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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G65440 AT5G65440 AT5G65440 AT5G65440 AT5G65440 AT5G65440 AT5G65440 AT5G65440 AT5G65440 |
| fragaria_vesca | FvH4_1g19880 |
| malus_domestica | MD01G1037900.v1.1 |
| prunus_persica | Prupe.6G196800_v2.0.a1 |
| pyrus_communis | pycom01g06590 |
| rosa_chinensis | RchiOBHm_Chr2g0111701 |
| rosa_laevigata | RLG00000017918 |
| rosa_multiflora | Rmu_sc0000448.1_g000012 |
| rosa_roxburghii | Rroxscaffold_2G00132160 |
| rosa_rugosa | Rorug02G0175500 |
| rosa_samantha | Rh2AG228500 Rh2BG240800 Rh2CG231900 Rh2DG236500 |
| rosa_wichuraiana | Rw2G017650 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 1774, 1807 |
| Acc65I | GGTACC | 1 cut(s) | 994 |
| AccB1I | GGYRCC | 4 cut(s) | 994, 1527, 1783, 3160 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 281, 1124, 2404 |
| AccBSI | CCGCTC | 1 cut(s) | 118 |
| AccI | GTMKAC | 3 cut(s) | 444, 850, 2453 |
| AciI | CCGC | 5 cut(s) | 6, 116, 1016, 1385, 1781 |
| AclI | AACGTT | 1 cut(s) | 2100 |
| AclWI | GGATC | 4 cut(s) | 1129, 1683, 2934, 3051 |
| AcoI | YGGCCR | 2 cut(s) | 3, 24 |
| AcsI | RAATTY | 8 cut(s) | 399, 1308, 1418, 1481, 1987, 2016, 2195, 2999 |
| AcuI | CTGAAG | 5 cut(s) | 606, 1113, 1725, 2133, 2564 |
| AcyI | GRCGYC | 1 cut(s) | 3161 |
| AdeI | CACNNNGTG | 2 cut(s) | 923, 1912 |
| AfaI | GTAC | 9 cut(s) | 379, 996, 1024, 1584, 2568, 2772, 2959, 3065, 3186 |
| AflIII | ACRYGT | 2 cut(s) | 853, 982 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3023 |
| AjnI | CCWGG | 6 cut(s) | 884, 1117, 1246, 2741, 2841, 3059 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2068, 2100 |
| Alw21I | GWGCWC | 7 cut(s) | 217, 289, 619, 699, 928, 1222, 2109 |
| Alw26I | GTCTC | 8 cut(s) | 862, 1910, 2002, 2360, 2606, 2868, 3038, 3147 |
| Alw44I | GTGCAC | 2 cut(s) | 285, 615 |
| AlwI | GGATC | 4 cut(s) | 1129, 1683, 2934, 3051 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 668, 1124, 1382, 3060 |
| Ama87I | CYCGRG | 2 cut(s) | 1215, 1999 |
| AoxI | GGCC | 8 cut(s) | 3, 24, 637, 1268, 1456, 2152, 2681, 3070 |
| ApaLI | GTGCAC | 2 cut(s) | 285, 615 |
| ApeKI | GCWGC | 9 cut(s) | 372, 521, 713, 798, 1013, 1409, 1883, 2846, 3209 |
| ApoI | RAATTY | 8 cut(s) | 399, 1308, 1418, 1481, 1987, 2016, 2195, 2999 |
| AseI | ATTAAT | 1 cut(s) | 249 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 297, 2262 |
| Asp718I | GGTACC | 1 cut(s) | 994 |
| AspLEI | GCGC | 2 cut(s) | 1852, 3163 |
