Rh2BG212300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0018780
Physical Location & Seq
Forward (+)
19991957 .. 19996166
4210 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG212300.1

Sequence Viewer

Length: 561 bp
ATGGCGCATTTGTATCACATAATAAGTACTAACAATCGTTCGCTCTCTCAATCTCAGTCTCACCCTCACAGCCTCACTTCGCCGTCGGTCTTAGTTCGTCACCGTGCCTCCAGCGTCGGGCCTCCGTGCGCGGCACTCCTCCACTCCATTGCTCCTCCAGTCTTCCAGCCTACGGGTTCTCCACGTAGCACATGCTACAAAGCACCATTGCCAGAAGAACACCGACTAATGTCAAGTCAGGATGCATTAGATGAACCTCAACCTGAGATTTCAGACACTAATTTGCAAGAGTCTGAAAGTGGCATCAATAATGGAGTGAAATTGATTGAACTCATTCCGCAGTTTGATAAAGCATTGGAACGACTTAGAAATAAAGTAGCTGAAGAAGATTTTCGATCGAATAACTCTGCTCATCATGAGCGCATGAGGGAGATACCTTTGTCCTTAGTATTAAAGTGGTGGACAAAGCAAGCAAAATTTGAAGTTCACTCCACAGTTCCTAAGGAAAATATGCCTAGTGAAGTTGTACGATTGGCCAAGGTATCATATCTTGCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

20.84

Weight (kDa)

7.17

Isoelectric Point (pI)

