Rroxscaffold_2G00132200

SNW SKI-interacting

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0018780
Physical Location & Seq
Forward (+)
69211114 .. 69213980
2867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00132200.1

Sequence Viewer

Length: 303 bp
ATGGTGGCTCTGACGGAGATTTTCCTGCCTTCAAAATCTACCACATCCACTTACTACGATGAATATAATGATCCGTGGTTCAGGCAGCGGTTCAATAAAGCTGACGCTTTTGTCATCATCAACAATGGTAATTTTGCAAAGCTTAGAGAGTCTTTAGATGTAGCAGAGCAGAATGTTAGAGAAGTGGCTGATATGAGACGTCAAGTTCATATGGAGATCATGAGGATGAAGGCAAAAAATAGGATCGAAAGCGCTGCAGGCATTAGGCAGCCAGGGGACATTACAGAATATCTTGACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04330 ko05169 ko05203 map03040 map04330 map05169 map05203
Pfam Domains
Protein Families
SKIP_SNW

Protein Analysis

100

Amino Acids

11.71

Weight (kDa)

6.58

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018780)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19831
rosa_chinensis RchiOBHm_Chr7g0229201
rosa_multiflora Rmu_co8402903.1_g000001 Rmu_sc0005791.1_g000019
rosa_roxburghii Rroxscaffold_2G00132200
rosa_rugosa Rorug04G0358600
rosa_samantha Rh1BG124700 Rh2BG212300 Rh2CG231300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
AatII GACGTC 1 cut(s) 202
AciI CCGC 1 cut(s) 88
AclWI GGATC 2 cut(s) 65, 251
AcyI GRCGYC 1 cut(s) 199
AfeI AGCGCT 1 cut(s) 253
AgsI TTSAA 2 cut(s) 33, 94
AjnI CCWGG 1 cut(s) 271
AluBI AGCT 2 cut(s) 101, 142
AluI AGCT 2 cut(s) 101, 142
Alw26I GTCTC 1 cut(s) 190
AlwI GGATC 2 cut(s) 65, 251
Aor51HI AGCGCT 1 cut(s) 253
ApeKI GCWGC 3 cut(s) 85, 254, 268
AspLEI GCGC 1 cut(s) 254
BbvI GCAGC 3 cut(s) 97, 241, 280
BcgI CGANNNNNNTGC 2 cut(s) 236, 270
BciT130I CCWGG 1 cut(s) 273
BcoDI GTCTC 1 cut(s) 190
BfmI CTRYAG 1 cut(s) 255
BfoI RGCGCY 1 cut(s) 255
BisI GCNGC 3 cut(s) 86, 255, 269
BlsI GCNGC 3 cut(s) 87, 256, 270
Bme1390I CCNGG 1 cut(s) 273
BmrFI CCNGG 1 cut(s) 273
BsaHI GRCGYC 1 cut(s) 199
BsaJI CCNNGG 2 cut(s) 74, 272
BseBI CCWGG 1 cut(s) 273
BseDI CCNNGG 2 cut(s) 74, 272
BseGI GGATG 2 cut(s) 44, 231
BseXI GCAGC 3 cut(s) 97, 241, 280
BslFI GGGAC 1 cut(s) 290
BsmAI GTCTC 1 cut(s) 190
BsmBI CGTCTC 1 cut(s) 190
BsmFI GGGAC 1 cut(s) 290
Bsp143I GATC 3 cut(s) 70, 216, 243
BspACI CCGC 1 cut(s) 88
BspHI TCATGA 1 cut(s) 219
BspMAI CTGCAG 1 cut(s) 259
BspPI GGATC 2 cut(s) 65, 251
BssECI CCNNGG 2 cut(s) 74, 272
BssMI GATC 3 cut(s) 70, 216, 243
BssNI GRCGYC 1 cut(s) 199
Bst2UI CCWGG 1 cut(s) 273
BstACI GRCGYC 1 cut(s) 199
BstC8I GCNNGC 1 cut(s) 259
BstDEI CTNAG 1 cut(s) 143
BstDSI CCRYGG 1 cut(s) 74
BstF5I GGATG 2 cut(s) 44, 231
BstH2I RGCGCY 1 cut(s) 255
BstHHI GCGC 1 cut(s) 254
BstKTI GATC 3 cut(s) 73, 219, 246
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 3 cut(s) 70, 216, 243
BstMWI GCNNNNNNNGC 1 cut(s) 258