| AspS9I | GGNCC | 5 cut(s) | 870, 1457, 1796, 2682, 2899 |
| AsuC2I | CCSGG | 1 cut(s) | 1000 |
| AsuHPI | GGTGA | 8 cut(s) | 402, 780, 1080, 1172, 1262, 1675, 2151, 2529 |
| AvaI | CYCGRG | 2 cut(s) | 1215, 1999 |
| AvaII | GGWCC | 3 cut(s) | 870, 1796, 2899 |
| AxyI | CCTNAGG | 1 cut(s) | 1845 |
| BaeGI | GKGCMC | 2 cut(s) | 289, 619 |
| BalI | TGGCCA | 1 cut(s) | 26 |
| BanI | GGYRCC | 4 cut(s) | 994, 1527, 1783, 3160 |
| BanII | GRGCYC | 4 cut(s) | 178, 699, 1222, 2109 |
| BbsI | GAAGAC | 2 cut(s) | 681, 1393 |
| Bbv12I | GWGCWC | 7 cut(s) | 217, 289, 619, 699, 928, 1222, 2109 |
| BbvCI | CCTCAGC | 1 cut(s) | 2631 |
| BbvI | GCAGC | 9 cut(s) | 384, 508, 700, 785, 1000, 1396, 1870, 2858, 3196 |
| BciT130I | CCWGG | 6 cut(s) | 886, 1119, 1248, 2743, 2843, 3061 |
| BciVI | GTATCC | 1 cut(s) | 2729 |
| BclI | TGATCA | 1 cut(s) | 3199 |
| BcnI | CCSGG | 1 cut(s) | 1000 |
| BcoDI | GTCTC | 8 cut(s) | 862, 1910, 2002, 2360, 2606, 2868, 3038, 3147 |
| BfaI | CTAG | 6 cut(s) | 210, 506, 1286, 2066, 2570, 2835 |
| BfmI | CTRYAG | 7 cut(s) | 641, 799, 1299, 1410, 1864, 2110, 2232 |
| BfoI | RGCGCY | 1 cut(s) | 3164 |
| BfuAI | ACCTGC | 2 cut(s) | 1774, 1807 |
| BfuI | GTATCC | 1 cut(s) | 2729 |
| BglII | AGATCT | 1 cut(s) | 2206 |
| BmcAI | AGTACT | 3 cut(s) | 1024, 2568, 2959 |
| Bme1390I | CCNGG | 7 cut(s) | 886, 1000, 1119, 1248, 2743, 2843, 3061 |
| Bme18I | GGWCC | 3 cut(s) | 870, 1796, 2899 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3023 |
| BmeT110I | CYCGRG | 2 cut(s) | 1215, 1999 |
| BmgT120I | GGNCC | 5 cut(s) | 870, 1457, 1796, 2682, 2899 |
| BmiI | GGNNCC | 9 cut(s) | 175, 940, 996, 1004, 1369, 1529, 1785, 1797, 3162 |
| BmrFI | CCNGG | 7 cut(s) | 886, 1000, 1119, 1248, 2743, 2843, 3061 |
| BmsI | GCATC | 5 cut(s) | 1090, 1496, 2308, 2752, 3196 |
| BpiI | GAAGAC | 2 cut(s) | 681, 1393 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2739, 2771 |
| BpmI | CTGGAG | 1 cut(s) | 2148 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2631 |
| BpuEI | CTTGAG | 3 cut(s) | 623, 685, 1206 |
| BpuMI | CCSGG | 1 cut(s) | 1000 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1347 |
| BsaHI | GRCGYC | 1 cut(s) | 3161 |
| BsaI | GGTCTC | 1 cut(s) | 2002 |
| BsaJI | CCNNGG | 8 cut(s) | 123, 471, 884, 998, 1156, 1460, 1506, 2742 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 987, 1017 |
| Bse1I | ACTGG | 5 cut(s) | 461, 873, 1770, 2165, 2345 |
| Bse21I | CCTNAGG | 1 cut(s) | 1845 |
