Rmu_sc0005791.1_g000019

SNW SKI-interacting

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005791.1
OG0018780
Physical Location & Seq
Reverse (-)
101563 .. 106604
5042 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005791.1_g000019.1.cds

Sequence Viewer

Length: 924 bp
atgttcatcaccgtgcctccggcgtcgggcctcggttcgctctctcaatctcagtctcaccctcatagcctcacttcgccgtcggtctcagttcatcaccgtgcctccggcgtcgggcctcgtctcaccctcatagcctcacttcgccgtcgatctcagttcatcaccgtgcctccggcgtcgggcctcggttcgctctctcaatctcagtctcaccctcatagcctcacttcgccgtcggtctcagttcatcaccgtgcctccggcgtcgggcctcgtctcaccctcatagcctcacttcgccgtcggtctcagttcatcaccgtgcctccggcgtcgggcctcggttcgctctctcaatctcagtctcaccctcatagcctcacttcgccgtcggtctcagttcatcaccgtgcctccggcgtcgggcctcgtctcaccctcatagcctcacttcgccgtcggtctcagttcatcaccgtgcctccggcgtcgggcctcggttcgctctctcaatctcagtctcaccctcatagcctcacttcgccgtcggtctcagttcatcaccgtgcctccggcgtcgggcctcggtgcgcggcgctcctccactccactgctcctccagtcttccagcccacgggttctccaccagatatggtggctctgacggagattttcctgccttcaaaatcttccacaaccacttactacgatgaatataatgatccgtggttcaggcagcgcttcaataaggctgagacttttgtcatcatcaacattgataattttgcaaagcttaaagagtctttagatgtagcagagcagaatgttagagaagtggctgatatgagacgtcacgttcatatggagatcatgaggatgaaggcagaaaaaaaaaaggatcgaaagcgctgcaggcattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000122 GO:0000350 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003714 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005730 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006915 GO:0006950 GO:0006970 GO:0006974 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0008134 GO:0008150 GO:0008152 GO:0008219 GO:0008380 GO:0008630 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010228 GO:0010467 GO:0010468 GO:0010555 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0010646 GO:0010647 GO:0010720 GO:0012501 GO:0016043 GO:0016070 GO:0016071 GO:0016363 GO:0017015 GO:0019219 GO:0019222 GO:0022008 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0023051 GO:0023052 GO:0023056 GO:0030154 GO:0030511 GO:0030522 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032104 GO:0032107 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0033120 GO:0033554 GO:0033993 GO:0034399 GO:0034622 GO:0034641 GO:0035257 GO:0035556 GO:0036002 GO:0042221 GO:0042752 GO:0042771 GO:0042809 GO:0042974 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045595 GO:0045597 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046332 GO:0046483 GO:0048024 GO:0048026 GO:0048384 GO:0048385 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048583 GO:0048584 GO:0048608 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050684 GO:0050685 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051254 GO:0051427 GO:0051569 GO:0051571 GO:0051716 GO:0051960 GO:0051962 GO:0060255 GO:0060284 GO:0061458 GO:0065003 GO:0065007 GO:0070013 GO:0070562 GO:0071007 GO:0071013 GO:0071014 GO:0071141 GO:0071704 GO:0071826 GO:0071840 GO:0072331 GO:0072332 GO:0080090 GO:0090092 GO:0090100 GO:0090287 GO:0090304 GO:0097159 GO:0097190 GO:0097193 GO:0097305 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903311 GO:1903313 GO:1903506 GO:1903507 GO:1903508 GO:1903844 GO:1903846 GO:1905269 GO:1990904 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03040 ko04330 ko05169 ko05203 map03040 map04330 map05169 map05203
Pfam Domains
Protein Families
SKIP_SNW

Protein Analysis

307

Amino Acids

33.37

Weight (kDa)

11.42

Isoelectric Point (pI)

