Rh1BG124700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
21141277 .. 21151933
10657 bp
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UTR
Exon/CDS
Intron
Rh1BG124700.1

Sequence Viewer

Length: 219 bp
ATGACTCATATTCAAGTCACGAGCAACATCAATCAAGCGTTTGAATGGTTTCAGGAACTGCCATTTTCGGGAGCTGAGATGTCAAGTCAGGATGCATCAGATGAACCTCAACCTGAGATGTCAGAGACTAATTTGCAAGAGCCATTTGATCTTTGGGGCTGTGCTTTCTGGACCAGAACAACATTAACAGGTGATGGGCTTCATGATGGAGGAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.04

Weight (kDa)

4.05

Isoelectric Point (pI)

67.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018780)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 68
AgsI TTSAA 2 cut(s) 14, 44
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw26I GTCTC 1 cut(s) 119
AlwNI CAGNNNCTG 1 cut(s) 58
Asp700I GAANNNNTTC 1 cut(s) 48
AspS9I GGNCC 1 cut(s) 171
AsuHPI GGTGA 1 cut(s) 203
AvaII GGWCC 1 cut(s) 171
BauI CACGAG 1 cut(s) 19
BccI CCATC 2 cut(s) 188, 200
BcoDI GTCTC 1 cut(s) 119
Bme18I GGWCC 1 cut(s) 171
BmgT120I GGNCC 1 cut(s) 171
BmsI GCATC 2 cut(s) 82, 104
Bsc4I CCNNNNNNNGG 1 cut(s) 68
BseGI GGATG 1 cut(s) 97
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMII CTCAG 2 cut(s) 66, 105
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 119
Bsp143I GATC 1 cut(s) 148
BspCNI CTCAG 2 cut(s) 67, 106
BspHI TCATGA 1 cut(s) 202
BssMI GATC 1 cut(s) 148
BssSI CACGAG 1 cut(s) 19
Bst2BI CACGAG 1 cut(s) 19
BstDEI CTNAG 2 cut(s) 75, 114
BstF5I GGATG 1 cut(s) 97
BstKTI GATC 1 cut(s) 151
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 1 cut(s) 148
BtsCI GGATG 1 cut(s) 97
CaiI CAGNNNCTG 1 cut(s) 58
CciI TCATGA 1 cut(s) 202
Cfr13I GGNCC 1 cut(s) 171
CviAII CATG 1 cut(s) 203
CviJI RGCY 4 cut(s) 74, 142, 159, 199
CviKI_1 RGCY 4 cut(s) 74, 142, 159, 199
DdeI CTNAG 2 cut(s) 75, 114
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
Eco47I GGWCC 1 cut(s) 171
EcoT22I ATGCAT 1 cut(s) 97
FaeI CATG 1 cut(s) 206
FaiI YATR 3 cut(s) 9, 204, 217
FatI CATG 1 cut(s) 202
FokI GGATG 1 cut(s) 104
Hin1II CATG 1 cut(s) 206
HinfI GANTC 1 cut(s) 4
HphI GGTGA 1 cut(s) 203
Hpy188I TCNGA 2 cut(s) 100, 124
Hpy188III TCNNGA 6 cut(s) 19, 53, 69, 89, 169, 203
HpyCH4V TGCA 2 cut(s) 95, 136
HpyF3I CTNAG 2 cut(s) 75, 114
Hsp92II CATG 1 cut(s) 206
Kzo9I GATC 1 cut(s) 148
LmnI GCTCC 2 cut(s) 71, 212
LpnPI CCDG 6 cut(s) 38, 74, 126, 154, 174, 187
LweI GCATC 2 cut(s) 82, 104
MaeIII GTNAC 1 cut(s) 16
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MluCI AATT 1 cut(s) 130
MnlI CCTC 2 cut(s) 117, 203
Mph1103I ATGCAT 1 cut(s) 97
MroXI GAANNNNTTC 1 cut(s) 48
MseI TTAA 1 cut(s) 185
NdeII GATC 1 cut(s) 148
NlaIII CATG 1 cut(s) 206
NmuCI GTSAC 1 cut(s) 16
NsiI ATGCAT 1 cut(s) 97
PagI TCATGA 1 cut(s) 202
PdmI GAANNNNTTC 1 cut(s) 48
PspPI GGNCC 1 cut(s) 171
PstNI CAGNNNCTG 1 cut(s) 58
SaqAI TTAA 1 cut(s) 185
Sau3AI GATC 1 cut(s) 148
Sau96I GGNCC 1 cut(s) 171
SetI ASST 4 cut(s) 76, 109, 115, 193
SfaNI GCATC 2 cut(s) 82, 104
SinI GGWCC 1 cut(s) 171
Sse9I AATT 1 cut(s) 130
TasI AATT 1 cut(s) 130
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TseFI GTSAC 1 cut(s) 16
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 2 cut(s) 117, 191
VpaK11BI GGWCC 1 cut(s) 171
XcmI CCANNNNNNNNNTGG 1 cut(s) 150
XmnI GAANNNNTTC 1 cut(s) 48
Zsp2I ATGCAT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.