| Bse3DI | GCAATG | 1 cut(s) | 1371 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1347 |
| BseBI | CCWGG | 6 cut(s) | 886, 1119, 1248, 2743, 2843, 3061 |
| BseDI | CCNNGG | 8 cut(s) | 123, 471, 884, 998, 1156, 1460, 1506, 2742 |
| BseJI | GATNNNNATC | 1 cut(s) | 1347 |
| BseMI | GCAATG | 1 cut(s) | 1371 |
| BseMII | CTCAG | 8 cut(s) | 419, 498, 1836, 2337, 2546, 2622, 2768, 2968 |
| BseNI | ACTGG | 5 cut(s) | 461, 873, 1770, 2165, 2345 |
| BseRI | GAGGAG | 1 cut(s) | 3064 |
| BseSI | GKGCMC | 2 cut(s) | 289, 619 |
| BseXI | GCAGC | 9 cut(s) | 384, 508, 700, 785, 1000, 1396, 1870, 2858, 3196 |
| BseYI | CCCAGC | 1 cut(s) | 2626 |
| BsgI | GTGCAG | 3 cut(s) | 123, 986, 3151 |
| BshFI | GGCC | 8 cut(s) | 5, 26, 639, 1270, 1458, 2154, 2683, 3072 |
| BshNI | GGYRCC | 4 cut(s) | 994, 1527, 1783, 3160 |
| BsiHKAI | GWGCWC | 7 cut(s) | 217, 289, 619, 699, 928, 1222, 2109 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1215, 1999 |
| BsiSI | CCGG | 1 cut(s) | 1000 |
| BslFI | GGGAC | 4 cut(s) | 138, 307, 1809, 2609 |
| BsmAI | GTCTC | 8 cut(s) | 862, 1910, 2002, 2360, 2606, 2868, 3038, 3147 |
| BsmBI | CGTCTC | 1 cut(s) | 3038 |
| BsmFI | GGGAC | 4 cut(s) | 138, 307, 1809, 2609 |
| BsmI | GAATGC | 5 cut(s) | 1802, 1908, 2497, 2836, 2916 |
| BsnI | GGCC | 8 cut(s) | 5, 26, 639, 1270, 1458, 2154, 2683, 3072 |
| Bso31I | GGTCTC | 1 cut(s) | 2002 |
| BsoBI | CYCGRG | 2 cut(s) | 1215, 1999 |
| Bsp1286I | GDGCHC | 8 cut(s) | 178, 217, 289, 619, 699, 928, 1222, 2109 |
| Bsp143I | GATC | 8 cut(s) | 1121, 1282, 1675, 2206, 2427, 2926, 3056, 3199 |
| Bsp19I | CCATGG | 1 cut(s) | 471 |
| BspACI | CCGC | 5 cut(s) | 6, 116, 1016, 1385, 1781 |
| BspANI | GGCC | 8 cut(s) | 5, 26, 639, 1270, 1458, 2154, 2683, 3072 |
| BspCNI | CTCAG | 8 cut(s) | 418, 497, 1837, 2338, 2547, 2623, 2769, 2967 |
| BspLI | GGNNCC | 9 cut(s) | 175, 940, 996, 1004, 1369, 1529, 1785, 1797, 3162 |
| BspMAI | CTGCAG | 4 cut(s) | 803, 1414, 1868, 2114 |
| BspMI | ACCTGC | 2 cut(s) | 1774, 1807 |
| BspPI | GGATC | 4 cut(s) | 1129, 1683, 2934, 3051 |
| BspT107I | GGYRCC | 4 cut(s) | 994, 1527, 1783, 3160 |
| BspTNI | GGTCTC | 1 cut(s) | 2002 |
| BsrBI | CCGCTC | 1 cut(s) | 118 |
| BsrDI | GCAATG | 1 cut(s) | 1371 |
| BsrI | ACTGG | 5 cut(s) | 461, 873, 1770, 2165, 2345 |
| BssECI | CCNNGG | 8 cut(s) | 123, 471, 884, 998, 1156, 1460, 1506, 2742 |
| BssMI | GATC | 8 cut(s) | 1121, 1282, 1675, 2206, 2427, 2926, 3056, 3199 |
| BssNAI | GTATAC | 1 cut(s) | 2454 |
| BssNI | GRCGYC | 1 cut(s) | 3161 |