73.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018780)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19831
rosa_chinensis RchiOBHm_Chr7g0229201
rosa_multiflora Rmu_co8402903.1_g000001 Rmu_sc0005791.1_g000019
rosa_roxburghii Rroxscaffold_2G00132200
rosa_rugosa Rorug04G0358600
rosa_samantha Rh1BG124700 Rh2BG212300 Rh2CG231300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 856
AccII CGCG 1 cut(s) 596
AciI CCGC 1 cut(s) 596
AclWI GGATC 2 cut(s) 719, 909
AcyI GRCGYC 9 cut(s) 23, 111, 179, 267, 335, 423, 491, 579, 853
AfeI AGCGCT 2 cut(s) 743, 911
AfiI CCNNNNNNNGG 9 cut(s) 26, 114, 182, 270, 338, 426, 494, 582, 637
AgsI TTSAA 2 cut(s) 687, 748
AluBI AGCT 1 cut(s) 796
AluI AGCT 1 cut(s) 796
AlwI GGATC 2 cut(s) 719, 909
Aor51HI AGCGCT 2 cut(s) 743, 911
AoxI GGCC 8 cut(s) 28, 116, 184, 272, 340, 428, 496, 584
ApeKI GCWGC 2 cut(s) 739, 912
AspLEI GCGC 4 cut(s) 596, 601, 744, 912
AspS9I GGNCC 8 cut(s) 28, 116, 184, 272, 340, 428, 496, 584
BbsI GAAGAC 1 cut(s) 619
BbvI GCAGC 2 cut(s) 751, 899
BceAI ACGGC 7 cut(s) 64, 132, 220, 288, 376, 444, 532
BcgI CGANNNNNNTGC 1 cut(s) 894
BfmI CTRYAG 1 cut(s) 913
BfoI RGCGCY 3 cut(s) 602, 745, 913
BisI GCNGC 3 cut(s) 597, 740, 913
BlsI GCNGC 3 cut(s) 598, 741, 914
BmgT120I GGNCC 8 cut(s) 28, 116, 184, 272, 340, 428, 496, 584
BoxI GACNNNNGTC 1 cut(s) 764
BpiI GAAGAC 1 cut(s) 619
BpmI CTGGAG 1 cut(s) 606
BsaHI GRCGYC 9 cut(s) 23, 111, 179, 267, 335, 423, 491, 579, 853
BsaI GGTCTC 6 cut(s) 91, 247, 315, 403, 471, 559
BsaJI CCNNGG 7 cut(s) 31, 187, 343, 499, 587, 636, 728
Bsc4I CCNNNNNNNGG 9 cut(s) 26, 114, 182, 270, 338, 426, 494, 582, 637
Bse1I ACTGG 1 cut(s) 623
BseDI CCNNGG 7 cut(s) 31, 187, 343, 499, 587, 636, 728
BseGI GGATG 1 cut(s) 885
BseLI CCNNNNNNNGG 9 cut(s) 26, 114, 182, 270, 338, 426, 494, 582, 637
BseNI ACTGG 1 cut(s) 623
BseRI GAGGAG 2 cut(s) 593, 609
BseXI GCAGC 2 cut(s) 751, 899
Bsh1236I CGCG 1 cut(s) 596
BshFI GGCC 8 cut(s) 30, 118, 186, 274, 342, 430, 498, 586
BsiSI CCGG 8 cut(s) 20, 108, 176, 264, 332, 420, 488, 576
BslI CCNNNNNNNGG 9 cut(s) 26, 114, 182, 270, 338, 426, 494, 582, 637
BsmBI CGTCTC 4 cut(s) 128, 284, 440, 844
BsnI GGCC 8 cut(s) 30, 118, 186, 274, 342, 430, 498, 586
Bso31I GGTCTC 6 cut(s) 91, 247, 315, 403, 471, 559
Bsp143I GATC 4 cut(s) 152, 724, 870, 901
BspACI CCGC 1 cut(s) 596