BstNI CCWGG 1 cut(s) 273
BstSCI CCNGG 1 cut(s) 271
BstSFI CTRYAG 1 cut(s) 255
BstV1I GCAGC 3 cut(s) 97, 241, 280
BtgI CCRYGG 1 cut(s) 74
BtsCI GGATG 2 cut(s) 44, 231
Cac8I GCNNGC 1 cut(s) 259
CciI TCATGA 1 cut(s) 219
CfoI GCGC 1 cut(s) 254
CseI GACGC 1 cut(s) 113
CviAII CATG 1 cut(s) 220
CviJI RGCY 5 cut(s) 8, 101, 142, 188, 271
CviKI_1 RGCY 5 cut(s) 8, 101, 142, 188, 271
DdeI CTNAG 1 cut(s) 143
DpnI GATC 3 cut(s) 72, 218, 245
DpnII GATC 3 cut(s) 70, 216, 243
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
Eco47III AGCGCT 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 271
Esp3I CGTCTC 1 cut(s) 190
FaeI CATG 1 cut(s) 223
FaiI YATR 5 cut(s) 66, 194, 210, 212, 221
FaqI GGGAC 1 cut(s) 290
FatI CATG 1 cut(s) 219
FauNDI CATATG 1 cut(s) 210
Fnu4HI GCNGC 3 cut(s) 86, 255, 269
FokI GGATG 2 cut(s) 31, 238
Fsp4HI GCNGC 3 cut(s) 86, 255, 269
GlaI GCGC 1 cut(s) 253
GluI GCNGC 3 cut(s) 86, 255, 269
HaeII RGCGCY 1 cut(s) 255
HgaI GACGC 1 cut(s) 113
HhaI GCGC 1 cut(s) 254
Hin1I GRCGYC 1 cut(s) 199
Hin1II CATG 1 cut(s) 223
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 1 cut(s) 149
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 2 cut(s) 220, 293
HpyAV CCTTC 2 cut(s) 39, 223
HpyCH4IV ACGT 1 cut(s) 199
HpyCH4V TGCA 2 cut(s) 137, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 258
HpyF3I CTNAG 1 cut(s) 143
HpySE526I ACGT 1 cut(s) 199
Hsp92I GRCGYC 1 cut(s) 199
Hsp92II CATG 1 cut(s) 223
HspAI GCGC 1 cut(s) 252
Kzo9I GATC 3 cut(s) 70, 216, 243
LpnPI CCDG 5 cut(s) 38, 67, 243, 258, 285
Lsp1109I GCAGC 3 cut(s) 97, 241, 280
MaeII ACGT 1 cut(s) 199
MalI GATC 3 cut(s) 72, 218, 245
MboI GATC 3 cut(s) 70, 216, 243
MluCI AATT 1 cut(s) 130
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 1 cut(s) 216
MslI CAYNNNNRTG 1 cut(s) 224
MspA1I CMGCKG 1 cut(s) 88
MspR9I CCNGG 1 cut(s) 273
MvaI CCWGG 1 cut(s) 273
MwoI GCNNNNNNNGC 1 cut(s) 258
NdeI CATATG 1 cut(s) 210
NdeII GATC 3 cut(s) 70, 216, 243
NlaIII CATG 1 cut(s) 223
PagI TCATGA 1 cut(s) 219
PkrI GCNGC 3 cut(s) 87, 256, 270
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PstI CTGCAG 1 cut(s) 259
RseI CAYNNNNRTG 1 cut(s) 224
SatI GCNGC 3 cut(s) 86, 255, 269
Sau3AI GATC 3 cut(s) 70, 216, 243
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 273
SetI ASST 3 cut(s) 103, 144, 202
SfcI CTRYAG 1 cut(s) 255
SgeI CNNG 8 cut(s) 37, 87, 94, 215, 232, 270, 284, 285
SmiMI CAYNNNNRTG 1 cut(s) 224
Sse9I AATT 1 cut(s) 130
SsiI CCGC 1 cut(s) 88
StyD4I CCNGG 1 cut(s) 271
TaiI ACGT 1 cut(s) 202
TaqI TCGA 1 cut(s) 246
TasI AATT 1 cut(s) 130
TseI GCWGC 3 cut(s) 85, 254, 268
TspDTI ATGAA 3 cut(s) 75, 197, 242
TspGWI ACGGA 2 cut(s) 29, 63
ZraI GACGTC 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.