| BssT1I | CCWWGG | 5 cut(s) | 123, 471, 1156, 1460, 1506 |
| Bst1107I | GTATAC | 1 cut(s) | 2454 |
| Bst2UI | CCWGG | 6 cut(s) | 886, 1119, 1248, 2743, 2843, 3061 |
| Bst4CI | ACNGT | 8 cut(s) | 382, 621, 1571, 1579, 2770, 2962, 2977, 3129 |
| Bst6I | CTCTTC | 3 cut(s) | 241, 1089, 1886 |
| BstACI | GRCGYC | 1 cut(s) | 3161 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1382, 2831 |
| BstC8I | GCNNGC | 2 cut(s) | 2124, 2823 |
| BstDSI | CCRYGG | 1 cut(s) | 471 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 933, 2148 |
| BstH2I | RGCGCY | 1 cut(s) | 3164 |
| BstHHI | GCGC | 2 cut(s) | 1852, 3163 |
| BstKTI | GATC | 8 cut(s) | 1124, 1285, 1678, 2209, 2430, 2929, 3059, 3202 |
| BstMAI | GTCTC | 8 cut(s) | 862, 1910, 2002, 2360, 2606, 2868, 3038, 3147 |
| BstMBI | GATC | 8 cut(s) | 1121, 1282, 1675, 2206, 2427, 2926, 3056, 3199 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1382, 1787, 2831 |
| BstNI | CCWGG | 6 cut(s) | 886, 1119, 1248, 2743, 2843, 3061 |
| BstNSI | RCATGY | 4 cut(s) | 543, 857, 2126, 2142 |
| BstSCI | CCNGG | 7 cut(s) | 884, 998, 1117, 1246, 2741, 2841, 3059 |
| BstSFI | CTRYAG | 7 cut(s) | 641, 799, 1299, 1410, 1864, 2110, 2232 |
| BstSLI | GKGCMC | 2 cut(s) | 289, 619 |
| BstV1I | GCAGC | 9 cut(s) | 384, 508, 700, 785, 1000, 1396, 1870, 2858, 3196 |
| BstV2I | GAAGAC | 2 cut(s) | 681, 1393 |
| BstX2I | RGATCY | 4 cut(s) | 1121, 2206, 2926, 3056 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1777 |
| BstYI | RGATCY | 4 cut(s) | 1121, 2206, 2926, 3056 |
| BstZ17I | GTATAC | 1 cut(s) | 2454 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1845 |
| BsuI | GTATCC | 1 cut(s) | 2729 |
| BsuRI | GGCC | 8 cut(s) | 5, 26, 639, 1270, 1458, 2154, 2683, 3072 |
| BtgI | CCRYGG | 1 cut(s) | 471 |
| BtsIMutI | CAGTG | 7 cut(s) | 39, 582, 617, 880, 1777, 2022, 2540 |
| BveI | ACCTGC | 2 cut(s) | 1774, 1807 |
| Cac8I | GCNNGC | 2 cut(s) | 2124, 2823 |
| CaiI | CAGNNNCTG | 4 cut(s) | 668, 1124, 1382, 3060 |
| CfoI | GCGC | 2 cut(s) | 1852, 3163 |
| Cfr13I | GGNCC | 5 cut(s) | 870, 1457, 1796, 2682, 2899 |
| CseI | GACGC | 4 cut(s) | 309, 638, 2526, 3020 |
| Csp6I | GTAC | 9 cut(s) | 378, 995, 1023, 1583, 2567, 2771, 2958, 3064, 3185 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2984, 3019 |
| CviQI | GTAC | 9 cut(s) | 378, 995, 1023, 1583, 2567, 2771, 2958, 3064, 3185 |
| DinI | GGCGCC | 1 cut(s) | 3162 |
| DpnI | GATC | 8 cut(s) | 1123, 1284, 1677, 2208, 2429, 2928, 3058, 3201 |