BspANI GGCC 8 cut(s) 30, 118, 186, 274, 342, 430, 498, 586
BspFNI CGCG 1 cut(s) 596
BspHI TCATGA 1 cut(s) 873
BspMAI CTGCAG 1 cut(s) 917
BspPI GGATC 2 cut(s) 719, 909
BspTNI GGTCTC 6 cut(s) 91, 247, 315, 403, 471, 559
BsrI ACTGG 1 cut(s) 623
BssECI CCNNGG 7 cut(s) 31, 187, 343, 499, 587, 636, 728
BssMI GATC 4 cut(s) 152, 724, 870, 901
BssNI GRCGYC 9 cut(s) 23, 111, 179, 267, 335, 423, 491, 579, 853
Bst4CI ACNGT 8 cut(s) 13, 101, 169, 257, 325, 413, 481, 569
BstACI GRCGYC 9 cut(s) 23, 111, 179, 267, 335, 423, 491, 579, 853
BstC8I GCNNGC 1 cut(s) 917
BstDSI CCRYGG 2 cut(s) 636, 728
BstF5I GGATG 1 cut(s) 885
BstFNI CGCG 1 cut(s) 596
BstH2I RGCGCY 3 cut(s) 602, 745, 913
BstHHI GCGC 4 cut(s) 596, 601, 744, 912
BstKTI GATC 4 cut(s) 155, 727, 873, 904
BstMBI GATC 4 cut(s) 152, 724, 870, 901
BstMWI GCNNNNNNNGC 1 cut(s) 916
BstPAI GACNNNNGTC 1 cut(s) 764
BstSFI CTRYAG 1 cut(s) 913
BstUI CGCG 1 cut(s) 596
BstV1I GCAGC 2 cut(s) 751, 899
BstV2I GAAGAC 1 cut(s) 619
BsuRI GGCC 8 cut(s) 30, 118, 186, 274, 342, 430, 498, 586
BtgI CCRYGG 2 cut(s) 636, 728
BtsCI GGATG 1 cut(s) 885
BtsI GCAGTG 1 cut(s) 612
BtsIMutI CAGTG 1 cut(s) 612
Cac8I GCNNGC 1 cut(s) 917
CciI TCATGA 1 cut(s) 873
CfoI GCGC 4 cut(s) 596, 601, 744, 912
Cfr13I GGNCC 8 cut(s) 28, 116, 184, 272, 340, 428, 496, 584
CseI GACGC 8 cut(s) 12, 100, 168, 256, 324, 412, 480, 568
CviAII CATG 1 cut(s) 874
DpnI GATC 4 cut(s) 154, 726, 872, 903
DpnII GATC 4 cut(s) 152, 724, 870, 901
Eco31I GGTCTC 6 cut(s) 91, 247, 315, 403, 471, 559
Eco47III AGCGCT 2 cut(s) 743, 911
Esp3I CGTCTC 4 cut(s) 128, 284, 440, 844
FaeI CATG 1 cut(s) 877
FatI CATG 1 cut(s) 873
FauNDI CATATG 1 cut(s) 864
Fnu4HI GCNGC 3 cut(s) 597, 740, 913
FokI GGATG 1 cut(s) 892
Fsp4HI GCNGC 3 cut(s) 597, 740, 913
GlaI GCGC 4 cut(s) 595, 600, 743, 911
GluI GCNGC 3 cut(s) 597, 740, 913
GsuI CTGGAG 1 cut(s) 606
HaeII RGCGCY 3 cut(s) 602, 745, 913
HaeIII GGCC 8 cut(s) 30, 118, 186, 274, 342, 430, 498, 586
HapII CCGG 8 cut(s) 20, 108, 176, 264, 332, 420, 488, 576
HgaI GACGC 8 cut(s) 12, 100, 168, 256, 324, 412, 480, 568
HhaI GCGC 4 cut(s) 596, 601, 744, 912
Hin1I GRCGYC 9 cut(s) 23, 111, 179, 267, 335, 423, 491, 579, 853
Hin1II CATG 1 cut(s) 877
Hin6I GCGC 4 cut(s) 594, 599, 742, 910
HinP1I GCGC 4 cut(s) 594, 599, 742, 910
HindIII AAGCTT 1 cut(s) 794