67.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018780)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19831
rosa_chinensis RchiOBHm_Chr7g0229201
rosa_multiflora Rmu_co8402903.1_g000001 Rmu_sc0005791.1_g000019
rosa_roxburghii Rroxscaffold_2G00132200
rosa_rugosa Rorug04G0358600
rosa_samantha Rh1BG124700 Rh2BG212300 Rh2CG231300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 131
AciI CCGC 2 cut(s) 131, 338
AcoI YGGCCR 1 cut(s) 534
AcsI RAATTY 1 cut(s) 476
AcuI CTGAAG 1 cut(s) 402
AfaI GTAC 2 cut(s) 28, 528
AfiI CCNNNNNNNGG 2 cut(s) 117, 172
AgsI TTSAA 2 cut(s) 329, 482
AluBI AGCT 1 cut(s) 380
AluI AGCT 1 cut(s) 380
Alw26I GTCTC 1 cut(s) 63
AoxI GGCC 2 cut(s) 119, 534
ApoI RAATTY 1 cut(s) 476
Asp700I GAANNNNTTC 2 cut(s) 333, 390
AspLEI GCGC 3 cut(s) 7, 131, 423
AspS9I GGNCC 1 cut(s) 119
AsuHPI GGTGA 2 cut(s) 53, 92
AxyI CCTNAGG 1 cut(s) 501
BaeI ACNNNNGTAYC 2 cut(s) 425, 458
BalI TGGCCA 1 cut(s) 536
BbsI GAAGAC 1 cut(s) 154
BceAI ACGGC 1 cut(s) 67
BcoDI GTCTC 1 cut(s) 63
BfaI CTAG 1 cut(s) 516
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
BmcAI AGTACT 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 119
BmsI GCATC 2 cut(s) 232, 312
BoxI GACNNNNGTC 1 cut(s) 229
BpiI GAAGAC 1 cut(s) 154
BpmI CTGGAG 2 cut(s) 94, 141
BsaAI YACGTR 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 537
BsaXI ACNNNNNCTCC 4 cut(s) 92, 122, 163, 193
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 172
Bse1I ACTGG 1 cut(s) 158
Bse21I CCTNAGG 1 cut(s) 501
Bse3DI GCAATG 2 cut(s) 147, 206
BseDI CCNNGG 1 cut(s) 537
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 2 cut(s) 117, 172
BseMI GCAATG 2 cut(s) 147, 206
BseMII CTCAG 2 cut(s) 68, 255
BseNI ACTGG 1 cut(s) 158
BseRI GAGGAG 2 cut(s) 128, 144
Bsh1236I CGCG 1 cut(s) 131
Bsh1285I CGRYCG 1 cut(s) 398
BshFI GGCC 2 cut(s) 121, 536
BsiEI CGRYCG 1 cut(s) 398
BslI CCNNNNNNNGG 2 cut(s) 117, 172
BsmAI GTCTC 1 cut(s) 63
BsnI GGCC 2 cut(s) 121, 536
Bsp143I GATC 1 cut(s) 395
BspACI CCGC 2 cut(s) 131, 338
BspANI GGCC 2 cut(s) 121, 536
BspCNI CTCAG 2 cut(s) 67, 256
BspFNI CGCG 1 cut(s) 131
BspHI TCATGA 1 cut(s) 415
BsrDI GCAATG 2 cut(s) 147, 206
BsrI ACTGG 1 cut(s) 158
BssECI CCNNGG 1 cut(s) 537
BssMI GATC 1 cut(s) 395
BssT1I CCWWGG 1 cut(s) 537
Bst4CI ACNGT 2 cut(s) 104, 496
BstBAI YACGTR 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 471
BstDEI CTNAG 6 cut(s) 54, 91, 264, 365, 445, 501
BstF5I GGATG 1 cut(s) 247
BstFNI CGCG 1 cut(s) 131
BstHHI GCGC 3 cut(s) 7, 131, 423
BstKTI GATC 1 cut(s) 398
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 1 cut(s) 395
BstMCI CGRYCG 1 cut(s) 398
BstNSI RCATGY 1 cut(s) 195
BstPAI GACNNNNGTC 1 cut(s) 229
BstUI CGCG 1 cut(s) 131
BstV2I GAAGAC 1 cut(s) 154
Bsu36I CCTNAGG 1 cut(s) 501
BsuRI GGCC 2 cut(s) 121, 536
BtsCI GGATG 1 cut(s) 247
Cac8I GCNNGC 1 cut(s) 471
CciI TCATGA 1 cut(s) 415
CfoI GCGC 3 cut(s) 7, 131, 423
Cfr13I GGNCC 1 cut(s) 119
CseI GACGC 1 cut(s) 103
Csp6I GTAC 2 cut(s) 27, 527
CviAII CATG 3 cut(s) 192, 416, 424
CviJI RGCY 5 cut(s) 72, 121, 169, 380, 536
CviKI_1 RGCY 5 cut(s) 72, 121, 169, 380, 536
CviQI GTAC 2 cut(s) 27, 527
DdeI CTNAG 6 cut(s) 54, 91, 264, 365, 445, 501
DpnI GATC 1 cut(s) 397