| DpnII | GATC | 8 cut(s) | 1121, 1282, 1675, 2206, 2427, 2926, 3056, 3199 |
| DraIII | CACNNNGTG | 2 cut(s) | 923, 1912 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3023 |
| EaeI | YGGCCR | 2 cut(s) | 3, 24 |
| Eam1104I | CTCTTC | 3 cut(s) | 241, 1089, 1886 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3023 |
| EarI | CTCTTC | 3 cut(s) | 241, 1089, 1886 |
| Ecl136II | GAGCTC | 3 cut(s) | 697, 1220, 2107 |
| Eco130I | CCWWGG | 5 cut(s) | 123, 471, 1156, 1460, 1506 |
| Eco147I | AGGCCT | 2 cut(s) | 2154, 3072 |
| Eco24I | GRGCYC | 4 cut(s) | 178, 699, 1222, 2109 |
| Eco31I | GGTCTC | 1 cut(s) | 2002 |
| Eco47I | GGWCC | 3 cut(s) | 870, 1796, 2899 |
| Eco53kI | GAGCTC | 3 cut(s) | 697, 1220, 2107 |
| Eco57I | CTGAAG | 5 cut(s) | 606, 1113, 1725, 2133, 2564 |
| Eco81I | CCTNAGG | 1 cut(s) | 1845 |
| Eco88I | CYCGRG | 2 cut(s) | 1215, 1999 |
| EcoICRI | GAGCTC | 3 cut(s) | 697, 1220, 2107 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 933, 2148 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1796 |
| EcoRI | GAATTC | 3 cut(s) | 1308, 1481, 1987 |
| EcoRII | CCWGG | 6 cut(s) | 884, 1117, 1246, 2741, 2841, 3059 |
| EcoT14I | CCWWGG | 5 cut(s) | 123, 471, 1156, 1460, 1506 |
| EcoT22I | ATGCAT | 2 cut(s) | 565, 2666 |
| EcoT38I | GRGCYC | 4 cut(s) | 178, 699, 1222, 2109 |
| EgeI | GGCGCC | 1 cut(s) | 3162 |
| EheI | GGCGCC | 1 cut(s) | 3162 |
| ErhI | CCWWGG | 5 cut(s) | 123, 471, 1156, 1460, 1506 |
| Esp3I | CGTCTC | 1 cut(s) | 3038 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 657, 689, 2295, 2327 |
| FaqI | GGGAC | 4 cut(s) | 138, 307, 1809, 2609 |
| FauNDI | CATATG | 2 cut(s) | 1390, 1656 |
| FbaI | TGATCA | 1 cut(s) | 3199 |
| FblI | GTMKAC | 3 cut(s) | 444, 850, 2453 |
| FriOI | GRGCYC | 4 cut(s) | 178, 699, 1222, 2109 |
| FspBI | CTAG | 6 cut(s) | 210, 506, 1286, 2066, 2570, 2835 |
| GlaI | GCGC | 2 cut(s) | 1851, 3162 |
| GsaI | CCCAGC | 1 cut(s) | 2630 |
| GsuI | CTGGAG | 1 cut(s) | 2148 |
| HaeII | RGCGCY | 1 cut(s) | 3164 |
| HaeIII | GGCC | 8 cut(s) | 5, 26, 639, 1270, 1458, 2154, 2683, 3072 |
| HapII | CCGG | 1 cut(s) | 1000 |
| HgaI | GACGC | 4 cut(s) | 309, 638, 2526, 3020 |
| HhaI | GCGC | 2 cut(s) | 1852, 3163 |
| Hin1I | GRCGYC | 1 cut(s) | 3161 |
| Hin6I | GCGC | 2 cut(s) | 1850, 3161 |
| HinP1I | GCGC | 2 cut(s) | 1850, 3161 |
| HincII | GTYRAC | 1 cut(s) | 232 |
| HindII | GTYRAC | 1 cut(s) | 232 |
| HindIII | AAGCTT | 4 cut(s) | 68, 1441, 2304, 2819 |
| HpaII | CCGG | 1 cut(s) | 1000 |