HinfI GANTC 1 cut(s) 803
HpaII CCGG 8 cut(s) 20, 108, 176, 264, 332, 420, 488, 576
Hpy188I TCNGA 1 cut(s) 666
Hpy188III TCNNGA 1 cut(s) 874
HpyAV CCTTC 2 cut(s) 693, 877
HpyCH4III ACNGT 8 cut(s) 13, 101, 169, 257, 325, 413, 481, 569
HpyCH4IV ACGT 2 cut(s) 853, 858
HpyCH4V TGCA 2 cut(s) 791, 915
HpyF10VI GCNNNNNNNGC 1 cut(s) 916
HpySE526I ACGT 2 cut(s) 853, 858
Hsp92I GRCGYC 9 cut(s) 23, 111, 179, 267, 335, 423, 491, 579, 853
Hsp92II CATG 1 cut(s) 877
HspAI GCGC 4 cut(s) 594, 599, 742, 910
Kzo9I GATC 4 cut(s) 152, 724, 870, 901
LmnI GCTCC 2 cut(s) 606, 622
Lsp1109I GCAGC 2 cut(s) 751, 899
MaeII ACGT 2 cut(s) 853, 858
MaeIII GTNAC 1 cut(s) 854
MalI GATC 4 cut(s) 154, 726, 872, 903
MboI GATC 4 cut(s) 152, 724, 870, 901
MboII GAAGA 2 cut(s) 619, 684
MluCI AATT 1 cut(s) 784
MlyI GAGTC 1 cut(s) 812
MseI TTAA 1 cut(s) 798
MslI CAYNNNNRTG 9 cut(s) 11, 99, 167, 255, 323, 411, 479, 567, 878
MspI CCGG 8 cut(s) 20, 108, 176, 264, 332, 420, 488, 576
MteI GCGCNGCGC 1 cut(s) 597
MvnI CGCG 1 cut(s) 596
MwoI GCNNNNNNNGC 1 cut(s) 916
NdeI CATATG 1 cut(s) 864
NdeII GATC 4 cut(s) 152, 724, 870, 901
NlaIII CATG 1 cut(s) 877
NmuCI GTSAC 1 cut(s) 854
PagI TCATGA 1 cut(s) 873
PkrI GCNGC 3 cut(s) 598, 741, 914
PleI GAGTC 1 cut(s) 811
PpsI GAGTC 1 cut(s) 811
PshAI GACNNNNGTC 1 cut(s) 764
PspPI GGNCC 8 cut(s) 28, 116, 184, 272, 340, 428, 496, 584
PstI CTGCAG 1 cut(s) 917
RseI CAYNNNNRTG 9 cut(s) 11, 99, 167, 255, 323, 411, 479, 567, 878
SaqAI TTAA 1 cut(s) 798
SatI GCNGC 3 cut(s) 597, 740, 913
Sau3AI GATC 4 cut(s) 152, 724, 870, 901
Sau96I GGNCC 8 cut(s) 28, 116, 184, 272, 340, 428, 496, 584
SchI GAGTC 1 cut(s) 812
SetI ASST 3 cut(s) 798, 856, 861
SfcI CTRYAG 1 cut(s) 913
SmiMI CAYNNNNRTG 9 cut(s) 11, 99, 167, 255, 323, 411, 479, 567, 878
Sse9I AATT 1 cut(s) 784
SsiI CCGC 1 cut(s) 596
TaaI ACNGT 8 cut(s) 13, 101, 169, 257, 325, 413, 481, 569
TaiI ACGT 2 cut(s) 856, 861
TaqI TCGA 2 cut(s) 151, 904
TaqII GACCGA 6 cut(s) 73, 229, 297, 385, 453, 541
TasI AATT 1 cut(s) 784
TauI GCSGC 1 cut(s) 599
Tru1I TTAA 1 cut(s) 798
Tru9I TTAA 1 cut(s) 798
TscAI CASTG 1 cut(s) 619
TseFI GTSAC 1 cut(s) 854
TseI GCWGC 2 cut(s) 739, 912
Tsp45I GTSAC 1 cut(s) 854
TspGWI ACGGA 2 cut(s) 683, 717
TspRI CASTG 1 cut(s) 619
ZraI GACGTC 1 cut(s) 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.