DpnII GATC 1 cut(s) 395
EaeI YGGCCR 1 cut(s) 534
Eco130I CCWWGG 1 cut(s) 537
Eco57I CTGAAG 1 cut(s) 402
Eco81I CCTNAGG 1 cut(s) 501
EcoT14I CCWWGG 1 cut(s) 537
EcoT22I ATGCAT 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 537
FaeI CATG 3 cut(s) 195, 419, 427
FaiI YATR 7 cut(s) 20, 193, 417, 425, 512, 547, 559
FatI CATG 3 cut(s) 191, 415, 423
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 1 cut(s) 516
GlaI GCGC 3 cut(s) 6, 130, 422
GluI GCNGC 1 cut(s) 132
GsuI CTGGAG 2 cut(s) 94, 141
HaeIII GGCC 2 cut(s) 121, 536
HgaI GACGC 1 cut(s) 103
HhaI GCGC 3 cut(s) 7, 131, 423
Hin1II CATG 3 cut(s) 195, 419, 427
Hin6I GCGC 3 cut(s) 5, 129, 421
HinP1I GCGC 3 cut(s) 5, 129, 421
HinfI GANTC 1 cut(s) 290
HphI GGTGA 2 cut(s) 53, 92
Hpy166II GTNNAC 2 cut(s) 462, 487
Hpy188I TCNGA 2 cut(s) 274, 295
Hpy188III TCNNGA 2 cut(s) 239, 416
Hpy8I GTNNAC 2 cut(s) 462, 487
Hpy99I CGWCG 2 cut(s) 88, 119
HpyCH4III ACNGT 2 cut(s) 104, 496
HpyCH4IV ACGT 1 cut(s) 184
HpyCH4V TGCA 2 cut(s) 245, 286
HpyF3I CTNAG 6 cut(s) 54, 91, 264, 365, 445, 501
HpySE526I ACGT 1 cut(s) 184
Hsp92II CATG 3 cut(s) 195, 419, 427
HspAI GCGC 3 cut(s) 5, 129, 421
Kzo9I GATC 1 cut(s) 395
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 6 cut(s) 124, 171, 179, 224, 225, 276
LweI GCATC 2 cut(s) 232, 312
MaeI CTAG 1 cut(s) 516
MaeII ACGT 1 cut(s) 184
MaeIII GTNAC 1 cut(s) 98
MalI GATC 1 cut(s) 397
MboI GATC 1 cut(s) 395
MboII GAAGA 4 cut(s) 154, 227, 395, 398
MlsI TGGCCA 1 cut(s) 536
MluCI AATT 3 cut(s) 280, 320, 476
MluNI TGGCCA 1 cut(s) 536
MlyI GAGTC 1 cut(s) 299
MnlI CCTC 8 cut(s) 75, 83, 118, 132, 149, 165, 267, 420
Mox20I TGGCCA 1 cut(s) 536
Mph1103I ATGCAT 1 cut(s) 247
MroXI GAANNNNTTC 2 cut(s) 333, 390
MscI TGGCCA 1 cut(s) 536
MseI TTAA 1 cut(s) 452
Msp20I TGGCCA 1 cut(s) 536
MvnI CGCG 1 cut(s) 131
NdeII GATC 1 cut(s) 395
NlaIII CATG 3 cut(s) 195, 419, 427
NmuCI GTSAC 1 cut(s) 98
NsiI ATGCAT 1 cut(s) 247
NspI RCATGY 1 cut(s) 195
PagI TCATGA 1 cut(s) 415
PdmI GAANNNNTTC 2 cut(s) 333, 390
PkrI GCNGC 1 cut(s) 133
Ple19I CGATCG 1 cut(s) 398
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
Ppu21I YACGTR 1 cut(s) 185
PshAI GACNNNNGTC 1 cut(s) 229
PspPI GGNCC 1 cut(s) 119
PvuI CGATCG 1 cut(s) 398
RsaI GTAC 2 cut(s) 28, 528
RsaNI GTAC 2 cut(s) 27, 527
SaqAI TTAA 1 cut(s) 452
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 1 cut(s) 395
Sau96I GGNCC 1 cut(s) 119
ScaI AGTACT 1 cut(s) 28
SchI GAGTC 1 cut(s) 299
SetI ASST 6 cut(s) 187, 259, 265, 382, 439, 543
SfaNI GCATC 2 cut(s) 232, 312
Sse9I AATT 3 cut(s) 280, 320, 476
SsiI CCGC 2 cut(s) 131, 338
SspMI CTAG 1 cut(s) 516
StyI CCWWGG 1 cut(s) 537
TaaI ACNGT 2 cut(s) 104, 496
TaiI ACGT 1 cut(s) 187
TaqI TCGA 2 cut(s) 394, 398
TaqII GACCGA 1 cut(s) 76
TasI AATT 3 cut(s) 280, 320, 476
TatI WGTACW 1 cut(s) 26
TauI GCSGC 1 cut(s) 134
Tru1I TTAA 1 cut(s) 452
Tru9I TTAA 1 cut(s) 452
TseFI GTSAC 1 cut(s) 98
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 2 cut(s) 267, 546
TspGWI ACGGA 1 cut(s) 114
XapI RAATTY 1 cut(s) 476
XceI RCATGY 1 cut(s) 195
XmnI GAANNNNTTC 2 cut(s) 333, 390
XspI CTAG 1 cut(s) 516
ZrmI AGTACT 1 cut(s) 28
Zsp2I ATGCAT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.