| HphI | GGTGA | 8 cut(s) | 402, 780, 1080, 1172, 1262, 1675, 2151, 2529 |
| Hpy166II | GTNNAC | 7 cut(s) | 232, 287, 445, 617, 851, 1684, 2454 |
| Hpy8I | GTNNAC | 7 cut(s) | 232, 287, 445, 617, 851, 1684, 2454 |
| Hpy99I | CGWCG | 1 cut(s) | 2805 |
| HpyCH4III | ACNGT | 8 cut(s) | 382, 621, 1571, 1579, 2770, 2962, 2977, 3129 |
| HpyCH4IV | ACGT | 3 cut(s) | 447, 982, 2100 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1382, 1787, 2831 |
| HpySE526I | ACGT | 3 cut(s) | 447, 982, 2100 |
| Hsp92I | GRCGYC | 1 cut(s) | 3161 |
| HspAI | GCGC | 2 cut(s) | 1850, 3161 |
| KasI | GGCGCC | 1 cut(s) | 3160 |
| KpnI | GGTACC | 1 cut(s) | 998 |
| Ksp22I | TGATCA | 1 cut(s) | 3199 |
| Kzo9I | GATC | 8 cut(s) | 1121, 1282, 1675, 2206, 2427, 2926, 3056, 3199 |
| Lsp1109I | GCAGC | 9 cut(s) | 384, 508, 700, 785, 1000, 1396, 1870, 2858, 3196 |
| LweI | GCATC | 5 cut(s) | 1090, 1496, 2308, 2752, 3196 |
| MaeI | CTAG | 6 cut(s) | 210, 506, 1286, 2066, 2570, 2835 |
| MaeII | ACGT | 3 cut(s) | 447, 982, 2100 |
| MaeIII | GTNAC | 9 cut(s) | 37, 337, 408, 626, 1250, 1257, 1470, 1719, 1966 |
| MalI | GATC | 8 cut(s) | 1123, 1284, 1677, 2208, 2429, 2928, 3058, 3201 |
| MbiI | CCGCTC | 1 cut(s) | 118 |
| MboI | GATC | 8 cut(s) | 1121, 1282, 1675, 2206, 2427, 2926, 3056, 3199 |
| MfeI | CAATTG | 2 cut(s) | 843, 2808 |
| MflI | RGATCY | 4 cut(s) | 1121, 2206, 2926, 3056 |
| MhlI | GDGCHC | 8 cut(s) | 178, 217, 289, 619, 699, 928, 1222, 2109 |
| MlsI | TGGCCA | 1 cut(s) | 26 |
| MluNI | TGGCCA | 1 cut(s) | 26 |
| Mly113I | GGCGCC | 1 cut(s) | 3161 |
| MlyI | GAGTC | 7 cut(s) | 424, 833, 1684, 1849, 2714, 2847, 2870 |
| MmeI | TCCRAC | 1 cut(s) | 2622 |
| Mox20I | TGGCCA | 1 cut(s) | 26 |
| Mph1103I | ATGCAT | 2 cut(s) | 565, 2666 |
| MroXI | GAANNNNTTC | 2 cut(s) | 297, 2262 |
| MscI | TGGCCA | 1 cut(s) | 26 |
| MslI | CAYNNNNRTG | 4 cut(s) | 201, 438, 2421, 2757 |
| Msp20I | TGGCCA | 1 cut(s) | 26 |
| MspA1I | CMGCKG | 4 cut(s) | 713, 798, 2401, 2630 |
| MspI | CCGG | 1 cut(s) | 1000 |
| MspR9I | CCNGG | 7 cut(s) | 886, 1000, 1119, 1248, 2743, 2843, 3061 |
| MunI | CAATTG | 2 cut(s) | 843, 2808 |
| Mva1269I | GAATGC | 5 cut(s) | 1802, 1908, 2497, 2836, 2916 |
| MvaI | CCWGG | 6 cut(s) | 886, 1119, 1248, 2743, 2843, 3061 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1382, 1787, 2831 |
| NarI | GGCGCC | 1 cut(s) | 3161 |
| NciI | CCSGG | 1 cut(s) | 1000 |
| NcoI | CCATGG | 1 cut(s) | 471 |
| NdeI | CATATG | 2 cut(s) | 1390, 1656 |
