No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g19831 |
| rosa_chinensis | RchiOBHm_Chr7g0229201 |
| rosa_multiflora | Rmu_co8402903.1_g000001 Rmu_sc0005791.1_g000019 |
| rosa_roxburghii | Rroxscaffold_2G00132200 |
| rosa_rugosa | Rorug04G0358600 |
| rosa_samantha | Rh1BG124700 Rh2BG212300 Rh2CG231300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 153 |
| AciI | CCGC | 3 cut(s) | 86, 153, 164 |
| AclWI | GGATC | 1 cut(s) | 131 |
| AcuI | CTGAAG | 1 cut(s) | 267 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 297 |
| Alw26I | GTCTC | 3 cut(s) | 84, 111, 223 |
| AlwI | GGATC | 1 cut(s) | 131 |
| AoxI | GGCC | 1 cut(s) | 141 |
| AspLEI | GCGC | 4 cut(s) | 64, 153, 158, 251 |
| AsuHPI | GGTGA | 2 cut(s) | 74, 113 |
| AsuII | TTCGAA | 1 cut(s) | 16 |
| BceAI | ACGGC | 1 cut(s) | 314 |
| BcoDI | GTCTC | 3 cut(s) | 84, 111, 223 |
| BfoI | RGCGCY | 1 cut(s) | 159 |
| BisI | GCNGC | 1 cut(s) | 154 |
| BlsI | GCNGC | 1 cut(s) | 155 |
| BpmI | CTGGAG | 3 cut(s) | 217, 256, 274 |
| Bpu14I | TTCGAA | 1 cut(s) | 16 |
| BsaJI | CCNNGG | 1 cut(s) | 296 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 113, 143, 254, 284, 288, 318 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 297 |
| Bse1I | ACTGG | 2 cut(s) | 234, 273 |
| BseDI | CCNNGG | 1 cut(s) | 296 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 297 |
| BseMII | CTCAG | 1 cut(s) | 89 |
| BseNI | ACTGG | 2 cut(s) | 234, 273 |
| BseRI | GAGGAG | 3 cut(s) | 150, 220, 259 |
| Bsh1236I | CGCG | 1 cut(s) | 153 |
| BshFI | GGCC | 1 cut(s) | 143 |
| BsiSI | CCGG | 2 cut(s) | 132, 140 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 297 |
| BsmAI | GTCTC | 3 cut(s) | 84, 111, 223 |
| BsmBI | CGTCTC | 1 cut(s) | 111 |
| BsnI | GGCC | 1 cut(s) | 143 |
| Bsp119I | TTCGAA | 1 cut(s) | 16 |
| Bsp143I | GATC | 1 cut(s) | 136 |
| BspACI | CCGC | 3 cut(s) | 86, 153, 164 |
| BspANI | GGCC | 1 cut(s) | 143 |
| BspCNI | CTCAG | 1 cut(s) | 88 |
| BspFNI | CGCG | 1 cut(s) | 153 |
| BspPI | GGATC | 1 cut(s) | 131 |
| BspT104I | TTCGAA | 1 cut(s) | 16 |
| BsrI | ACTGG | 2 cut(s) | 234, 273 |
| BssECI | CCNNGG | 1 cut(s) | 296 |
| BssMI | GATC | 1 cut(s) | 136 |
| Bst4CI | ACNGT | 2 cut(s) | 125, 173 |
| Bst6I | CTCTTC | 1 cut(s) | 333 |
| BstBI | TTCGAA | 1 cut(s) | 16 |
| BstDEI | CTNAG | 1 cut(s) | 75 |
| BstDSI | CCRYGG | 1 cut(s) | 296 |
| BstFNI | CGCG | 1 cut(s) | 153 |
| BstH2I | RGCGCY | 1 cut(s) | 159 |
| BstHHI | GCGC | 4 cut(s) | 64, 153, 158, 251 |
| BstKTI | GATC | 1 cut(s) | 139 |
| BstMAI | GTCTC | 3 cut(s) | 84, 111, 223 |
| BstMBI | GATC | 1 cut(s) | 136 |
| BstUI | CGCG | 1 cut(s) | 153 |
| BsuRI | GGCC | 1 cut(s) | 143 |
| BtgI | CCRYGG | 1 cut(s) | 296 |
| BtsI | GCAGTG | 2 cut(s) | 244, 262 |
| BtsIMutI | CAGTG | 3 cut(s) | 169, 244, 262 |
| CfoI | GCGC | 4 cut(s) | 64, 153, 158, 251 |
| CviJI | RGCY | 5 cut(s) | 93, 143, 287, 294, 301 |
