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003714 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005730 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006915 GO:0006950 GO:0006970 GO:0006974 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0008134 GO:0008150 GO:0008152 GO:0008219 GO:0008380 GO:0008630 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010228 GO:0010467 GO:0010468 GO:0010555 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0010646 GO:0010647 GO:0010720 GO:0012501 GO:0016043 GO:0016070 GO:0016071 GO:0016363 GO:0017015 GO:0019219 GO:0019222 GO:0022008 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0023051 GO:0023052 GO:0023056 GO:0030154 GO:0030511 GO:0030522 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032104 GO:0032107 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0033120 GO:0033554 GO:0033993 GO:0034399 GO:0034622 GO:0034641 GO:0035257 GO:0035556 GO:0036002 GO:0042221 GO:0042752 GO:0042771 GO:0042809 GO:0042974 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045595 GO:0045597 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046332 GO:0046483 GO:0048024 GO:0048026 GO:0048384 GO:0048385 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048583 GO:0048584 GO:0048608 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050684 GO:0050685 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051254 GO:0051427 GO:0051569 GO:0051571 GO:0051716 GO:0051960 GO:0051962 GO:0060255 GO:0060284 GO:0061458 GO:0065003 GO:0065007 GO:0070013 GO:0070562 GO:0071007 GO:0071013 GO:0071014 GO:0071141 GO:0071704 GO:0071826 GO:0071840 GO:0072331 GO:0072332 GO:0080090 GO:0090092 GO:0090100 GO:0090287 GO:0090304 GO:0097159 GO:0097190 GO:0097193 GO:0097305 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903311 GO:1903313 GO:1903506 GO:1903507 GO:1903508 GO:1903844 GO:1903846 GO:1905269 GO:1990904 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03040 ko04330 ko05169 ko05203 map03040 map04330 map05169 map05203
Pfam Domains
Protein Families
SKIP_SNW

Protein Analysis

80

Amino Acids

9.5

Weight (kDa)

5.62

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018780)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19831
rosa_chinensis RchiOBHm_Chr7g0229201
rosa_multiflora Rmu_co8402903.1_g000001 Rmu_sc0005791.1_g000019
rosa_roxburghii Rroxscaffold_2G00132200
rosa_rugosa Rorug04G0358600
rosa_samantha Rh1BG124700 Rh2BG212300 Rh2CG231300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 65
AfeI AGCGCT 1 cut(s) 89
AgsI TTSAA 2 cut(s) 33, 94
AluBI AGCT 2 cut(s) 101, 142
AluI AGCT 2 cut(s) 101, 142
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 1 cut(s) 65
Aor51HI AGCGCT 1 cut(s) 89
ApeKI GCWGC 1 cut(s) 85
AspLEI GCGC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 98
BfoI RGCGCY 1 cut(s) 91
BisI GCNGC 1 cut(s) 86
BlsI GCNGC 1 cut(s) 87
BoxI GACNNNNGTC 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 74
BseDI CCNNGG 1 cut(s) 74
BseGI GGATG 1 cut(s) 231
BseMII CTCAG 1 cut(s) 93
BseXI GCAGC 1 cut(s) 97
BsmAI GTCTC 1 cut(s) 98
Bsp143I GATC 2 cut(s) 70, 216
BspCNI CTCAG 1 cut(s) 94
BspHI TCATGA 1 cut(s) 219
BspPI GGATC 1 cut(s) 65
BssECI CCNNGG 1 cut(s) 74
BssMI GATC 2 cut(s) 70, 216
BstDEI CTNAG 1 cut(s) 102
BstDSI CCRYGG 1 cut(s) 74
BstF5I GGATG 1 cut(s) 231
BstH2I RGCGCY 1 cut(s) 91
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 2 cut(s) 73, 219
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 2 cut(s) 70, 216
BstPAI GACNNNNGTC 1 cut(s) 110
BstV1I GCAGC 1 cut(s) 97
BtgI CCRYGG 1 cut(s) 74
BtsCI GGATG 1 cut(s) 231
CciI TCATGA 1 cut(s) 219
CfoI GCGC 1 cut(s) 90
CviAII CATG 1 cut(s) 220
CviJI RGCY 4 cut(s) 8, 101, 142, 188
CviKI_1 RGCY 4 cut(s) 8, 101, 142, 188
DdeI CTNAG 1 cut(s) 102
DpnI GATC 2 cut(s) 72, 218
DpnII GATC 2 cut(s) 70, 216
Eco47III AGCGCT 1 cut(s) 89
FaeI CATG 1 cut(s) 223
FaiI YATR 4 cut(s) 194, 210, 212, 221
FatI CATG 1 cut(s) 219
FauNDI CATATG 1 cut(s) 210
Fnu4HI GCNGC 1 cut(s) 86
FokI GGATG 1 cut(s) 238
Fsp4HI GCNGC 1 cut(s) 86
GlaI GCGC 1 cut(s) 89
GluI GCNGC 1 cut(s) 86
HaeII RGCGCY 1 cut(s) 91
HhaI GCGC 1 cut(s) 90
Hin1II CATG 1 cut(s) 223
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 1 cut(s) 149
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 1 cut(s) 220
HpyAV CCTTC 2 cut(s) 39, 223
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 1 cut(s) 137
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 1 cut(s) 223
HspAI GCGC 1 cut(s) 88
Kzo9I GATC 2 cut(s) 70, 216
LpnPI CCDG 2 cut(s) 38, 67
Lsp1109I GCAGC 1 cut(s) 97
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 200
MalI GATC 2 cut(s) 72, 218
MboI GATC 2 cut(s) 70, 216
MluCI AATT 1 cut(s) 130
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 1 cut(s) 216
MseI TTAA 1 cut(s) 144
MslI CAYNNNNRTG 1 cut(s) 224
NdeI CATATG 1 cut(s) 210
NdeII GATC 2 cut(s) 70, 216
NlaIII CATG 1 cut(s) 223
NmuCI GTSAC 1 cut(s) 200
PagI TCATGA 1 cut(s) 219
PkrI GCNGC 1 cut(s) 87
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PshAI GACNNNNGTC 1 cut(s) 110
RseI CAYNNNNRTG 1 cut(s) 224
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 1 cut(s) 86
Sau3AI GATC 2 cut(s) 70, 216
SchI GAGTC 1 cut(s) 158
SetI ASST 3 cut(s) 103, 144, 207
SgeI CNNG 5 cut(s) 37, 87, 94, 215, 232
SmiMI CAYNNNNRTG 1 cut(s) 224
Sse9I AATT 1 cut(s) 130
TaiI ACGT 1 cut(s) 207
TasI AATT 1 cut(s) 130
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 1 cut(s) 85
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 3 cut(s) 75, 197, 242
TspGWI ACGGA 2 cut(s) 29, 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.