| NdeII | GATC | 8 cut(s) | 1121, 1282, 1675, 2206, 2427, 2926, 3056, 3199 |
| NlaIV | GGNNCC | 9 cut(s) | 175, 940, 996, 1004, 1369, 1529, 1785, 1797, 3162 |
| NmuCI | GTSAC | 6 cut(s) | 37, 408, 626, 1250, 1719, 1966 |
| NsiI | ATGCAT | 2 cut(s) | 565, 2666 |
| NspI | RCATGY | 4 cut(s) | 543, 857, 2126, 2142 |
| PaeI | GCATGC | 1 cut(s) | 2126 |
| PaeR7I | CTCGAG | 1 cut(s) | 1999 |
| PceI | AGGCCT | 2 cut(s) | 2154, 3072 |
| PciI | ACATGT | 1 cut(s) | 853 |
| PctI | GAATGC | 5 cut(s) | 1802, 1908, 2497, 2836, 2916 |
| PdmI | GAANNNNTTC | 2 cut(s) | 297, 2262 |
| PfeI | GAWTC | 9 cut(s) | 193, 785, 1187, 1651, 1733, 1961, 2034, 2891, 3170 |
| PflFI | GACNNNGTC | 2 cut(s) | 319, 1397 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 281, 1124, 2404 |
| PleI | GAGTC | 7 cut(s) | 424, 833, 1684, 1848, 2713, 2846, 2870 |
| PluTI | GGCGCC | 1 cut(s) | 3164 |
| PpsI | GAGTC | 7 cut(s) | 424, 833, 1684, 1848, 2713, 2846, 2870 |
| PpuMI | RGGWCCY | 1 cut(s) | 1796 |
| PscI | ACATGT | 1 cut(s) | 853 |
| PshBI | ATTAAT | 1 cut(s) | 249 |
| Psp124BI | GAGCTC | 3 cut(s) | 699, 1222, 2109 |
| Psp1406I | AACGTT | 1 cut(s) | 2100 |
| Psp5II | RGGWCCY | 1 cut(s) | 1796 |
| Psp6I | CCWGG | 6 cut(s) | 884, 1117, 1246, 2741, 2841, 3059 |
| PspFI | CCCAGC | 1 cut(s) | 2626 |
| PspGI | CCWGG | 6 cut(s) | 884, 1117, 1246, 2741, 2841, 3059 |
| PspN4I | GGNNCC | 9 cut(s) | 175, 940, 996, 1004, 1369, 1529, 1785, 1797, 3162 |
| PspPI | GGNCC | 5 cut(s) | 870, 1457, 1796, 2682, 2899 |
| PspPPI | RGGWCCY | 1 cut(s) | 1796 |
| PstI | CTGCAG | 4 cut(s) | 803, 1414, 1868, 2114 |
| PstNI | CAGNNNCTG | 4 cut(s) | 668, 1124, 1382, 3060 |
| PsuI | RGATCY | 4 cut(s) | 1121, 2206, 2926, 3056 |
| PsyI | GACNNNGTC | 2 cut(s) | 319, 1397 |
| PvuII | CAGCTG | 4 cut(s) | 713, 798, 2401, 2630 |
| RsaI | GTAC | 9 cut(s) | 379, 996, 1024, 1584, 2568, 2772, 2959, 3065, 3186 |
| RsaNI | GTAC | 9 cut(s) | 378, 995, 1023, 1583, 2567, 2771, 2958, 3064, 3185 |
| RseI | CAYNNNNRTG | 4 cut(s) | 201, 438, 2421, 2757 |
| SacI | GAGCTC | 3 cut(s) | 699, 1222, 2109 |
| Sau3AI | GATC | 8 cut(s) | 1121, 1282, 1675, 2206, 2427, 2926, 3056, 3199 |
| Sau96I | GGNCC | 5 cut(s) | 870, 1457, 1796, 2682, 2899 |
| ScaI | AGTACT | 3 cut(s) | 1024, 2568, 2959 |
| SchI | GAGTC | 7 cut(s) | 424, 833, 1684, 1849, 2714, 2847, 2870 |
| ScrFI | CCNGG | 7 cut(s) | 886, 1000, 1119, 1248, 2743, 2843, 3061 |
| SduI | GDGCHC | 8 cut(s) | 178, 217, 289, 619, 699, 928, 1222, 2109 |