| CviKI_1 | RGCY | 5 cut(s) | 93, 143, 287, 294, 301 |
| DdeI | CTNAG | 1 cut(s) | 75 |
| DpnI | GATC | 1 cut(s) | 138 |
| DpnII | GATC | 1 cut(s) | 136 |
| Eam1104I | CTCTTC | 1 cut(s) | 333 |
| EarI | CTCTTC | 1 cut(s) | 333 |
| Eco57I | CTGAAG | 1 cut(s) | 267 |
| Esp3I | CGTCTC | 1 cut(s) | 111 |
| FaiI | YATR | 2 cut(s) | 8, 311 |
| FauI | CCCGC | 1 cut(s) | 93 |
| Fnu4HI | GCNGC | 1 cut(s) | 154 |
| Fsp4HI | GCNGC | 1 cut(s) | 154 |
| GlaI | GCGC | 4 cut(s) | 63, 152, 157, 250 |
| GluI | GCNGC | 1 cut(s) | 154 |
| GsuI | CTGGAG | 3 cut(s) | 217, 256, 274 |
| HaeII | RGCGCY | 1 cut(s) | 159 |
| HaeIII | GGCC | 1 cut(s) | 143 |
| HapII | CCGG | 2 cut(s) | 132, 140 |
| HhaI | GCGC | 4 cut(s) | 64, 153, 158, 251 |
| Hin6I | GCGC | 4 cut(s) | 62, 151, 156, 249 |
| HinP1I | GCGC | 4 cut(s) | 62, 151, 156, 249 |
| HincII | GTYRAC | 1 cut(s) | 27 |
| HindII | GTYRAC | 1 cut(s) | 27 |
| HinfI | GANTC | 1 cut(s) | 206 |
| HpaII | CCGG | 2 cut(s) | 132, 140 |
| HphI | GGTGA | 2 cut(s) | 74, 113 |
| Hpy166II | GTNNAC | 2 cut(s) | 27, 239 |
| Hpy188I | TCNGA | 1 cut(s) | 350 |
| Hpy8I | GTNNAC | 2 cut(s) | 27, 239 |
| HpyAV | CCTTC | 1 cut(s) | 291 |
| HpyCH4III | ACNGT | 2 cut(s) | 125, 173 |
| HpyCH4IV | ACGT | 1 cut(s) | 58 |
| HpyF3I | CTNAG | 1 cut(s) | 75 |
| HpySE526I | ACGT | 1 cut(s) | 58 |
| HspAI | GCGC | 4 cut(s) | 62, 151, 156, 249 |
| Kzo9I | GATC | 1 cut(s) | 136 |
| LmnI | GCTCC | 3 cut(s) | 163, 233, 272 |
| LpnPI | CCDG | 5 cut(s) | 145, 153, 247, 286, 304 |
| MaeII | ACGT | 1 cut(s) | 58 |
| MaeIII | GTNAC | 1 cut(s) | 119 |
| MalI | GATC | 1 cut(s) | 138 |
| MboI | GATC | 1 cut(s) | 136 |
| MboII | GAAGA | 4 cut(s) | 315, 320, 323, 331 |
| MluCI | AATT | 2 cut(s) | 20, 97 |
| MlyI | GAGTC | 1 cut(s) | 200 |
| MseI | TTAA | 1 cut(s) | 35 |
| MspI | CCGG | 2 cut(s) | 132, 140 |
| MteI | GCGCNGCGC | 1 cut(s) | 154 |
| MvnI | CGCG | 1 cut(s) | 153 |
| NdeII | GATC | 1 cut(s) | 136 |
| NmuCI | GTSAC | 1 cut(s) | 119 |
| NspV | TTCGAA | 1 cut(s) | 16 |
| PkrI | GCNGC | 1 cut(s) | 155 |
| PleI | GAGTC | 1 cut(s) | 200 |
| PpsI | GAGTC | 1 cut(s) | 200 |
| SaqAI | TTAA | 1 cut(s) | 35 |
| SatI | GCNGC | 1 cut(s) | 154 |
| Sau3AI | GATC | 1 cut(s) | 136 |
| SchI | GAGTC | 1 cut(s) | 200 |
| SetI | ASST | 2 cut(s) | 32, 61 |
| SfuI | TTCGAA | 1 cut(s) | 16 |
| Sse9I | AATT | 2 cut(s) | 20, 97 |
| SsiI | CCGC | 3 cut(s) | 86, 153, 164 |
| TaaI | ACNGT | 2 cut(s) | 125, 173 |
| TaiI | ACGT | 1 cut(s) | 61 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TasI | AATT | 2 cut(s) | 20, 97 |
| TauI | GCSGC | 1 cut(s) | 156 |
| Tru1I | TTAA | 1 cut(s) | 35 |
| Tru9I | TTAA | 1 cut(s) | 35 |
| TscAI | CASTG | 3 cut(s) | 176, 251, 269 |
| TseFI | GTSAC | 1 cut(s) | 119 |
| Tsp45I | GTSAC | 1 cut(s) | 119 |
| TspGWI | ACGGA | 2 cut(s) | 93, 136 |
| TspRI | CASTG | 3 cut(s) | 176, 251, 269 |