| SfaNI | GCATC | 5 cut(s) | 1090, 1496, 2308, 2752, 3196 |
| SfcI | CTRYAG | 7 cut(s) | 641, 799, 1299, 1410, 1864, 2110, 2232 |
| SfoI | GGCGCC | 1 cut(s) | 3162 |
| Sfr274I | CTCGAG | 1 cut(s) | 1999 |
| SinI | GGWCC | 3 cut(s) | 870, 1796, 2899 |
| SlaI | CTCGAG | 1 cut(s) | 1999 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 201, 438, 2421, 2757 |
| SmlI | CTYRAG | 4 cut(s) | 602, 700, 1221, 1999 |
| SmoI | CTYRAG | 4 cut(s) | 602, 700, 1221, 1999 |
| SphI | GCATGC | 1 cut(s) | 2126 |
| SseBI | AGGCCT | 2 cut(s) | 2154, 3072 |
| SsiI | CCGC | 5 cut(s) | 6, 116, 1016, 1385, 1781 |
| SspDI | GGCGCC | 1 cut(s) | 3160 |
| SspI | AATATT | 2 cut(s) | 1756, 2080 |
| SspMI | CTAG | 6 cut(s) | 210, 506, 1286, 2066, 2570, 2835 |
| SstI | GAGCTC | 3 cut(s) | 699, 1222, 2109 |
| StuI | AGGCCT | 2 cut(s) | 2154, 3072 |
| StyD4I | CCNGG | 7 cut(s) | 884, 998, 1117, 1246, 2741, 2841, 3059 |
| StyI | CCWWGG | 5 cut(s) | 123, 471, 1156, 1460, 1506 |
| TaaI | ACNGT | 8 cut(s) | 382, 621, 1571, 1579, 2770, 2962, 2977, 3129 |
| TaiI | ACGT | 3 cut(s) | 450, 985, 2103 |
| TaqI | TCGA | 5 cut(s) | 308, 1707, 2000, 2703, 2879 |
| TatI | WGTACW | 7 cut(s) | 377, 1022, 1582, 2566, 2770, 2957, 3184 |
| TauI | GCSGC | 4 cut(s) | 8, 1019, 1388, 1784 |
| TfiI | GAWTC | 9 cut(s) | 193, 785, 1187, 1651, 1733, 1961, 2034, 2891, 3170 |
| TscAI | CASTG | 7 cut(s) | 46, 589, 624, 880, 1777, 2029, 2547 |
| TseFI | GTSAC | 6 cut(s) | 37, 408, 626, 1250, 1719, 1966 |
| TseI | GCWGC | 9 cut(s) | 372, 521, 713, 798, 1013, 1409, 1883, 2846, 3209 |
| Tsp45I | GTSAC | 6 cut(s) | 37, 408, 626, 1250, 1719, 1966 |
| TspGWI | ACGGA | 4 cut(s) | 325, 1954, 2364, 3065 |
| TspRI | CASTG | 7 cut(s) | 46, 589, 624, 880, 1777, 2029, 2547 |
| Tth111I | GACNNNGTC | 2 cut(s) | 319, 1397 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 281, 1124, 2404 |
| VneI | GTGCAC | 2 cut(s) | 285, 615 |
| VpaK11BI | GGWCC | 3 cut(s) | 870, 1796, 2899 |
| VspI | ATTAAT | 1 cut(s) | 249 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 933, 2148 |
| XapI | RAATTY | 8 cut(s) | 399, 1308, 1418, 1481, 1987, 2016, 2195, 2999 |
| XbaI | TCTAGA | 2 cut(s) | 1285, 2065 |
| XceI | RCATGY | 4 cut(s) | 543, 857, 2126, 2142 |
| XhoI | CTCGAG | 1 cut(s) | 1999 |
| XmiI | GTMKAC | 3 cut(s) | 444, 850, 2453 |
| XmnI | GAANNNNTTC | 2 cut(s) | 297, 2262 |
| XspI | CTAG | 6 cut(s) | 210, 506, 1286, 2066, 2570, 2835 |
| ZrmI | AGTACT | 3 cut(s) | 1024, 2568, 2959 |
| Zsp2I | ATGCAT | 2 cut(s) | 565, 2666 |